BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323916

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53770.1 | Symbols:  | late embryogenesis abundant 3 (LEA3) ...   553    5e-157


> AT3G53770.1 | Symbols:  | late embryogenesis abundant 3 (LEA3) 
family protein | chr3:19923328-19923826 FORWARD LENGTH=375
Length=375

 Score =  553 bits (299),  Expect = 5e-157
 Identities = 339/359 (94%), Gaps = 0/359 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTCAATCACTTTCCAATCTCAAAAGTTTCTCTCGATCAATCAACAACACAATCATA  60
            |||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||| |
Sbjct  1    ATGTCTCAATCACTTTTCAATCTCAAAAGTTTATCTCGCTCGATCAACAACACAATCAGA  60

Query  61   ATGAGAAGATACATTGTGATCACAAAAGCCTCTCAAAGGGGATATACAACTGGAAGTAGT  120
            |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct  61   ATGAGAAGATACATTGTGATCACAAAAGCCTCTCAAAGGGCATATACAATTGGAAGTAGT  120

Query  121  CGAGAGAAGCCATCGTGGACATCAGACCCTGATACCGGATACTTTAGACCTAAGACCGCT  180
            | |||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||
Sbjct  121  CAAGAGAAGCCATCGTGGGCATCAGACCCTGATACCGGATACTTTAGACCCGAGACCGCT  180

Query  181  ACAAAAGAGTTAGATCCATACATCACAAAAACCTCTCAAATTCAAGGTAAAATGATGAGA  240
             ||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||
Sbjct  181  GCAAAAGAGTTAGATCCATACATTGCAAAAACCTCTCAAGTTCAAGGTAAAATGATGAGA  240

Query  241  GGAGAAGAGTTATGGTGGATGCCTGATCCTCACACCGGATACTATAGACCCGACAATTTT  300
            |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  241  GGAGAAGAGTTATGGTGGATGCCTGATCCTCAGACCGGATACTATAGACCAGACAATTTT  300

Query  301  GCCAGAGAGCTTGACGCAGTTGAGCTACGGTCTTTGCACCTCAATAAGAATCACAAGAC  359
            ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct  301  GCCAGAGAGCTTGACGCAGTTGAGCTACGGTCTTTGCACTTCAACAAGAATCAAAAGAC  359



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5