BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg323927

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53890.1 | Symbols:  | Ribosomal protein S21e  | chr3:199553...   399    4e-111


> AT3G53890.1 | Symbols:  | Ribosomal protein S21e  | chr3:19955344-19956361 
REVERSE LENGTH=584
Length=584

 Score =  399 bits (216),  Expect = 4e-111
 Identities = 238/249 (96%), Gaps = 0/249 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGAACGAAGAAGGGAAGATCACAGAGCTCTACATTCCGAGAAAATGCTCGGCAACA  60
            ||||||||||| | |||  || ||||||||||||||||||| || |||||||||||||||
Sbjct  98   ATGGAGAACGACGCAGGTCAGGTCACAGAGCTCTACATTCCAAGGAAATGCTCGGCAACA  157

Query  61   AACAGATTGATCACATCAAAGGATCATGCTTCAGTTCAGCTTAACATTGGTCATCTTGAT  120
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  158  AACAGAATGATCACATCAAAGGATCATGCTTCAGTTCAGCTTAACATTGGTCATCTTGAT  217

Query  121  GCTAATGGTGTCTACACTGGCCAATTCACCACCTTTGCTCTCTGCGGATTTGTCCGTGCT  180
            ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  218  GCTAATGGTCTCTACACTGGCCAATTCACCACTTTTGCTCTCTGCGGATTTGTCCGTGCT  277

Query  181  CAGGGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTCGAAGCCAAA  240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  278  CAGGGAGACGCAGACAGTGGCGTGGACAGGCTCTGGCAGAAGAAGAAGGTCGAAGCTAAA  337

Query  241  CAACAGTGA  249
            |||||||||
Sbjct  338  CAACAGTGA  346



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11310243525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5