BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323917
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53780.2 | Symbols: ATRBL4, RBL4 | RHOMBOID-like protein 4 |... 1869 0.0
> AT3G53780.2 | Symbols: ATRBL4, RBL4 | RHOMBOID-like protein 4
| chr3:19924568-19927026 REVERSE LENGTH=1724
Length=1724
Score = 1869 bits (1012), Expect = 0.0
Identities = 1128/1185 (95%), Gaps = 3/1185 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGAGAAAGATTCAGAAACAGCTCCGATTTGGGGAAAAACTGGACAGAGAGAGAGC 60
|||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 379 ATGGGTGAGAAAGATTCAGAAACAGCTCCGATTTGGGGGAAAACTCGAGAGAGAGAGAGG 438
Query 61 AGCAACAACAACAACATACACCCAATGGATTTAGAGTCG---TCTTCTCTATCTGGGCAA 117
|||||||||||||| ||||| |||||||||||||||||| |||||| |||||||||||
Sbjct 439 AGCAACAACAACAATATACAGCCAATGGATTTAGAGTCGTCCTCTTCTGTATCTGGGCAA 498
Query 118 CAGCGATCTTTGAATCGGAGTCGAAGTTCTTATGAAGAACGAGGAAGAGGAGTTAAAGAG 177
|| ||||| |||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 499 CAACGATCGTTGACTCAGAGTCGAAGTTCTTATGAAGAACGAGGTAGAGGAGTTAAAGAG 558
Query 178 TTTCGGAGTTGGTTCCCTTGGCTCATTCCATGTTTCGTTGTTGCTAACGTTGTCGTGTTT 237
|||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 559 TTTCGGAGTTGGTTTCCTTGGCTCATTCCTTGTTTCGTTGTTGCTAACGTTGCCGTCTTC 618
Query 238 GTGATCACCATGTATGTCAACAATTGTCCGAAGAAATCTGGAGATTGTTTTGCTGATTTC 297
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 619 GTGATCACCATGTATGTCAACAATTGTCCTAAGAAATCTGGAGATTGTTTTGCTGATTTC 678
Query 298 TTGGGTCGATTCTCGTTTCAGAACACCAGAGAGAATCCTCTTCTGGGTCCTTCCTCTCTC 357
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 679 TTGGGTCGTTTCTCGTTTCAGAACACCAGAGAAAATCCTCTTCTGGGTCCTTCCTCTCTC 738
Query 358 ACGTTACAAACAATGGGTGGATTGGATGTaaaaaaaGTGGTTAAAGGAGATGAAGGATGG 417
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 739 ACGTTACAAACAATGGGTGGATTAGATGTTAAAAAAGTGGTTAAAGGAGATGAAGGATGG 798
Query 418 CGTCTACTTTCTTGCAACTGGTTACATGGAGGAGTTGTTCATTTATTGGTGAACATGTTG 477
||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||
Sbjct 799 CGTCTACTTTCTTGCAATTGGTTACATGGAGGAGTTGTTCATTTACTGATGAACATGTTG 858
Query 478 ACTCTTTTATTCATCGGTATACGTATGGAACGTGAATTTGGTTTTATTCGGATTGGATTG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 ACTCTTTTATTCATCGGTATACGTATGGAACGTGAATTTGGTTTTATTCGGATTGGATTG 918
Query 538 CTTTATTTGATATCAGGTTTTGGAGGAAGTATATTGTCAGCTCTTTTCCTCCGCTCAAAC 597
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 919 CTTTATTTGATATCAGGGTTTGGAGGAAGCATATTGTCAGCTCTTTTCCTCCGTTCAAAC 978
Query 598 ATCTCTGTTGGAGCATCTGGTGCGGTGTTTGGTTTACTTGGTGGAATGCTCTCTGAGATC 657
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 979 ATCTCTGTTGGAGCATCTGGTGCCGTGTTTGGTTTACTTGGAGGAATGCTCTCTGAGATC 1038
Query 658 TTTATCAACTGGACGATCTATTCTAACAAGGTTGTGACGATTATAACTCTTGTAATAATT 717
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1039 TTTATCAACTGGACAATCTATTCTAACAAGGTTGTGACGATTGTAACTCTTGTATTGATT 1098
Query 718 GTGGCGGTGAACTTGGGACTTGGTGTGCTCCCGGGAGTAGATAACTTTGCTCATATAGGA 777
||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||
Sbjct 1099 GTGGCGGTGAACTTGGGGCTCGGTGTGCTCCCTGGAGTAGATAACTTTGCTCATATCGGA 1158
Query 778 GGGTTTGCTACAGGTTTTCTTCTTGGATTTGTGCTCTTAATCCGTCCCCATTACGGATGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 GGGTTTGCTACAGGTTTTCTTCTTGGATTTGTGCTCTTAATCCGTCCCCATTACGGATGG 1218
Query 838 ATCAACCAAAGAAACGCTCCAGGAGCTAAGCCCCACAGGTTCAAGATGTATCAGGGCATA 897
|||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1219 ATCAACCAAAGAAACGGTCCTGGAGCTAAACCCCACAGGTTCAAGATATATCAGGGCATA 1278
Query 898 TTATGGACCATCTCTCTTCTCCTCTTGGTCGCCGGGTTCATTACTGGATTGATCTCTCTC 957
|||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 1279 TTATGGACTATCTCTCTTCTCATCTTGGTCGCTGGGTTCATTGTTGGATTGATCTCTCTC 1338
Query 958 TTCAACAACGTTGATGGAAACGAACATTGCTCATGGTGTCATTATCTTTCATGTATTCCA 1017
|||||||| || ||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 1339 TTCAACAATGTCGATGGAAACGAACATTGTTCGTGGTGTCATTATCTTTCATGTGTTCCA 1398
Query 1018 ACTTCTAAATGGAGCTGTAACCGAGAACCAGCCTCTTGCACGACGACTCAATTAGGTAAC 1077
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 ACATCTAAATGGAGCTGTAACCGAGAACCAGCCTCTTGCACGACGACTCAATTAGGTAAC 1458
Query 1078 CAATTGAGCATGACTTGTTTGAGGAATGGGAAATCAGCATCTTACATTTTGGCAAATCCC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 CAATTGAGCATGACTTGTTTGAGGAATGGGAAATCAGCATCTTACATTTTGGCAAATCCC 1518
Query 1138 TCGGATTCACGGATTAATAGCTTATGTGTTCAGCTTTGTCGTTGA 1182
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1519 TCGGATTCACGGATTAATAGCTTATGTGTTCAGCTTTGCCGTTGA 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5