BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324014
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54830.1 | Symbols: | Transmembrane amino acid transporter ... 1969 0.0
AT2G39130.1 | Symbols: | Transmembrane amino acid transporter ... 795 0.0
AT3G54826.1 | Symbols: | Zim17-type zinc finger protein | chr3... 335 9e-91
> AT3G54830.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr3:20311901-20315030 REVERSE LENGTH=1641
Length=1641
Score = 1969 bits (1066), Expect = 0.0
Identities = 1197/1258 (95%), Gaps = 17/1258 (1%)
Strand=Plus/Plus
Query 1 ATGAATCACTCGGCTTCTGATCAGAGCCTCTACATCGAGAGTGATGAAGGAGATGACGAG 60
||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAATCACTCCACTTCTGACCAGAGCCTCTACATCGAGAGTGATGATGGAGATGACGAG 60
Query 61 AGAAAACACTTGTCAGACGATGAAGACGACGATGGAACACTTTCTGATTCTTCTGACGCT 120
|||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 61 AGAAAACACTTGTCCGACGATGAAGACGACGATGGAACTCTTTCTGATACTTCTGACGCT 120
Query 121 TACAATCAAAACC-A-A-CATCTATCTAAAGCTAGCCCATACTCAACGGCATGGCCAAAG 177
||||||||||||| | | ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 121 TACAATCAAAACCAACATCATCTGTCTAAAGCTAGCCCATACTCAACGGCATGGCCTAAG 180
Query 178 AGTTATAGGCAATCGATTGATATGTTTGGAAGTGTACCAATACCATCACCAAATTTGGGT 237
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 AGTTATAGGCAATCGATTGATATGTTTGGAAGTG------TACCATCACCAAATTTGGGT 234
Query 238 TTTCTTGCTAATTCTTCAATGTCGAG-AGTAGGAAGCTCTTTCTTGTCTTCGACACTGAC 296
||||||||||||||||| |||||||| || ||||||||| ||| ||||||||||||||||
Sbjct 235 TTTCTTGCTAATTCTTCTATGTCGAGAAG-AGGAAGCTCATTCATGTCTTCGACACTGAC 293
Query 297 AAGAAGACATACTCCAGAATCATTACCATGTGTTACAAAACCTCTCCTAGTAGATGAAGA 356
||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 294 AAGAAGACATACTCCAGAATCATTACCTTGTGTTACAAAGCCTCTCCTAGAAGATGAAGA 353
Query 357 AGCACCAAAGCATAAGCATAGCTCTCATTCCCTGCTTCCGTTGAAACCA---TCATCCA- 412
||||||||| ||||| | |||| ||||||| ||||||||| ||||||| |||||||
Sbjct 354 AGCACCAAAACATAAACTTAGCACTCATTCTTTGCTTCCGTCGAAACCATCGTCATCCAT 413
Query 413 --TGGTGTCTCATGAAATGGCAATCTCCAATGATAGCTCGTTTGGACAGGCTGTTCTTAA 470
||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 414 GGTGGTGTCTCATGATATGGGAATCTCCAATGATAGCTCCTTTGGACAGGCTGTTCTTAA 473
Query 471 TGGAGTGAATGTTTTATGTGGGGTTGGAATATTGTCAACACCATATGCTGTGAAGGAAGG 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TGGAGTGAATGTTTTATGTGGGGTTGGAATATTGTCAACACCATATGCTGTGAAGGAAGG 533
Query 531 AGGATGGTTGGGACTTATCATTCTCTTTGCATTTGGTATTCTTTGTTTTTACACCGGTTT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGGATGGTTGGGACTTATCATTCTCTTTGCATTTGGTATTCTTTGTTTTTACACCGGTTT 593
Query 591 GCTTTTGCGGTACTGCCTCGATAGCCACCCCGATGTCCAGACCTATCCTGATATTGGCCA 650
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 594 GCTTCTGCGGTACTGCCTCGACAGCCACCCCGATGTCCAGACCTATCCTGATATTGGCCA 653
Query 651 TGCCGCTTTTGGTTCCACCGGCCGCATCCTGGTCTCTGTAATACTCTATATGGAGCTATA 710
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 654 TGCCGCTTTTGGTTCCACCGGCCGCATCCTGGTCTCCGTAATACTCTATATGGAGTTATA 713
Query 711 TGCTATGAGTGTTGAATACATAATTTTGGAAGGTGATAATCTTTCATCAATGTTTCCAAA 770
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 714 TGCTATGAGTGTTGAATACATAATATTGGAAGGTGATAATCTTTCATCAATGTTTCCAAA 773
Query 771 TGCTAGTCTAAGTATTGGAGGGTTTCACTTAGATGCGCCTCGTCTATTTGCTCTGCTTAC 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGCTAGTCTAAGTATTGGAGGGTTTCACTTAGATGCGCCTCGTCTATTTGCTCTGCTTAC 833
Query 831 CACCCTCGCTGTTCTCCCAACCGTATGGCTTCGAGACCTCAGCGTACTAAGTTACATATC 890
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 834 CACCCTCGCTGTTCTCCCAACCGTTTGGCTTCGAGATCTCAGCGTACTAAGTTACATTTC 893
Query 891 AGCTGGAGGGGTGATTGCATCAGtgttggtggttttgtgcttgttttgggttggtttggt 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AGCTGGAGGGGTGATTGCATCAGTGTTGGTGGTTTTGTGCTTGTTTTGGGTTGGTTTGGT 953
Query 951 tgatgatgttggtATTCACAGCAAAGGAACTCCACTAAACCTCGCAACATTGCCGGTTTC 1010
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 954 TGATGATGTTGGTATTCACAGCAAAGGAACTCCACTAAACCTCGCAACATTACCGGTTTC 1013
Query 1011 TGTAGGACTCTATGGTTATTGTTACTCAGGACATGGTGTTTTCCCAAATATATATACTTC 1070
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1014 TGTAGGACTCTATGGTTATTGTTACTCAGGACATGGTGTTTTCCCTAATATTTACACTTC 1073
Query 1071 TATGGCCAAACCATCTCAATTTCCTGCTGTTCTCTTGGCATCTTTTGGAATTTGCACTCT 1130
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1074 AATGGCCAAACCATCTCAATTTTCTGCTGTTCTCTTGGCATCTTTTGGAATTTGTACTCT 1133
Query 1131 GATGTATGCGGCTGTGGCTGTTATGGGATATAGCATGTTTGGAGAATCAACAGAATCACA 1190
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TATGTATGCGGGTGTTGCTGTTATGGGATATAGCATGTTTGGAGAATCAACAGAATCACA 1193
Query 1191 GTTTACTCTTAACCTGCCTCAAGATTTGGTTGCATCTAAGATTGCTTTGTGGACTACA 1248
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GTTTACTCTTAACTTGCCTCAAGATTTGGTTGCATCTAAGATTGCTTTGTGGACTACA 1251
Score = 211 bits (114), Expect = 2e-53
Identities = 120/123 (98%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 1283 TTGCAATGAGTCTTGAGGAGTTAATACCATCAAACCATGGGAAGTCACGTTTCTACTCAA 1342
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1316 TTGCAATGAGTCTTGAGGAGTTAATACCATCAAACTATGGGAAGTCACGTTTCTACGCAA 1375
Query 1343 TCGCCATTAGAAGTGCATTAGCCTTCTCTACTCTGCTCGTTGGTCTTGCGATTCCCTTCT 1402
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1376 TCGCCATTAGAAGTGCATTAGCCATCTCTACTCTGCTCGTTGGTCTTGCGATTCCCTTCT 1435
Query 1403 TCG 1405
|||
Sbjct 1436 TCG 1438
Score = 102 bits (55), Expect = 1e-20
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 1405 GACGCTGATACTACCGCCAGCTTGTTTCTTAAGCATCTTAAGGCGAAAAGTAACCCCTAC 1464
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1495 GACGCTGATACTACCGCCAGCTTGTTTCTTGAGCATCTTAAGGAAAAAAGTAACCCCTAC 1554
Query 1465 TCAG 1468
||||
Sbjct 1555 TCAG 1558
> AT2G39130.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr2:16322956-16327266 REVERSE LENGTH=2067
Length=2067
Score = 795 bits (430), Expect = 0.0
Identities = 835/1026 (81%), Gaps = 45/1026 (4%)
Strand=Plus/Plus
Query 405 ATCATCCATGGTGTCTCATGAAATGGCAATCTC-CAATGATAGCTCGTTTGGACAGGCTG 463
||||||||||||||||||||| || |||| || | | ||||||| | ||||| ||||
Sbjct 637 ATCATCCATGGTGTCTCATGAGATTCCAATGTCTC-GTAATAGCTCATACGGACAAGCTG 695
Query 464 TTCTTAATGGAGTGAATGTT-TTATGTGGGGTTGGAATA-TTGTCAACACCATATGCTGT 521
| || |||||| |||| ||| || ||||||||||||||| || ||||| || |||||||
Sbjct 696 TACTAAATGGATTGAACGTTCTT-TGTGGGGTTGGAATACTT-TCAACGCCTTATGCTGC 753
Query 522 GAAGGAAGGAGGATGGTTGGGACTTATCATTCTCTTTGCATTTGGTATTCTTTGTTTTTA 581
|| |||||||||||||| |||||||| || || |||| || |||| |||||| ||| ||
Sbjct 754 CAAAGAAGGAGGATGGTTAGGACTTATGATACTATTTGTATATGGTCTTCTTTCTTTCTA 813
Query 582 CACCGGTTTGCT-TTTGCGGTACTGCCTCGATAGCCACCCCGATGTCCAGACCTATCCTG 640
|||||| | || || || || |||||||| || | | || || | |||||||| |
Sbjct 814 CACCGGAATCCTCCTT-CGTTATTGCCTCGACAGTGAGTCTGACCTCGAAACCTATCCCG 872
Query 641 ATATTGGCCATGCCGCTTTTGGTTCCACCGGCCGCATCCTGGTCTCTG-TAATACTCTA- 698
| |||||||| || || |||||| | || || || ||| | ||||| | | |||||||
Sbjct 873 ACATTGGCCAAGCTGCGTTTGGTACTACTGGACGTATCTTTGTCTC-GATTGTACTCTAC 931
Query 699 TATGGAGCTATATGCTATG-AGTGTTGAATACATAATTTTGGAAG-GTGATAATCTT-TC 755
| |||||||||| || ||| |||| ||||| ||||| |||| || |||||||| || ||
Sbjct 932 T-TGGAGCTATACGC-ATGCTGTGTGGAATATATAATATTGG-AGAGTGATAAT-TTGTC 987
Query 756 ATCAATGTTTCCAAATGCTAGTC-TAAGTATTGGAGGGTTTCACTTAGATGCGC-CTCGT 813
||| | | |||||||||| | | ||||||||||||| ||||| |||||||| | | | |
Sbjct 988 TTCATTATATCCAAATGCT-GCCTTAAGTATTGGAGGATTTCAGTTAGATGCACGC-CAT 1045
Query 814 CTATTTGC-TCTGCTTACCACCCTCGCTGTTCTCCCAACCGTATGGCTTC-GAGACCTCA 871
|||||||| | |||| ||||| ||||| |||||||| ||||| |||| || |||| ||||
Sbjct 1046 CTATTTGCAT-TGCTAACCACTCTCGCCGTTCTCCCCACCGTTTGGC-TCAGAGATCTCA 1103
Query 872 GCGTACTAAGTTACATATCAGCTGGAGGGGTGATTGCATCAGtgttggtggttttgtgct 931
||||||| ||||| || || |||||||||||||||||||||||| | |||||||| || |
Sbjct 1104 GCGTACTTAGTTATATCTCTGCTGGAGGGGTGATTGCATCAGTGCTAGTGGTTTTATGTT 1163
Query 932 tgttttgggttggtttggttgatgatgttggtATTCACAGCAAAGGAACTCCACTAAACC 991
|||||||| |||||||||| ||||| ||||| |||||||||||||||||| ||||||| |
Sbjct 1164 TGTTTTGGATTGGTTTGGTAGATGAAGTTGGAATTCACAGCAAAGGAACTACACTAAA-C 1222
Query 992 TCG-CAACATTGCCGGTTTCTGTAGGACTCTATGGTTATTGTTACTCAGGACATGGTGTT 1050
| | ||||||| || || || |||||||||||||||| || ||||||||||||| ||||
Sbjct 1223 TTGTCAACATTACCTGTGGCTATAGGACTCTATGGTTACTGCTACTCAGGACATGCTGTT 1282
Query 1051 TTCCCAAATATATATACTTCTATGGCCAAACCATCTCAATTTCCTGCTGTTCTCTTGGCA 1110
||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1283 TTCCCCAATATTTATACTTCTATGGCCAAACCATCTCAATACCCTGCTGTTCTCTTGACA 1342
Query 1111 TCTTTTGGAATTTGCACTCTGATGTATGC-GGCTGTGGCTGTTATGGGATATA-GCATGT 1168
| |||||| ||||| |||||||||||||| ||| || ||||||||||| |||| | ||||
Sbjct 1343 TGTTTTGGTATTTGTACTCTGATGTATGCCGGC-GTCGCTGTTATGGGTTATACG-ATGT 1400
Query 1169 TTGGAGAATCAACAGAATCACAGTTTACTCTTAACCTGCCTCAAGATTTGGTTGCATCTA 1228
|||||||||||||| | |||||||||||||| ||| ||||||||||||| ||||| |||
Sbjct 1401 TTGGAGAATCAACACAGTCACAGTTTACTCTCAACTTGCCTCAAGATTTAATTGCAACTA 1460
Query 1229 AGATTGCTTTGTGGACTACAAAAGA-AAGC-A----C-A--TATGCTTTGAC-ATTATCT 1278
|||||||| |||||||||| | || | | | | ||||||||||| || ||||
Sbjct 1461 AGATTGCTGTGTGGACTACGGTGGTCAATCCATTTACCAAATATGCTTTGACCAT-ATCT 1519
Query 1279 CCGGTTGCAATGAGTCTTGAGGAGTTAATACCATCAAACCATGGGAAGTCACGTTTCTAC 1338
|| || |||||||||||||||||||| |||||||||| ||| | ||||| || |||
Sbjct 1520 CCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATCAGGTCACATTGGTAC 1579
Query 1339 TCAATCGCCATTAGAAGTGC-ATTAGCCTTCTCTACTCTGCTCGTTGGTCTTGCGATTCC 1397
| |||| |||||||| | ||| | ||||||||||||||| |||||||| || |||||
Sbjct 1580 GCCATCGGCATTAGAACC-CTATTGGTCTTCTCTACTCTGCTTGTTGGTCTCGCTATTCC 1638
Query 1398 CTTCTT 1403
||||||
Sbjct 1639 CTTCTT 1644
> AT3G54826.1 | Symbols: | Zim17-type zinc finger protein | chr3:20310327-20311821
FORWARD LENGTH=868
Length=868
Score = 335 bits (181), Expect = 9e-91
Identities = 201/211 (95%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 1467 AGATCTTGTATCACAGACCTTGCAAGTGAAGACCATCATGAAATCATGCCGCGGGTTTAT 1526
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 474 AGATCTTGTATCACAGACCTTGCAAGTGAAGACCATCATGAAGTCATGCCTCGGGTTTAT 415
Query 1527 TTTTAACTGGGACTTGTACTTCACCATCATTTCCTCAGAGGCCGTCGCAGCGGAGGGAAC 1586
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 414 TTTTAACTGGGACTTGTACTTCACCATCATTTCCTCAGAGGGCGTCGCAGGGGAGGGAAC 355
Query 1587 TTTGGCCGTTTCAGTAGCAGAGTTTGAAGAGTTGCAGACATTGGTTACTGGAGCTTCATT 1646
|||||||| |||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 354 TTTGGCCGATTCAGTAGCAGAGTTTGACGAGTTGCAGACATTGGTTACAGAAGCTTCATT 295
Query 1647 TGCCTCACGGATGACAGATAATTGTCTCTGA 1677
|||||||||||| |||||||| |||||||||
Sbjct 294 TGCCTCACGGATTACAGATAACTGTCTCTGA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82881099795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5