BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324008
Length=2019
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54780.1 | Symbols: | Zinc finger (C3HC4-type RING finger) ... 3127 0.0
AT2G38970.1 | Symbols: | Zinc finger (C3HC4-type RING finger) ... 632 4e-180
> AT3G54780.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr3:20278954-20281551 FORWARD LENGTH=2181
Length=2181
Score = 3127 bits (1693), Expect = 0.0
Identities = 1928/2038 (95%), Gaps = 29/2038 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAGCAAATGGAAGAAGATGAAGCTAGCTTTGAGTTTGAATCTCTGC-ACTTATCT 59
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 32 ATGGTGAGCAAATGGAAGAAGATGAAGCTAGCTTTGAGTTTGAATCTCTGCAAC-TATCT 90
Query 60 -CCCACGAACCCTCGAAGAGGAACCACCATCATCAGCTTTAAATTCCGCTGAGAGATTAT 118
|||| |||||||||| |||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 91 CCCCA-GAACCCTCGAGGAGGAACCACCATCATTGGCTTTGAATTCCGCTGAGACATTAT 149
Query 119 CGGATGCTTCTTTGCTTTCTCCTCTTAACTGGCCCATGACTCCAACA-C--CTTCTTACC 175
| |||||| ||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 150 CAGATGCTGCTTTGCTCTCTCCTCTTAACTGGCCCATGACTCCAACACCTTCTTCTTACC 209
Query 176 GTAC-AAGGTTGTCCAGAAGTATCAGCAAATCGTCAAAGCAGACTTGCTCTATATGCTTG 234
|| | ||||||||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 210 GT-CGAAGGTTGTCCAGAAGTAGCAGCAAATCGTC-AA--AGACTTGCTCTATATGCTTG 265
Query 235 -ACTAAGATGAAAGAAGGTTGTGGACATGCAATTTTCACAGCTGAGTGCTCGCACATGTT 293
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 266 AAC-AAGATGAAAGAAGGTTGTGGACATGCAATTTTCACAGCGGAGTGCTCGCACATGTT 324
Query 294 TCATTTTCATTGCATTGCTTCGAATGTGAAACACGGCAACCAAGTTTGCCCAGTGTGCCG 353
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 325 TCATTTTCATTGCATTGCTTCGAATGTGAAACATGGCAACCAAGTTTGCCCAGTGTGCCG 384
Query 354 AGCTCAATGGAAGGAAATCCCTATACAGAAGCCGAGTTTGGATCTTCCTTATTATCCCTT 413
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 385 AGCTAAATGGAAGGAAATCCCTATACAGAAGCCGAGTTTGGATCTTCCTTATTACCCCTT 444
Query 414 TGACCGGTTCAATAATGATGCAGCCATTAGGCTTATCCGCTGCTTACCTCCTTCTCAACG 473
|||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 445 TGACAGGTGCAATAATGATGCAGCCATTAGCCTTTTCCGCTGCTTACCTCCTTCTCAACG 504
Query 474 AGCTATGAA-CCAAGGGCATCCTGAGCCAGCTATTTTCGATGATGATGAACGGTTAGAGG 532
|||||| || |||||||||||| |||||||||| |||||||||||||||||||||||| |
Sbjct 505 AGCTAT-AACCCAAGGGCATCCCGAGCCAGCTACTTTCGATGATGATGAACGGTTAGAAG 563
Query 533 CGCAAATTGTTTTTCTTGGTGAAACTGATGCT-TTGGAGAAGGAGAACTGTGATTCTGTG 591
||| ||||||||| |||||||||||| | | ||| ||||||||||| |||||| ||||
Sbjct 564 AGCAGATTGTTTTTGATGGTGAAACTGAAG-TCTTGAAGAAGGAGAACCGTGATTATGTG 622
Query 592 CGAATGATGGACATGAAAATGTATCCAGAGGTCTCAGCTGTACCACAATCCAAGTCCTGT 651
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 623 CGAATGATGGACATGAAAGTGTATCCAGAGGTCTCAGCTGTACCACAATCCAAGTCTTGT 682
Query 652 GAGAATTTTGATATATTAGTGCATCTCAAAGCAGTTACTGGTGATCAGATTTCTCAGTAT 711
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 GAGAATTTTGATGTACTAGTGCATCTCAAAGCAGTTACTGGTGATCAGATTTCTCAGTAT 742
Query 712 CGCCGAGCGCCAATTGATTTAGTTACAGTGCTAGACATCAGTGGTAGTATGGCAGGAACT 771
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 743 CGCCGAGCGCCAATTGATTTAGTTACAGTGCTAGACATCAGTGGTAGTATGGGAGGAACT 802
Query 772 AAGCTAGCACTTCTGAAACGAGCAATGGGTTTTGTGATTCAAAATCTTGGGTCCAGTGAT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 AAGCTAGCACTTCTGAAACGAGCAATGGGTTTTGTGATTCAAAATCTTGGGTCCAGTGAT 862
Query 832 AGGCTCTCAGTGATTGCTTTCTCTTCAACAGCTCGCCGTCTCTTCCCTTTAACACGAATG 891
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 863 AGGCTCTCAGTGATTGCTTTCTCTTCAACAGCTCGACGTCTCTTCCCTTTAACCCGAATG 922
Query 892 TCTGACGCAGGAAGACAGCAAGCCCTTCAAGCTGTTAACTCATTGGTGGCAAATGGTGGG 951
||||| || |||||||||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct 923 TCTGATGCTGGAAGACAGCTAGCCCTTCAAGCTGTTAACTCACTGGTTGCAAATGGTGGG 982
Query 952 ACCAATATCT-TCGATGGTCTTAGAAAAGGTGCTAAGGTTATGGAAGATAGACGAGAGAG 1010
|||||||| | |||||||||||||||||||||| ||||||||||||||||| | ||| ||
Sbjct 983 ACCAATAT-TGTCGATGGTCTTAGAAAAGGTGCCAAGGTTATGGAAGATAGGCTAGAAAG 1041
Query 1011 AAATTCTGTTGCCAGCATTATCCTTTTGTCTGACGGGCGAGATACCTATACTATGAACCA 1070
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1042 AAATTCTGTTGCCAGCATTATCCTTTTGTCTGACGGGCGAGATACATATACTACGAACCA 1101
Query 1071 TCCTGATCCAAGTTACAAGGTGATGCTTCCTCAGATCCCTGTTCACTCTTTTGGTTTTGG 1130
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1102 TCCTGATCCAAGTTACAAGGTGATGCTTCCTCAGATTTCTGTTCACTCTTTTGGTTTTGG 1161
Query 1131 ATCAGATCATGATGCTTCAGTGATGCACTCTGTTTCTGAATTCTCTGGTGGAACCTTCTC 1190
|||||||||||||||||||||||||||||| || |||||| |||||||||||||||| ||
Sbjct 1162 ATCAGATCATGATGCTTCAGTGATGCACTCAGTCTCTGAAGTCTCTGGTGGAACCTTTTC 1221
Query 1191 TTTCATTGAAAGTGAGTCTGTGATCCAGGATGCTCTTGCACAGTGCATTGGTGGACTTTT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 TTTCATTGAAAGTGAGTCTGTGATCCAGGATGCTCTTGCACAGTGCATTGGTGGACTTTT 1281
Query 1251 AAGCGTTGCAGTGCAGGAGTTACGAGTAGAAATTGAAGGTGTGTGCCCAAGTGTTCGACT 1310
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 1282 AAGCGTTGCAGTGCAGGAGCTACGAGTAGAAATTGAAGGTGTGAGCCCAAATGTTCGACT 1341
Query 1311 TAGCTCGATAAAAGCTGGGAGTTACTCTAGCCTTGTAAATGGTGATGGCCACTCAGGATT 1370
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1342 TAGCTCGATAAAAGCTGGGAGTTACTCTAGCCTTGTAACTGGTGATGGCCACTCAGGGTT 1401
Query 1371 GGTTGATCTTGGTGATCTTTATGCCGATGAAGAGAGGGATTTTTTGGTTTCTATCAACAT 1430
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1402 GGTTGATCTTGGTGATCTTTATGCTGATGAAGAGAGGGATTTCTTGGTTTCTATCAACAT 1461
Query 1431 CCCTGTTGAGGAAGATGGACATACACCATTGCTAAAGCTGAGATGTCTCTACATTGATCC 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1462 CCCTGTTGAGGAAGATGGACATACACCATTGCTAAAGCTGAGATGTCTCTACATTAATCC 1521
Query 1491 CTTGACAAAGGAGATTACGACGGTTGAAAGTCCCGTGCTTCAGATTCGTAGACCAGAATA 1550
|||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||
Sbjct 1522 CTTGACAAAGGAGATTACAACGCTTGAAAGTCACGTGCTTCAGATTCGAAGACCAGAATA 1581
Query 1551 TGTTGCTGAAGAAGAAGTTGTCCCCATCGAAGTGGTCAGGCAAAGAAATAGATTCTTAGC 1610
||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 1582 TGTTGCTGAAGAAAAAGTTGTTCCCATCGAAGTGGTCAGGCAAAGAAACAGATTCCTAGC 1641
Query 1611 TGCAGAGGCAATGGCCCAAGCAAGAACTTTAGCAGAGGATGGAGATTTAGAGGCAGCCGT 1670
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1642 TGCAGAGGCAATGGCCCAAGCAAGAACTTTAGCAGAGCATGGAGATTTAGAGGCAGCCGT 1701
Query 1671 TAAAGCCATTGAAAATTTTAGATTGGTTTTGGCAGAGACGGTTGCAGCAAAATCCTGTGA 1730
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1702 TAAAGCCATTGAGAATTTTAGATTGGTTTTGGCAGAGACGGTTGCAGCAAAATCATGTGA 1761
Query 1731 CAGGTTTTGTGTTGCTTTGGACTCGGAACTGAAGGAAATGCAAGGTAGAATGAGGAGTAG 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762 CAGGTTTTGTGTTGCTTTGGACTCGGAACTGAAGGAAATGCAAGGTAGAATGAGGAGTAG 1821
Query 1791 TCACGTCTATGAGGCATCGGGAAGAGCTTATATTCTTTCTGGACTTAGCTCACACTCATG 1850
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 TCACATGTACGAGGCATCGGGAAGAGCTTATATTCTTTCTGGACTTAGCTCACACTCATG 1881
Query 1851 GCAAAGAGCAACAGCGAGGGGAAATTCAAGGGAC--TT-----T--GTCCAGGCTTATCA 1901
|||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 1882 GCAAAGAGCAACAGCGAGGGGAAATTCAAGGGACAGTTCGAGCTTTGTCCAGGCTTATCA 1941
Query 1902 GACTCCATCAATGGCTGAGATGCTACGTCGGTCACAGGCCATGTTACTGGTTAGTCCATC 1961
|||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||
Sbjct 1942 GACTCCATCAATGGCTGAGATGCTGCGTCGATCACAGGCCATGTTTCTAGTTAGTCCATC 2001
Query 1962 ACATCAAAGACTCATTCAGCCATTGCTGTCTTTTGCTTCACAACCAAAGCCAAGGTAA 2019
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2002 ACATCATAGACTCATTCAGCCCTTGCTCTCTTTTGCTTCACAACCAAAGCCAAGGTAA 2059
> AT2G38970.1 | Symbols: | Zinc finger (C3HC4-type RING finger)
family protein | chr2:16273901-16276872 FORWARD LENGTH=2534
Length=2534
Score = 632 bits (342), Expect = 4e-180
Identities = 695/859 (81%), Gaps = 49/859 (6%)
Strand=Plus/Plus
Query 1101 TCAGATCCCTGTTCACTCTTTTGGTTTTGGATCAGATCATGATGCTTCAGTGATGCACTC 1160
||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 1398 TCAGATCCCGGTTCATTCTTTTGGCTTTGGATCAGATCATGATGCTTCACTGATGCATTC 1457
Query 1161 TGTTTCTGAATTCTCTGGTGGAACCTTCTCTTTCATTGAAAGTGAGTCTGTGATCCAGGA 1220
|||||||||| |||||| || || |||||||||||||| ||||| ||||||||||| ||
Sbjct 1458 TGTTTCTGAAACCTCTGGGGGGACTTTCTCTTTCATTGAGAGTGAATCTGTGATCCAAGA 1517
Query 1221 TGCTCTTGCACAGTGCATTGGTGGACTTTTAAGCGTTGCAGTGCAGGAGTTACGAGT-AG 1279
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 1518 TGCTCTTGCTCAGTGCATTGGTGGACTTTTAAGCGTTGCAGTGCAGGAGCTACG-GTTAG 1576
Query 1280 AAATTGAAGGTGTGTGCCCA-AGTGTTCGA-CTTAGCTCGATAAAAGCTGGGAGTTACTC 1337
|||| || ||| ||||| || | ||||| | || ||||| |||||||| || |||||| |
Sbjct 1577 AAATCGAGGGTATGTGCTCAGA-TGTTC-ATCTCAGCTCAATAAAAGCCGGAAGTTAC-C 1633
Query 1338 T-AGCCTTGTAAATGGTGATGGCCAC-TCAGGAT-TGGTTGATCTTGGTGATCTTTATGC 1394
|||||||| | ||||||||| | || |||| || ||||| ||||||||||||| ||
Sbjct 1634 AGAGCCTTGTTAGTGGTGATGGT-AGGTCTGGATGTG-TTGATATTGGTGATCTTTACGC 1691
Query 1395 CGATGAAGAGAGGGATTTTTTGGTTTCTATCAACATCCCTGTTGAGGAAGATGGA--C-A 1451
||||||||| ||||||| ||| | ||| ||||||||||| | | |||||||| | |
Sbjct 1692 TGATGAAGAGCGGGATTTCTTGATATCTGTCAACATCCCTCCTCAAAAAGATGGAAACGA 1751
Query 1452 TACACCA-TTGCT-AAAGCTGAGATGTCTCTACATTGATCCCTTGACAAAGGAGATTACG 1509
|||||| || || ||| |||||||| |||||| |||| |||||||| || ||| |
Sbjct 1752 GACACCACTT-CTCAAAA-TGAGATGTGTCTACAAAGATCTTTTGACAAAAGAAATTGTG 1809
Query 1510 ACGGTTGAAAGTCCCGTGCTTCA-GATTCGTAGACCAGAATAT-GTTGCTGAAGAAGAAG 1567
||| || |||||| |||| || ||||| ||||||||| | |||| | |||||| |
Sbjct 1810 ACGCTTCAAAGTCATATGCT-CAAGATTCAAAGACCAGAA-ACCGTTGGTCAAGAAGTTG 1867
Query 1568 TTGTCCCCATCGAAGTGGTCAGGCAAAGAAATAGATT-CTTAGCTGCAGAGGCAATGGCC 1626
|||| |||||||||||| |||||||||||| ||||| || |||||| ||||||||||
Sbjct 1868 TTGTTTCCATCGAAGTGGACAGGCAAAGAAACAGATTTCT-AGCTGCGGAGGCAATGGTA 1926
Query 1627 CAAG-CAAGAACTTTAGCAGAG-GATGGAGATTTAGAGGCAGCCGTTAAAGCCATTGAAA 1684
||| | ||| |||||||||| || | |||||||| |||| || | ||||| | |
Sbjct 1927 -AAGGCGAGAGCTTTAGCAGAAAGA-GAAGATTTAGCCGCAGGTGTCACTGCCATCCAGA 1984
Query 1685 ATTTTAGATTGGTTTTGGCAGAGACGGT-TGCAGCAAAATCCTGTGACAGGTTTTGTGTT 1743
|||| ||| ||| ||||||||||| || | |||| ||||| |||| ||||||||||
Sbjct 1985 ATTTCAGAGTGGCGTTGGCAGAGACAGTCT-CAGCGAAATCGGGTGATGGGTTTTGTGTG 2043
Query 1744 GCTTTGGACTCG-GAACTGAAGGAAATGCAAGGTAGAATGAG-GAGTAGTCACGTCTATG 1801
||||||||| | || || ||||||||||||| |||||| | |||||| || ||||| |
Sbjct 2044 GCTTTGGACA-GAGAGCTAAAGGAAATGCAAGAAAGAATG-GCGAGTAGGCATGTCTACG 2101
Query 1802 AGGCATCGGGAAGAGCTTATATTCTTTCTGGACTTAGCTCACACTCATGGCAAAGAGCAA 1861
||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2102 AGGTATCGGGAAGAGCTTACATTCTTTCTGGACTTAGTTCACACTCATGGCAAAGAGCAA 2161
Query 1862 CAGCGAGGGGA-AATTCA--AG--GG---A--CTTTGTCCAGGCTTAT--C-AGACTCCA 1908
|| | || ||| ||| || || || | ||||||||| |||||| | | ||||||
Sbjct 2162 CATCAAGAGGAGAAT-CAGGAGATGGTTCAAGCTTTGTCCAAGCTTATTACCAAACTCCA 2220
Query 1909 TCAATGGCTGAGATGCTAC 1927
||||||| ||||||| |||
Sbjct 2221 TCAATGGTTGAGATGTTAC 2239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100049686185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5