BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323986
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54520.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1277 0.0
> AT3G54520.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G54530.1);
Has 72 Blast hits to 70 proteins in 20 species: Archae - 0;
Bacteria - 5; Metazoa - 8; Fungi - 2; Plants - 18; Viruses
- 0; Other Eukaryotes - 39 (source: NCBI BLink). | chr3:20183560-20185200
REVERSE LENGTH=1113
Length=1113
Score = 1277 bits (691), Expect = 0.0
Identities = 822/884 (93%), Gaps = 14/884 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGCTTCTACTCAGCTCAACGATGTCAACAAAATATCCAACTCTATTGGTATTGTA 60
||||||||||| ||||||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct 28 ATGGAAGCTTCCACTCAGCTCAACGGTGTCAACGAAATATCCAAGTCTATTGGTATTGTA 87
Query 61 GGCAACTATAATGAAAAGGGTTTAGGGAAACTTTACCGCGACAAGATGTCACCTGACGCT 120
||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |||
Sbjct 88 GGCAACTATGATGAAATGGGTTTAGGGAAACTTTACCGCGACAAGTTGTCACCTGATGCT 147
Query 121 GATCCAGTTGTGCACATGTCAGTTTCCAAAGCAGAGAAGCGACTCAAAAAGCTCGAGAGG 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 148 GATCCAGTTGTGCACATGTCAGTTTCCAAAGCAGAGAAGCGACTGAAAAAGCTCGAGAGG 207
Query 181 GATTATCAACACACCTACGAGAACTAC-ATAGAAACCCGATCAAACAGGTATAGGTTCTA 239
||||||||||| ||||||||||| ||| || |||| ||||||||||||||||||||||||
Sbjct 208 GATTATCAACATACCTACGAGAATTACAAT-GAAATCCGATCAAACAGGTATAGGTTCTA 266
Query 240 CATTGAAGCAAAACATTCTACGTATCGCAGTCAACAGGTTGGAAACTGTATCAAATATTA 299
|||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 267 CATTGAAGCAAAGCATTCTACGTATCGCAGTCGACAGGCTGGAAACTGTATCAAATATTA 326
Query 300 CAAGAATCTGCGAGAGCAACTGCAGAATAATCTTGACAAATTGAATAAAGTAGAAGCAAC 359
||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 327 CAACAATCTGCGAGAGCAACTGCAGAATAATCTTGACAAATTGAAAAAAGCAGAAGAAAC 386
Query 360 ACAGAGAGGAAG-AGAAAGGCCTGATCACTGGAAGCAAGTCTCGATG-ATCCGCGGTTGT 417
||||||||| || ||||| |||||||||||| |||| ||| |||||| | | |||||||
Sbjct 387 ACAGAGAGG-AGTAGAAAAGCCTGATCACTGCAAGCGAGTGTCGATGCA-GCACGGTTGT 444
Query 418 AAAAGCTTGGCCCAAGAAAAGAGGATACTACAACAGATAGGAGAAAG---ACAACAACAC 474
||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||
Sbjct 445 AAAAGCTTGACCCAAGAAAAGAGGATACTTCAACTGATAGGAGAAAGACAACAACAACAC 504
Query 475 CTGGAAAACAATGACCTTGGTCAAGAAACAATTCATTTCACAAAAATAAGCTGGGAGTTC 534
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 505 CTGGAAAACAATGACCTTGGTCAAGAAACAATTCATTTCACGAAAATAAGCTGGGAGTTC 564
Query 535 GACTACAGTCAAAGTAAAATTCCAAAAAGTAGCAACAGCAAAGCAGTACATAATCTGCTG 594
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 565 GACTACAGTCAAAGTAAAATTCCAAAAAGTAGCAACAGCAAAACAGTACATAATCTGCTG 624
Query 595 AGGAAATTTAAAGACACAGAGAAGTTGAAGGATAAAGCTATTGCCAATGGTGATCTTGTT 654
|||| |||||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 625 AGGAGATTTAAAGACACGGAGAAGTTGAAGGATAAAGCCGTTGCCAATGGTGAACTTGTT 684
Query 655 AACAACCCAACAAGTCAGGACATTTTGACAATTTCTATAGAGATGGAACTAAAACTCCTG 714
||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 685 AACAACCCAACTAGTCAGGACAACTTGACAATTTCTATAGAGATGGAAATAAAACTTCTG 744
Query 715 ACAAAGGTAATCAAAACGCTTGAAAAAGAAAGAGGAATAGAGACAACAAGGACTGATAAC 774
|||||||||||||||| |||||||| ||||||||| |||||||||| |||||||| |
Sbjct 745 ACAAAGGTAATCAAAAAGCTTGAAAGAGAAAGAGGGATAGAGACAA---GGACTGATTAT 801
Query 775 GGTCACGAGGAAAAGATGAGGCATCTAGAGAAAAAATGTGAA-TGGATATGCGGGAAATG 833
||||||||||||||||| | |||||||||||||||||||||| || |||||||| |||||
Sbjct 802 GGTCACGAGGAAAAGATCAAGCATCTAGAGAAAAAATGTGAAATG-ATATGCGGAAAATG 860
Query 834 GGATGAAGAAAAGAAGTATATTGTAGGGTTGAAGAACATACATG 877
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 GGATGAAGAAAAGAAGTATATTGTAGGGTTGAAGAACATACATG 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5