BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324005
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54740.2 | Symbols: | Protein of unknown function, DUF593 |... 2078 0.0
> AT3G54740.2 | Symbols: | Protein of unknown function, DUF593
| chr3:20262391-20264601 FORWARD LENGTH=1894
Length=1894
Score = 2078 bits (1125), Expect = 0.0
Identities = 1255/1318 (95%), Gaps = 8/1318 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCAGAATTGAGATTTCCTTCAAGGGATGTTGTGAATTGCTGTGAATTTGGTTGT 60
||||||||||||||||| ||| |||| |||||||| |||||||||||||||| |||||||
Sbjct 443 ATGGATTCAGAATTGAGTTTTTCTTCGAGGGATGTGGTGAATTGCTGTGAATATGGTTGT 502
Query 61 GATTATTCACTTGGGGCATGTTCTTCAGATCCTTGGGCTAGGACGGTGAAAAGAAAGTTC 120
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 503 GATTATTCTCTTGGGGCATGTTCTTCAGATCCTTTGGCTAGGACGGTGAAAAGAAAGTTC 562
Query 121 AACGAATTCAAAGAAGGG---AACATGATGTTGTTACGAGGTTCTTCTGATTCA---TCT 174
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 563 AACGAATTCAAAGAAGGGAACAACATGATGTTGTTACGAGGTTCTTCTGATTCATCTTCT 622
Query 175 TCAAACGCTAAGATACTAGTTGAGAATGAATGCGCAGCTTTACTTGAGGCTCTTTCTAGC 234
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 623 TCAAACGCTAAGATACTAGTTGAGAATGAATGTGCAGCTTTACTTGAGGCTCTTTCTAGC 682
Query 235 CAAAGGAAAACAGTTAAAGATCTTCATTTAGAGCTTGAAGAGGAGAGAAATGCTGCTGCA 294
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 683 CAAAGGGAAACAGTTAAAGATCTTCATTTAGAGCTTGAAGAGGAGAGAAACGCTGCTGCA 742
Query 295 TCTGCAGCGAATGAGACTATGTCGATGATACTGAGGTTGCAGAGAGAAAAGGCTGAGATT 354
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 TCTGCAGCTAATGAGACTATGTCGATGATACTGAGGTTGCAGAGAGAAAAGGCTGAGATT 802
Query 355 CAGATGGAAGCTCGGCAATTCAAAGTGTTTGCTGAGGAGAAAATGACGCATGACCAAGAA 414
|||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||||||
Sbjct 803 CAGATGGAAGCTCGGCAATTCAAAATGTTTGCTCAAGAGAAAATGACACATGACCAAGAA 862
Query 415 AAGCTCTCGGTTTTGGAGAATTTGTTGTATGAGAAAGAACAAGCTATTGAGGCCTTGACT 474
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 863 AAGCTCTCGGTTTTGGAGAATTTGTTGTATGAGAAAGAACAAGCTATCGAGGCATTGACT 922
Query 475 TATGAGGTCGAAGCATACAAGCATAGATTGTTGAGCTATGGAGTCTCTGAAGCTGAGATA 534
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 923 TATGAGGTCGAAGCATACAAGCATAGATTGTTGAGCTATGGGGTATCTGAAGCTGAGATA 982
Query 535 CATGATCAGATACTTGGTTTTGGCAGAGACTCGAGCACGGTTGGTTTTGATGTTTACCCG 594
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 983 CATGATCAGATACTTGGTTTTGGCAGAGACTCTAGCACGGTTGGCTTTGATGTTTACCCT 1042
Query 595 TGCGAGTATACTTCTTTGCAATGTAGTGTGGATGAGAACCCGTGTGAACCAGATGGTAA- 653
|||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1043 TGCGAGTATACTTCTTTGGAATGTAGTGTGGATGAGAACCCGAGTGGACCAGATGGTAAC 1102
Query 654 TGTTGATATTGAAGAAAAGGTGATAGTTGGTCAGTCTCCAAGATGGCCATATTATGATCC 713
| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1103 T-TTGAGATTGAAGAAAAGGTGATGGTTGGTCAGTCTCCAAGATGGCCATATTATGATCC 1161
Query 714 CAATTCGCCTTTAGGAACTGCAAAAGATATAAAGGGGACATCTTTCGCAGACTCTCCTAT 773
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1162 CAATTCGCCTTTAGGAACTGCAAAAGATATTAAGGGGGCATCTTTCGCAGACTCTCCTAT 1221
Query 774 GTCTAGTAGTAGCGACAGAGTTTATACTATCGACTCAATCCATGTGGGAGTTTCTGAAGT 833
|||||||||||||||| ||||||||||||||||||| || || |||||||||||||||||
Sbjct 1222 GTCTAGTAGTAGCGACCGAGTTTATACTATCGACTCCATTCACGTGGGAGTTTCTGAAGT 1281
Query 834 TAAGATTGACGACGAGCCTAATAAGATGAGTAAGGGAAAGTTAAATGGTGATCTCTGGAA 893
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1282 TAAGATTGACGATGAGCCTAATAAGATGAGTAAGGGAAAGTTAAATGGTGATCACTGGAA 1341
Query 894 CTCTCCGAGATACCAAGAACCATTCACGACTCAGCAAGGAGTTAACGAGCCAGATATAGA 953
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1342 CTCTCCAAGATACCAAGAACCGTTCACGACTCAGCAGGGAGTTAACGAGCCAGATATAGA 1401
Query 954 GAAGCTTTACACAAGGCTTCAAGCACTTGAAGCAGACAGGGAATCATTGAGACAGATCAT 1013
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1402 GAAGCTTTACACAAGGCTTCAAGCACTTGAGGCAGACAGGGAATCACTGAGACAGATCAT 1461
Query 1014 TGTGTCGATGCGGACAGATAAAGCTCAGTTGGTGTTACTGAAAGAAATCGCACAGCATTT 1073
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1462 TGTGTCGATGCGGACAGACAAAGCTCAGTTGGTGTTGCTGAAAGAAATCGCACAGCATTT 1521
Query 1074 AACAAAGGAAACCGGCACAACAAGCAGGCGACACCCGGTTAGCAAAATGTCATCTTTTAA 1133
|||||||||||||||| |||||||||||||| |||| |||||||||||| ||||| ||||
Sbjct 1522 AACAAAGGAAACCGGCGCAACAAGCAGGCGAAACCCTGTTAGCAAAATGCCATCTCTTAA 1581
Query 1134 AGGATTCTCTGTAGTAACGTTCTTCAAGTGGATTGTGTCTTTCGTTTCGTGGAAGAGGAA 1193
|| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1582 AGTATTCTCTGTAGTAACGGTCTTCAAGTGGATTGTGTCTTTCGTTTCGTGGAAAAGGAA 1641
Query 1194 AGCCAGGCAAAGCAAGTATGTTTATGAATTGTCAGCAAATAATATGGGGATGCTTATGAT 1253
|||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1642 AGCCAGACAAAACAAGTATGTTTATGAGTTGTCAGCAAATAATATGGGGATGCTTATGAT 1701
Query 1254 TCTAGGCGAGGGATCTGGAGCTAGGAGATGGAGATGTTTAACAAGTTCACATGTCTAG 1311
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1702 TCTAGGCGAGGGATCTGGAACTAGGAGATGGAGATGTTTAACGAGTTCACATGTCTAG 1759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5