BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324009
Length=2283
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54790.1 | Symbols: | ARM repeat superfamily protein | chr3... 3746 0.0
> AT3G54790.1 | Symbols: | ARM repeat superfamily protein | chr3:20281535-20285126
REVERSE LENGTH=2782
Length=2782
Score = 3746 bits (2028), Expect = 0.0
Identities = 2199/2284 (96%), Gaps = 2/2284 (0%)
Strand=Plus/Plus
Query 1 ATGGATCCTGTGCCTTTTCGATGTCTTCTTAACAGTATATCTCGGTATCTTCATCTGGTC 60
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 ATGGATCCTGTTCCTGTTCGATGTCTTCTTAACAGTATATCTCGGTATCTTCATCTGGTT 264
Query 61 GCGTGCCAGACCATAAGATTTAATCCTATCCAGTCATGTATTGGAAATATGGTTCTCTTG 120
||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 265 GCGTGCCAGACTATAAGATTTAATCCTATTCAAACATGTATTGGAAATATGGTTCTCTTG 324
Query 121 TTGAAGCTCTTGAAACCGTTGCTCGATGAAGTTGTTGATTGCAAGATACCTTCTGATGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 TTGAAGCTCTTGAAACCGTTGCTCGATGAAGTTGTTGATTGCAAGATACCTTCTGATGAC 384
Query 181 TGCTTATATAAAGGATGTGAAGACCTTGATTCTGTTGTTAACCAGGCTCGGGAGTTCTTA 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 TGTTTATATAAAGGATGTGAAGACCTTGATTCTGTTGTTAACCAGGCTCGGGAGTTCTTA 444
Query 241 GAGGACTGGTCACCAAAGTTGAGCAAGCTGTTTGGTGTGTTTCAATGCGAGGTTTTGTTG 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 445 GAGGACTGGTCACCAAAGTTGAGCAAGTTGTTTGGTGTGTTTCAATGCGAGGTTTTGTTG 504
Query 301 GGAAAGGTCCAAACTTGTTCCTTGGAGATTAGTCGCATACTTCTTCAGTTATCACAGTCA 360
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 505 GGAAAGGTCCAGACTTGTTCGTTGGAGATTAGTCGCATACTTCTTCAGTTATCACAGTCA 564
Query 361 AGTCCGGAAACTTCAAGCGTACAAGGTGTAGAGCGCTGCGTGCAGGAGATTGAGAGTTTT 420
||||||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||||
Sbjct 565 AGTCCGGTTACTTCAAGCGTACAAAGTGTTGAGCGCTGCGTGCAGGAGACTGAGAGTTTT 624
Query 421 AAGCAAGAGGGGACATTAACCGAGCACATGGAGAATGCTTTACGGAATCAGAAAGATGAT 480
||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 625 AAGCAAGAGGGGACATTAATGGAACTCATGGAGAATGCTTTACGGAATCAGAAAGATGAT 684
Query 481 ATTGCCTCTTTGGATAACAATCATCTGGAAAGCATAATTCAAATGCTTGGATTGATATCA 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 ATTACCTCTTTGGATAACAATCATCTGGAAAGCATAATTCAAATGCTTGGATTGATATCA 744
Query 541 AACCAGGATCTCTTAAAGGAAAGCATTGCTGTGGAGAAGGAGAGGACAAGATCCCAGGCC 600
||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||
Sbjct 745 AACCAAGATCTCTTAAAGGAAAGCATTACTGTGGAGAAAGAGAGGATAAGATCCCAGGCC 804
Query 601 AGCAAGTCGA-AAGAAGATATGGAACAAACCGAACAATTGATAGAACTCGTCTTGTGCAT 659
|| ||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 805 AGTAAGTC-AGAAGAAGATATGGAACAAACCGAACAGTTGATAGAACTCGTCTTGTGCAT 863
Query 660 CCGTGAACACATGCTTAAAACTGAGTTTCTTGAAGTGGCTAAAGGTATCTCGATACCCCC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 CCGTGAACACATGCTTAAAACTGAGTTTCTTGAAGTGGCTAAAGGTATCTCGATACCCCC 923
Query 720 GTATTTCCGATGTCCTTTGTCAACGGAACTCATGCTGGATCCGGTAATAGTAGCTTCAGG 779
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 924 GTATTTCCGGTGTCCTTTGTCAACAGAACTCATGCTGGATCCGGTAATAGTAGCTTCAGG 983
Query 780 ACAGACATTTGACAGAACATCCATTAAGAAATGGCTTGATAACGGGTTAGCTGTTTGTCC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 ACAGACATTTGACAGAACATCCATTAAGAAATGGCTTGATAACGGGTTAGCTGTTTGTCC 1043
Query 840 CAGGACGCGGCAGGTGCTGACTCATCAAGAACTCATTCCAAATTACACGGTTAAGGCTAT 899
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1044 AAGGACGCGGCAGGTGCTGACTCATCAAGAACTCATTCCCAATTACACGGTTAAGGCTAT 1103
Query 900 GATAGCGAGTTGGTTGGAGGCAAACAGGATCAACATTGCTGCAAACTCTTGTCATCAGCA 959
|||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |
Sbjct 1104 GATAGCGAGTTGGTTGGAGGCAAACAGGATCAACCTTGCTACTAACTCTTGTCATCAGTA 1163
Query 960 TGATGGTGGTGATGCTTCATCCATGGCTAATAATATGGGTTCTCAAGACTTTAACCGCAC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TGATGGTGGTGATGCTTCATCCATGGCTAATAATATGGGTTCTCAAGACTTTAACCGCAC 1223
Query 1020 CGAGAGTTTTCGTTTTTCTCTACGGAGTAGCAGTTTTACCTCAAGATCATCTCTTGAAAC 1079
||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct 1224 CGAGAGTTTTCGTTTTTCTTTACGGAGCAGCAGTTTAACCTCAAGATCATCTCTTGAAAC 1283
Query 1080 TGGAAATGGGTTTGAGAAACTAAAGATCAACGTGCCTGTCAGTTTATGTGGGGAATCTCA 1139
||||||||||||||||||||| ||||| |||||| ||| ||||||||| |||||||||||
Sbjct 1284 TGGAAATGGGTTTGAGAAACTGAAGATTAACGTGTCTGCCAGTTTATGCGGGGAATCTCA 1343
Query 1140 AAGCAAGGATCTTGAGATATTTGAACTTTTGTCTCCAGGGCAGTCGTACACTCACAGCAG 1199
||||||||||||||| ||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct 1344 AAGCAAGGATCTTGAAATATTCGAGCTTTTGTCTCCGGGGCAGTCTTACACTCACAGCAG 1403
Query 1200 GAGTGAATCAGTTTGCAGTGTTGTCTCGTCTGTTGATTATGTGCCTTCGGTGACACATGA 1259
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1404 GAGTGAATCAGTTTGCAGTGTTGTCTCGTCTGTTGATTATGTACCTTCGGTGACACATGA 1463
Query 1260 GACAGAAAGTATACTAGGGAATCACCAAAGCTCCAGTGAGATGTCTCCCAAGAAAAACTC 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 GACAGAAAGTATACTAGGGAATCACCAAAGCTCCAGTGAGATGTCTCCCAAGAAAAACTT 1523
Query 1320 AGAAAGTTCAAGCAATGTAAATCATGAGCATAACGCAGCGAAGACTTATGAGTGTTCTGT 1379
||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1524 AGAAAGTTCAAACAATGTAAATCATGAGCATAGCGCAGCAAAGACTTATGAGTGTTCTGT 1583
Query 1380 ACAGGATTTAGATGATTCAGGAACAATGATGACTTCACATACCATAAAATTGGTAGAAGA 1439
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1584 ACATGATTTAGATGATTCAGGAACAATGACGACTTCACATACCATAAAATTGGTAGAAGA 1643
Query 1440 TCTTAAAAATGGATCTAACAAAGTGAAGACTGCTGCTGCAGCTGAAATACGTCAGCTCAC 1499
|||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1644 TCTTAAAAGCGGGTCTAACAAAGTGAAGACTGCTGCTGCAGCTGAAATACGTCATCTCAC 1703
Query 1500 CATTAACAGCATTGAAAATCGTGTTCATATCGGGCGTTGTGGTGCAATCACTCCACTGCT 1559
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1704 CATTAACAGCATTGAAAATCGTGTTCACATCGGGCGTTGTGGTGCTATTACTCCACTGCT 1763
Query 1560 GTCACTTTTATACTCAGAAGAAAAGCTAACCCAAGAACACGCAGTCACGGCTCTTCTGAA 1619
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1764 GTCACTTTTATACTCAGAAGAAAAGCTAACTCAAGAACACGCAGTCACGGCTCTTTTGAA 1823
Query 1620 CCTTTCGATCAGTGAACTAAACAAAGCCATGATTGTGGAAGCCGGGGCGATAGAACCGCT 1679
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1824 TCTTTCCATCAGTGAACTAAACAAAGCCATGATTGTGGAAGTCGGGGCGATAGAACCGCT 1883
Query 1680 TGTTCATGTTTTGAACACAGGAAATGACAGAGCCAAAGAGAATTCAGCAGCATCATTGTT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1884 TGTTCATGTTTTGAACACAGGAAATGACAGAGCCAAAGAGAATTCAGCAGCATCATTGTT 1943
Query 1740 CAGTCTGTCTGTTCTGCAGGTCAACAGAGAACGGATAGGCCAGTCCAACACAGCGATACA 1799
||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 1944 CAGTCTGTCTGTTCTGCAGGTCAACAGAGAACGAATAGGCCAGTCTAACGCAGCGATACA 2003
Query 1800 GGCTCTGGTGAATCTTCTTGGTAAAGGAACATTTAGAGGAAAGAAAGACGCTGCCTCTGC 1859
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2004 AGCTCTGGTGAATCTTCTTGGTAAAGGAACATTTAGAGGAAAGAAAGACGCCGCCTCTGC 2063
Query 1860 TTTGTTCAATCTATCGATAACTCATGATAACAAGGCCCGTATCGTGCAAGCTAAGGCGAT 1919
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 2064 TTTGTTCAATCTATCGATTACTCATGATAACAAGGCCCGTATCGTGCAAGCTAAGGCGGT 2123
Query 1920 TAAGTATCTTGTAGAGCTGTTGGACCCAGATTTAGAGATGGTTGATAAAGCAGTTGCTCT 1979
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2124 TAAGTACCTTGTGGAGCTGTTAGACCCAGATTTAGAGATGGTTGATAAAGCAGTTGCTCT 2183
Query 1980 TCTTGCAAATCTTTCTGCAGTCGGAGAAGGGCGTCAAGCCATCGTGAGGGAAGGTGGGAT 2039
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2184 TCTTGCAAATCTTTCTGCAGTTGGAGAAGGGCGTCAAGCCATCGTGAGGGAAGGTGGGAT 2243
Query 2040 CCCATTGCTTGTTGAGACGGTTGACTTAGGATCTCAGAGAGGGAAAGAGAATGCAGCTTC 2099
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2244 TCCATTACTTGTTGAAACTGTTGACTTAGGATCTCAGAGAGGGAAAGAGAATGCAGCTTC 2303
Query 2100 TGTGCTGCTTCAGTTGTGTCTGAACAGTCCCAAGTTTTGCACTCTGGTCTTGCAAGAAGG 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2304 TGTGCTGCTTCAGTTGTGTCTGAACAGTCCCAAGTTTTGCACTCTGGTCTTGCAAGAAGG 2363
Query 2160 CGCCATACCTCCGCTTGTTGCCTTGTCTCAGTCTGGTACACAGAGAGCAAAAGAGAAGGC 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2364 CGCCATACCTCCGCTTGTTGCCTTGTCTCAGTCTGGTACACAGAGAGCAAAAGAGAAGGC 2423
Query 2220 ACAGCAACTTCTCAGCCACTTCCGAAACCAGAGAGATGCAAGGATGAAGAAAGGTAGATC 2279
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2424 ACAGCAACTTCTTAGCCACTTCCGAAACCAGAGAGATGCAAGGATGAAGAAAGGTAGATC 2483
Query 2280 ATGA 2283
||||
Sbjct 2484 ATGA 2487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113302630065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5