BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323928
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53900.2 | Symbols: UPP, PYRR | uracil phosphoribosyltransfe... 1426 0.0
> AT3G53900.2 | Symbols: UPP, PYRR | uracil phosphoribosyltransferase
| chr3:19956656-19959041 REVERSE LENGTH=1184
Length=1184
Score = 1426 bits (772), Expect = 0.0
Identities = 852/891 (96%), Gaps = 3/891 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTGCTCAATTGGTAACACTTTCAGGTGTTCTTCTGATACGCTGCGTTTTGGTCCC 60
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 36 ATGGCGTGCTCAATTGGTAACGCTTTCAGGTGTTCTTCTGATACGCTGCGTTTTGCTCCC 95
Query 61 CGACAACAAT---GCAGCCGCCTAAACCCTAATCCTTCCTCTTTCCTCTCCTTTAATTCC 117
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 CGACAACAATGCAGCAGCCGCCTAAACCCTAATCCTTCCTCTTTCCTCTCCTTTAATTCC 155
Query 118 TCCCCAATTCTCGCACAGAATTTGAGTGCTTCTTCTTCGTCTGTTTCCCGGCGGACTATT 177
|||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct 156 TCCCCAATTCTCGCACAGAATTTGGGTGCTTCTTCTTCGTCACTTTCCCGACGGACTATA 215
Query 178 CGAGTTAGAGCAAAAATGGCGGCGTCAGAGGGTTCGATTAACGGAAGCAATAGGATGCTG 237
|||| |||| |||||||||| ||||| |||| ||| |||||||| ||||| |||||||||
Sbjct 216 CGAGCTAGAACAAAAATGGCTGCGTCGGAGGCTTCCATTAACGGGAGCAACAGGATGCTG 275
Query 238 GTGTTTGTGCCACCACATCCTTTGATCAAACACTGGATCTCTGTTCTCAGAAATGACCAA 297
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 276 GTCTTTGTGCCACCACATCCTTTGATCAAACACTGGATCTCTGTTCTGAGAAATGAACAA 335
Query 298 ACTCCTTGTCCTATTTTCAGGAATGCAATAGCTGAACTAGGGAGACTACTCATGTATGAA 357
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 336 ACTCCTTGTCCTGTTTTCAGGAATGCAATAGCTGAACTAGGGAGATTACTCATGTATGAA 395
Query 358 GCAGCACGAGAGTGGCTGCCAACTGTTGTGGGAGAAATAATGTCTCCTATGGGTCCTGCT 417
||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 396 GCATCACGAGAGTGGCTGCCAACTGTTGTGGGTGAAATAATGTCTCCAATGGGTCCTGCT 455
Query 418 TCTGTTGAATTCATTGATCCTAGAGAGCCTATAGCGGTTGTTCCGATTTTAAGAGCTGGT 477
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 456 TCTGTTGAATTCATTGATCCTAGAGAGCCTATTGCGGTTGTTCCGATATTAAGAGCTGGT 515
Query 478 CTTGCTCTTGCGGAACACGCATCCTCAGTTTTGCCTGCAAATAAAATTTATCATTTAGGA 537
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 516 CTTGCTCTTGCGGAACACGCATCCTCAGTTTTACCTGCTAATAAAATTTATCATTTAGGA 575
Query 538 GTAAGTAGGGATGAGAAAACACTTTTGCCGTCGGTGTATCTTAACAAGTTGCCTGATGAA 597
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 576 GTAAGTAGAGATGAGAAAACACTTTTACCATCGGTGTATCTTAACAAGTTGCCTGATGAA 635
Query 598 TTTCCCAAGAATTCAAGAGTATTTTTGGTCGATCCAGTGCTTGCCACAGGTGGTACCATA 657
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 636 TTTCCCAAGAATTCAAGAGTATTTTTGGTCGACCCAGTGCTTGCCACAGGTGGTACCATA 695
Query 658 ATGGCGGCGATGGATCTATTGAAGGAACGTGGTTTGTCTGTGCAGCAAATCAAAGTGATT 717
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 696 ATGGCGGCGATGGATCTATTGAAGGAACGTGGTTTGTCTGTTCAGCAAATCAAAGTGATT 755
Query 718 TGTGCGATTGCTGCACCTCCTGCACTATCGAAGCTGAATGAGAAATTCCCCGGGCTTCAT 777
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 756 TGTGCGATTGCTGCACCTCCTGCACTATCGAAGCTTAACGAGAAATTCCCCGGGCTTCAT 815
Query 778 GTATATGCTGGAATTATCGATCCTGAAGTCAATGAAAAGGGGTACATAATCCCTGGGCTT 837
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GTATATGCTGGAATTATTGATCCTGAAGTCAATGAAAAGGGGTACATAATCCCTGGGCTT 875
Query 838 GGAGACGCTGGAGACCGCAGTTTCGGGACAGAAACACATTGGGTGAAGTGA 888
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 GGAGACGCTGGAGACCGCAGTTTCGGGACAGAAACACATTGGGTGAAGTGA 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5