BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323952
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54160.1 | Symbols: | RNI-like superfamily protein | chr3:2... 1840 0.0
AT5G15620.1 | Symbols: | F-box/RNI-like superfamily protein | ... 697 0.0
> AT3G54160.1 | Symbols: | RNI-like superfamily protein | chr3:20053468-20055027
FORWARD LENGTH=1305
Length=1305
Score = 1840 bits (996), Expect = 0.0
Identities = 1207/1308 (92%), Gaps = 18/1308 (1%)
Strand=Plus/Plus
Query 1 ATGAGTGAGATCGTGAGAGTTCAAGAGATCATTTCTAAACTCTGGAACCTAAAGATAGCC 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1 ATGAGTGAGATCGTGAGAGTTCAAGAGATCGTTTCTAAACTCTGGAACCTAAACATAGCC 60
Query 61 TCCAAGAACTGCCTGAATCTGGTTACGATCATATCGACTGTTGCTTATGATCCTTCGTTT 120
||||| || | || ||||||||||||||||||||||| ||||| |||| |||||||||||
Sbjct 61 TCCAAAAAATCCCCGAATCTGGTTACGATCATATCGAATGTTGGTTATAATCCTTCGTTT 120
Query 121 GAAACTAATGGAAGCTTCAAAGATTTCGTTTCAAGATTATTGGCTCGACGTGACAGTTAC 180
|||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 121 GAAACTAATGGAAGCTTCAAAGATTTCGTTTCTCGATTACTAGCTCGACGTGACAGTTAC 180
Query 181 CGTATAAGGAGATTCTCTTTGAAACTGCGGTCTATGGAATTTGACTCAGCTAAGTACAAT 240
|||||||||||||||||||||||||| || ||| |||||||||| |||||||||||| ||
Sbjct 181 CGTATAAGGAGATTCTCTTTGAAACTACGTTCTTTGGAATTTGATTCAGCTAAGTACCAT 240
Query 241 CTTGTCAACGATTGTCTACGCAATGTGTTG-ATACGAGGTGTTTTGGATCTTGAATTGGA 299
||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 241 CTTGTCAACGAATGTCTACGCAATGTGTTGAAT-CGAGGTGTTTTGGATCTTGAATTGGA 299
Query 300 CATAAATGTCGATGAAGATTATACACTGCCATGTGAGGTCTTCACTTGCAAGAAAGTTGT 359
||| |||||| |||||| ||| | | |||||| |||||||||||||||||||||||||||
Sbjct 300 CATCAATGTCAATGAAGTTTACAAATTGCCATTTGAGGTCTTCACTTGCAAGAAAGTTGT 359
Query 360 GAAATTGAAGCTAGGGTCTGCTTTTGTTATTGATAATATCCCTAAGAACGCTTTGCTTCC 419
||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 360 GAAATTGAAACTAGGTTCTGATTTTGTTATTGACAATATCCCTAAGAACGCTTTGCTTCC 419
Query 420 AGCTCTTAAGACTCTCTTTCTTGATAAAGTCCGGTTCAATGATAAAAGTGGTGGTTGTGC 479
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 420 AGCTCTTAAGACTCTCTTTCTTGATAAAGTTCGGTTCATTGATAAAAGTGGTGGTTGTGC 479
Query 480 GTTTGCAAGGCTTGTTTCTGCTTGCCCTGTGCTTGAGGAGTTATTCATATATAGGAACAA 539
|||| |||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||
Sbjct 480 GTTTACAAGGCTTGTTTCTGCTTGCCCTGTGCTAGAGGATTTAGTGATATATAGGAACAA 539
Query 540 CCGTGAAGACTGGGAATGGTCTCGCATTGTGTCTAGTCAGATCCTTAAGAGACTTACTAT 599
||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 540 CCGTGAAGATTGGGAATGGTCTCGCATTGTGTCTAGTAAGATCCTTAAGAAACTTACTAT 599
Query 600 TCGGCGTCAAGACTGGGGAGATCTTGATGGCTCTAGTTATGAGTCTATTAGTTTTGATAC 659
||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 TCGGCGTGAAGACTGGGAAGATCTTGATGGCTCTAGTTATGAGTCAATTAGTTTTGATAC 659
Query 660 TCCGAGTCTTGAATACTTTGAATACTTTGATGTTCTCCGAGATGAGTATCCAGTTGTTAA 719
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
Sbjct 660 TCCGAGTCTTGAATACTTCGAATACTTTGATGTTCTCCGAGATGGGTATCCAGTTGTTGA 719
Query 720 TCTCAAATCCCTTGTTGAAGCTAAGCTAGAACTTCCTCTTTTCATGGTTGGCGATACCTA 779
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 TCTCAAGTCCCTTGTTGAAGCTAAGCTAGAACTTCCTCTTTTTATGGTTGGCGATACCTA 779
Query 780 CGATGTTAGGAATCTGATTAAGGGCTTAAAAAATGTTCAGATTCTGAGCTTTGGTGCTCT 839
|||||||| ||||||||||||||||||| |||||||||||||||||||||| || | | |
Sbjct 780 CGATGTTAAGAATCTGATTAAGGGCTTAGAAAATGTTCAGATTCTGAGCTTAGGCGTTGT 839
Query 840 TGACACCATGCAGCTGTTTTACATCTTCAGA-GAAGCAGTACCAGTGTTTGAAAACCTGT 898
|||||| |||||| |||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 840 TGACACGATGCAGGTGTTTTGTTTCTTC-GAAGAAGCAGTACCAGTGTTTGAAAACCTGT 898
Query 899 TTCATTTATCACTTACCACTGAAGCAGCTTTCTGTTGGGCTGTTCTGCCAATTCTGCTTG 958
||||||||||||||| |||||||| || |||||||||| |||||| |||||||||||||
Sbjct 899 TTCATTTATCACTTAGCACTGAAGTAGATTTCTGTTGGAATGTTCTACCAATTCTGCTTG 958
Query 959 AGAAATCTCCAAATCTAGAGACTCTCACCATTGGGGCTTTGCATTATTCTACT---CA-- 1013
||||||||||||||||| |||||||||||||| ||||||||||||| ||||| ||
Sbjct 959 AGAAATCTCCAAATCTAAAGACTCTCACCATTCAGGCTTTGCATTATACTACTAATCACT 1018
Query 1014 A-G---A--AGA-CACTGTTTGCGAATGCTTGAAGGGGTATTCTTTCCTATCGTCCTGTC 1066
| | | ||| |||||||||||| || ||| ||| |||||||||| |||||||||| |
Sbjct 1019 ATGGGGATGAGAACACTGTTTGCGATTGTTTGGAGGTGTATTCTTTCTTATCGTCCTGCC 1078
Query 1067 ATATTGAGGTTCTAAGGATAACCCAGTTCGAGGGAGATATTGGAGAGATGGTGCAAATAA 1126
||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1079 ATATTGAGGTTCTAAAGATAACCCAGTTCAAGGGAGATATCGGAGAGATGGTGCAAATAA 1138
Query 1127 AGCATATCTTGGAGAAATTGCCGAGTCTTGAGCTGTTGGAAATTCATTGTCAGGCAAGAA 1186
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 1139 AGCATATCTTGGAGAAATTGCCGAGTCTTGAGCTGTTGGAAATTCATGGTCAGGTAA-AA 1197
Query 1187 G-AGATGACGAAAAGCTGCAGATCATGTTGGATCTCCTAATGCTCGAAAGAGCTTCGTCT 1245
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1198 GGAGATGACAAAAAGCTGCAGATCATGTTGGATCTCCTAATGTTCGAAAGAGCTTCGTCT 1257
Query 1246 GAATGCAAAGTCCAGGTCAAGTTTCCAGTTTGTTTTGCCTCAGCATGA 1293
|||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1258 GAATGCAAAGTCGAGGTCAAGTTTCCAGTTTGTTTTGCCTCAGCATGA 1305
> AT5G15620.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:5082465-5083991 FORWARD LENGTH=1323
Length=1323
Score = 697 bits (377), Expect = 0.0
Identities = 926/1177 (79%), Gaps = 93/1177 (8%)
Strand=Plus/Plus
Query 155 GATTATTGGCTCG-ACGTGACAGTTACCGTATAAGGAGATTCTCTTTGAAACTGCG-GTC 212
||||||| ||| | || || |||||||||||||| |||||||||| ||||| || | |||
Sbjct 173 GATTATTAGCT-GAACCTGCCAGTTACCGTATAAAGAGATTCTCTCTGAAATTG-GTGTC 230
Query 213 TATGGAATTTGACTCAGCTAAGTACAATCTTGTCAACGATTGTCTACGCAATGTGTTGAT 272
|||||| |||| ||||| | | | ||| |||||||||||||||| ||||||||||||
Sbjct 231 TATGGATTTTG-CTCAG-T-A-T--AATATTGTCAACGATTGTCTTTGCAATGTGTTGA- 283
Query 273 A-CGAGGTGTTTTGGATCTTGAATTGGACATAAATGTCGATGAAGATTATACACTGCCAT 331
| |||||||| ||||||||||| | ||||| || ||| | |||||||| | ||| || |
Sbjct 284 AGCGAGGTGTCTTGGATCTTGAGCTCGACATTAACGTCAAAGAAGATTACATACTTCCTT 343
Query 332 GTGAGGTCTTCACTTGCAAGAAAGTTGTGAAATTGAAGCTAGGGTCTGCTTTTGTTATTG 391
||| |||||||||||||||| |||||| | | |||| ||||||| || |||||||||||
Sbjct 344 CTGATGTCTTCACTTGCAAGACAGTTGTTAGACTGAAACTAGGGTGTGGTTTTGTTATTG 403
Query 392 ATAATATCCCTAAGAACGCTTTGCTTCCAGCTCTTAAGACTCTCTTTCTTGATAAAGTCC 451
| | | |||||||||| ||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 404 ACATTCTCCCTAAGAATGCTTTGCTTCCAGCTCTTAAGACTCTCATTCTTGATTCAGTTC 463
Query 452 GGTTCAATGATAAAAGTGGTGGTTGTGCGTTTGCAAGGCTTGTTTCTGCTTGCCCTGTGC 511
||||| | | |||| |||||||||||| |||||||| | ||||||| ||||||||
Sbjct 464 GGTTC--T-ACGCCAGTGATGGTTGTGCGTTCACAAGGCTTCTCTCTGCTTCCCCTGTGC 520
Query 512 TTGAGGAGTTA-TTCATATATAGGAACAACCGTGAAGACTGGGAATGG-TCTCGCATTGT 569
|||| |||||| || ||| || | |||| | ||| | | |||| || |||||| ||||
Sbjct 521 TTGAAGAGTTAGTT-ATAGATCGTCTCAACTGGGAACA-TTGGAAAGGTTCTCGCTTTGT 578
Query 570 GTCTAGTCAGATC-CTTAAGAGACTTACTATTCGGCGTCAAGACTGGGGA---GATCTTG 625
|||||||| || | ||||||||||||||| |||||||| |||| |||| | || | ||
Sbjct 579 GTCTAGTCCGA-CTCTTAAGAGACTTACTCTTCGGCGTAAAGAATGGGAACCCGAACCTG 637
Query 626 --A--TGGCTCTAG-TTATGAG-TCTATTAGTTTTGATACTCCGAGTCTTGAATACTTTG 679
| ||| || | || |||| | |||||||||||||||||||||||| |||||
Sbjct 638 AAACTTGG-ACT-GATTTTGAGAGC-GTTAGTTTTGATACTCCGAGTCTTGCTTACTTAA 694
Query 680 AATACTTTGATGTT-CTCCGAGATGAGTATCCAGTTGTTAATCTCAAATCCCTTGTTGAA 738
||||| |||||| ||| | ||| ||||||| ||||||||||||| ||| ||||||||
Sbjct 695 AATACAAAGATGTTATTCC-ATATGGGTATCCAATTGTTAATCTCAACTCCATTGTTGAA 753
Query 739 GCTAAGCTAGA-ACTTCCTCTTTTCA-T-G-GT-TGGCGA-T-ACCT-AC-GA-----TG 784
|||| ||| | |||||| | | | || | | | | | | || || ||
Sbjct 754 GCTAGGCT-CACTCTTCCT-AGGGAAGTAGAGTACGACTATTGGCTTAACAGATCTGCTG 811
Query 785 -T--TAGGAATCTGATTA-AGGGCTTAAAAAATGTTCAGATTCTGAGC-T-TTGGTGCTC 838
| | |||| |||||| ||||| ||||||||||| ||||||||||| | ||| ||
Sbjct 812 ATCCTTCGAATTTGATTAGAGGGC-TAAAAAATGTTGAGATTCTGAGCATCAAGGT--TC 868
Query 839 TTGACACCATGCAGCTG---TTTTACATCTTC-AGAGAAGCAGTACCAGTGTTTGAAAAC 894
|| | || ||| | ||| ||||| | |||| || |||||||| |||||||||||||||
Sbjct 869 TTCATACGATGGACCTGTTATTTTATAACTTCAAG-GAAGCAGTCCCAGTGTTTGAAAAC 927
Query 895 CTGTTTCATTTATCACTTACCACTGAAGCAGCTTTCTGTTGGGCTGTTCTGCCAATTCTG 954
|| ||||||| || |||||| |||||||| ||||||||||| | ||||| |||||||
Sbjct 928 TTGATTCATTTGTCGGTTACCAGTGAAGCAGATTTCTGTTGGGATCCTCTGCAAATTCTG 987
Query 955 CTTGAGAAATCTCCAAATCTAGAGACTCTCACCATTG-GGG-CT-TTGCA-T-TA-TTCT 1008
||||||||||||||||||||| ||||||||||||||| ||| | ||||| | || || |
Sbjct 988 CTTGAGAAATCTCCAAATCTAAAGACTCTCACCATTGAGGGTCCCTTGCACTATAATTTT 1047
Query 1009 -ACTCAAGAA--G-AC----A--CTGTTTGCGAATGCTTGAAGGGGTATTCTTTCCTATC 1058
| | || || | | | ||||||||||||| ||| ||||||||||||||| |
Sbjct 1048 TA-TGAAAAACTGGATTTGGAAGCTGTTTGCGAATGTTTGTTGGGGTATTCTTTCCTGTT 1106
Query 1059 GTCCTGTCATATTGAGGTTCT-AAGGATAACCCAGTTCG-AGGGAGATATTGGAGAGATG 1116
|||||| | |||| |||| || ||| |||||| |||||| ||| |||||| ||||||||
Sbjct 1107 GTCCTGCCCTATTAAGGTCCTCAAG-ATAACCGAGTTCGTAGG-AGATATCGGAGAGATA 1164
Query 1117 GTGCAAAT-AAAGCATATCTTGGAGAAATTGCCGAGTCTTGAGCTGTTGGAAATTCATTG 1175
|||||||| ||| ||| |||||| |||||||||| ||||||||||||||||| ||||| |
Sbjct 1165 GTGCAAATGAAA-CATGTCTTGGGGAAATTGCCGTGTCTTGAGCTGTTGGAAGTTCAT-G 1222
Query 1176 T-CAGGCAAGAAGAGATGACGAAAAGCTGCAGATCATGTTGGATCTCCTAATGCT-CGAA 1233
| |||||||||||||||||| ||||||||||||||||| ||||||| ||||||| | |
Sbjct 1223 TTCAGGCAAGAAGAGATGACAAAAAGCTGCAGATCATGGCGGATCTCTTAATGCTTCCCA 1282
Query 1234 AGAGCTTCGTCTGAATGCAAAGTCCAGGTCAAGTTTC 1270
|| |||| || ||||||| ||| ||||| | ||||
Sbjct 1283 -GAACTTCATCCAAATGCAAGGTCAAGGTCCA-TTTC 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5