BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324018
Length=3156
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54870.1 | Symbols: MRH2, ARK1, CAE1 | Armadillo/beta-cateni... 4457 0.0
> AT3G54870.1 | Symbols: MRH2, ARK1, CAE1 | Armadillo/beta-catenin
repeat family protein / kinesin motor family protein | chr3:20330806-20336717
FORWARD LENGTH=3497
Length=3497
Score = 4457 bits (2413), Expect = 0.0
Identities = 2640/2752 (96%), Gaps = 6/2752 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCTTCAAACTCCTCCTCCGCTGTCAGATCGTCGGCGAAACACGCGGCGGAGCGA 60
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTCGTCAAATTCCTCCTCCGCCGTCAGATCGTCGGCGAAACACGCGGCGGAGCGA 60
Query 61 ATTCAGCAACACTTGCCTCCCAACAGCAATCACGCTGTATCTCTCTCTTCTTCTTCCTTG 120
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 ATTCAGCAGCACTTGCCTCCCAACAGCAATCACGCGGTATCTCTCTCTTCTTCTTCCTTG 120
Query 121 AATTTACCTTCTAGAACATCTATCATCGCTCCCGGAGTTGCACACTCTTCTCGCCCTAAA 180
||||| ||| ||||||| |||||| ||||||||||| | |||||||||||||||| ||||
Sbjct 121 AATTTGCCTGCTAGAACCTCTATCGTCGCTCCCGGAATAGCACACTCTTCTCGCCTTAAA 180
Query 181 GATCGACCCTCCGCTTCCT-CTATCTCCAAC-GCTTCCTCCGTCTCCGCCTCTTCTCCTT 238
||||||||||||||||||| || |||| | | ||||| ||||||||||||||||| |
Sbjct 181 GATCGACCCTCCGCTTCCTCCT-CCTCC-TCTTCGTCCTCTGTCTCCGCCTCTTCTCCCT 238
Query 239 CTACACGCCGCTCCGGCACTCCCGTCCGCCGATCCCAGTCCAAAGACTTCGACGACGACA 298
| ||||||||||||||||||||||| |||||||| || || |||||||||||||||||||
Sbjct 239 CCACACGCCGCTCCGGCACTCCCGTTCGCCGATCTCAATCGAAAGACTTCGACGACGACA 298
Query 299 ATGATCCCGGGAGGGTAAGAGTTTCTGTAAGAGTTCGACCTCGAAACGGAGAGGAGCTTA 358
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 ATGATCCTGGGAGGGTAAGAGTCTCTGTAAGAGTTCGACCTCGAAACGGAGAGGAGCTTA 358
Query 359 TCTCGGATGCTGATTTTGCTGATCTTGTTGAGTTACAACCAGAAATAAAGCGGCTTAAGT 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 TCTCGGATGCTGATTTTGCTGATCTTGTTGAGTTACAACCAGAAATAAAGAGGCTTAAGT 418
Query 419 TAAGGAAGAACAACTGGAATTCTGAGTCCTATAAATTTGATGAAGTCTTTACAGACACAG 478
| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 419 TGAGGAAGAACAACTGGAACTCTGAGTCATACAAATTTGATGAAGTCTTTACAGACACAG 478
Query 479 CTTCGCAAAAGCGTGTCTATGAAGGAGTAGCAAAACCTGTCGTCGAGGGTGTTCTGAGTG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTTCGCAAAAGCGTGTCTATGAAGGAGTAGCAAAACCTGTCGTCGAGGGTGTTCTGAGTG 538
Query 539 GATACAATGGTACCATTATGGCTTATGGTCAAACTGGCACCGGTAAAACTTACACGGTAG 598
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 539 GATACAATGGTACCATTATGGCTTATGGTCAAACCGGCACAGGTAAAACTTACACGGTTG 598
Query 599 GAAAAATTGGTAAAGATGATGCAGCTGAGCGTGGTATTATGGTTAGAGCTCTGGAGGACA 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 GAAAAATTGGTAAAGATGATGCAGCTGAGCGTGGTATTATGGTTAGAGCTCTGGAGGATA 658
Query 659 TTCTTCTCAACGCATCTTCTGCTTCTATCTCCGTCGAGATCTCTTATTTGCAGCTATATA 718
| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 659 TACTTCTCAACGCATCTTCTGCTTCGATTTCCGTCGAGATCTCCTATTTGCAGCTATATA 718
Query 719 TGGAAACTATACAAGATCTTCTTGCACCTGAGAAAAATAACATTTCAATCAATGAGGATG 778
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 719 TGGAAACTATACAAGATCTTCTTGCACCTGAGAAAAACAACATTTCAATCAATGAGGATG 778
Query 779 CTAAGACTGGGGAAGTATCAGTGCCAGGCGCTACAGTAGTTAACATTCAAGATTTAGACC 838
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 CAAAGACTGGGGAAGTATCAGTACCAGGCGCTACAGTAGTTAACATTCAAGATTTAGACC 838
Query 839 ATTTCTTGCAGGTTTTGCAAGTCGGTGAGACAAACCGTCATGCAGCAAATACAAAGATGA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATTTCTTGCAGGTTTTGCAAGTCGGTGAGACAAACCGTCATGCAGCAAATACAAAGATGA 898
Query 899 ATACAGAATCCTCACGTAGTCATGCCATTCTTACGGTTTATGTTAGGCGGGCTATGAATG 958
||||||||||||| ||||||||||| |||||||||||||| ||||| || ||||||||||
Sbjct 899 ATACAGAATCCTCTCGTAGTCATGCAATTCTTACGGTTTACGTTAGACGTGCTATGAATG 958
Query 959 AAAAGTCTGAAAAGGCAAAACCTGAATCATTGGGAGATAAAGCCATTCCTAGAGTTAGAA 1018
|||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 959 AAAAAACTGAGAAGGCAAAACCGGAATCATTGGGAGATAAAGCCATTCCTAGAGTTAGAA 1018
Query 1019 AGAGCAAACTTCTAATTGTTGATCTTGCTGGTTCAGAAAGAATAAATAAATCTGGCACTG 1078
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 1019 AGAGCAAACTACTAATTGTTGATCTTGCTGGTTCCGAAAGAATTAATAAATCTGGAACTG 1078
Query 1079 ATGGCCACATGATTGAGGAGGCAAAATTCATCAATCTTTCACTGACATCCCTGGGAAAAT 1138
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ACGGCCACATGATTGAAGAAGCAAAATTCATCAATCTTTCACTGACATCCCTGGGAAAAT 1138
Query 1139 GCATAAATGCGTTAGCTGAAGGCAGTTCTCATATACCAACAAGAGATTCTAAGCTAACAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GCATAAATGCGTTAGCTGAAGGCAGTTCTCATATACCAACAAGAGATTCTAAGCTAACAA 1198
Query 1199 GGCTTCTTCGTGATTCTTTTGGGGGTTCTGCGAGGACTTCACTTATAATAACAATTGGGC 1258
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GGCTTCTGCGTGATTCTTTTGGGGGTTCTGCGAGGACTTCACTTATAATAACAATTGGGC 1258
Query 1259 CATCTGCACGGTATCATGCAGAAACCACTAGCACAATAATGTTTGGACAAAGGGCAATGA 1318
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CATCTGCACGTTATCATGCAGAAACCACTAGCACAATAATGTTTGGACAAAGGGCAATGA 1318
Query 1319 AAATAGTAAACATGGTCAAGCTTAAAGAAGAATTTGATTATGAGAGTTTGTGTCGGAAGC 1378
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1319 AAATAGTAAACATGGTAAAGCTTAAGGAAGAATTTGATTATGAGAGTTTGTGTCGGAAGC 1378
Query 1379 TTGAGACTCAGGTGGACCATCTTACTGCAGAAGTTGAAAGACaaaacaaactaagaaata 1438
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1379 TTGAGACTCAGGTGGACCATCTTACTGCAGAAGTCGAAAGACAAAACAAACTAAGAAATA 1438
Query 1439 gtgaaaaacttgagttagaaaaaagattgagagaatgtgaaaacTCCTTCGCTGAAGCAG 1498
|||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GTGAGAAACATGAGTTGGAAAAAAGATTGAGAGAATGTGAAAACTCCTTCGCTGAAGCAG 1498
Query 1499 AAAAGAATGCGGTTACAAGGTCCAAGTTCCTGGAGAAGGAAAACACCCGCTTGGAGCTCA 1558
||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1499 AAAAGAACGCGGTTACTAGGTCAAAGTTTCTGGAGAAGGAAAACACCCGCTTGGAGCTCA 1558
Query 1559 GCATGAAAGAACTTTTGAAGGAAT-TACAACTGCAGAAAGATCAGTGTGATCTAATGCAT 1617
||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 1559 GCATGAAAGAACTTTTGAAGG-ATCTGCAACTGCAGAAAGATCAGTGTGATCTAATGCAT 1617
Query 1618 GACAAAGCCATACAATTAGAGATGAAACTGAAAAATACCAAGCAGCAACAGCTGGAAAAT 1677
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GACAAAGCCATACAGTTAGAGATGAAACTGAAAAATACCAAGCAGCAACAGCTGGAAAAT 1677
Query 1678 TCAGCATATGAGGCAAAACTTGCAGATGCCAGTCAAGTATATGAGaaaaaaaTTGCTGAA 1737
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1678 TCAGCATATGAGGCAAAACTTGCAGATACCAGTCAAGTATATGAGAAAAAAATTGCGGAG 1737
Query 1738 TTGGTTCAGCGGGTTGAGGATGAACAAGCCCGGTCAACAAACGCCGAGCATCAATTGAAT 1797
||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 1738 TTGGTCCAGCGGGTTGAGGATGAACAAGCACGGTCTACAAACGCCGAGCATCAATTGACT 1797
Query 1798 GAAATGAAAAATATTTTGAGTAAACAGCAGAAGTCTATTCATGAACAAGAGATGGGCAAC 1857
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1798 GAAATGAAAAATATTTTGAGTAAACAGCAGAAGTCTATTCATGAACAAGAGAAGGGCAAT 1857
Query 1858 TATCAATATCAAAGGGAACTTGCGGAAACCACTTACACATATGAATCTAAAATTGCAGAG 1917
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1858 TACCAATATCAAAGGGAACTTGCGGAAACCACTCACACATATGAATCTAAAATTGCAGAG 1917
Query 1918 CTGCAGAAGAAATTAGAAGATGAAAATGCTCGGTCTAACGCTGCAGAAGAGCAACTTAGA 1977
||||| |||||| | |||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1918 CTGCAAAAGAAACTGGAAGGTGAAAATGCTCGGTCTAACGCTGCAGAAGATCAACTTAGA 1977
Query 1978 CAAATGAAAAGACTTATAAGCGATCGCCAAGTTATATCACAGGAAAATGAAGAGGCAAAC 2037
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 CAAATGAAAAGGCTTATAAGCGATCGCCAAGTTATATCACAGGAAAATGAAGAGGCAAAC 2037
Query 2038 GAACTCAAGATAAAATTAGAAGAACTTTCACAAATGTATGAATCGACAGTAGATGAACTC 2097
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 GAACTTAAGATAAAATTAGAAGAACTTTCACAAATGTATGAATCGACAGTAGATGAACTC 2097
Query 2098 CAGACAATGAAATTAGACTATGATGACCTGCTCCACCAAAAGGAAAAACTTGGTGAAGAG 2157
|||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2098 CAGACAGTGAAACTAGACTATGATGATCTGCTCCAACAAAAGGAAAAACTTGGTGAAGAG 2157
Query 2158 GTTCGAGATGTGAAGGAAAGGCTCCTTTTGGAAGAAAAGCAGCGAAAGCAAATGGAGAGT 2217
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2158 GTTCGAGATATGAAGGAAAGGCTCCTTTTGGAAGAAAAGCAGAGAAAGCAAATGGAGAGT 2217
Query 2218 GAGCTTTCGAAACTAAAGAAGAATCTAAGGGAAAGTGAAAATGTTGTTGAGGAAAAGCGA 2277
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 GAGCTTTCAAAACTAAAGAAGAATCTAAGGGAAAGTGAAAATGTTGTTGAGGAAAAGCGA 2277
Query 2278 TATATGAAGGACGATCTTTCAAAAGGATCATCAGAATCTGGAGCTCAAACTGGCTCACAG 2337
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 2278 TATATGAAGGAAGATCTTTCAAAAGGATCAGCAGAATCTGGAGCTCAAACTGGCTCTCAG 2337
Query 2338 AGATCACAGGGGTTAAAAAAGTCGTTATCTGGTCAGAGAGCTACCATGGCGAGACTTTGT 2397
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2338 AGATCACAAGGGTTAAAAAAGTCGTTATCTGGTCAGAGAGCTACCATGGCTAGACTTTGT 2397
Query 2398 GAAGAAGTCGGAATTCAGAAGATCTTACAACTCATTAAGTCTGAAGACTTGGAAGTTCAA 2457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 GAAGAAGTCGGAATTCAGAAGATCTTACAACTCATTAAGTCTGAAGACTTGGAAGTTCAA 2457
Query 2458 ATTCAAGCAGTAAAAGTGGTTGCTAATCTAGCCGCTGAAGAGGCTAATCAGGTAAAGATT 2517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2458 ATTCAAGCAGTAAAAGTGGTTGCTAATCTAGCCGCTGAAGAGGCTAATCAGGTAAAGATT 2517
Query 2518 GTGGAGGAAGGGGGTGTAGAAGCTTTGCTTATGCTAGTCCAGTCATCTCAGAATTCAACG 2577
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2518 GTGGAGGAAGGGGGTGTAGAAGCTTTGCTTATGCTAGTCCAGTCATCTCAAAATTCAACG 2577
Query 2578 ATTCTCAGGGTGGCTTCTGGTGCAATTGCTAATTTAGCAATGAATGAGAAGAGTCAAGAT 2637
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2578 ATTCTCAGGGTGGCTTCTGGTGCAATTGCTAATTTAGCAATGAACGAGAAGAGTCAAGAT 2637
Query 2638 CTTATAATGAATAAAGGAGGTGCTCAACTCCTAGCAAAGATGGTGACTAAAACAGACGAC 2697
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2638 CTTATAATGAATAAAGGAGGTGCTCAACTCCTAGCAAAGATGGTGACTAAAACAGACGAT 2697
Query 2698 CCACAGACTCTAAGAATGGTAGCTGGTGCACTTGCCAATTTATGCGGGAACG 2749
||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 2698 CCACAGACTCTAAGAATGGTAGCTGGTGCGCTTGCCAATTTATGTGGGAACG 2749
Score = 682 bits (369), Expect = 0.0
Identities = 398/412 (97%), Gaps = 1/412 (0%)
Strand=Plus/Plus
Query 2746 AAC-GAGAAGTTTCTTAAGCTGCTGAAAGAAGAGGAAGGTATCAAGGGACTACTCACGAT 2804
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2892 AACAGAGAAGTTTCTTAAGCTGCTGAAAGAAGAGGAAGGCATCAAGGGACTACTCACTAT 2951
Query 2805 GGCACAATCTGGAAACATAGATATCATTGCTCAAGTGGCAAGAGGGATGGCAAATTTTGC 2864
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2952 GGCACAGTCTGGAAACATAGATATCATTGCTCAAGTGGCAAGAGGGATGGCAAATTTTGC 3011
Query 2865 AAAGTGTGAAACTCGAGAAATTATGCAAGGGCGTAGAAAAGGTCGTTCCCTTCTCTTGGA 2924
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 3012 GAAGTGTGAAACTCGAGAAATTATGCAAGGGCGTAGAAAAGGCCGTTCTCTTCTGTTGGA 3071
Query 2925 AGAGGGTGCTCTTGAATGGTTGACTTCAAACTCACATATTGATTCAGCATCAACACAACG 2984
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3072 AGAGGGTGTTCTTGAATGGTTGACTTCAAATTCACATATTGATTCAGCATCAACACAACG 3131
Query 2985 TCACATCGAGCTTGCACTTTGCCATTTAGCTCAAAATGAGGAAAATGCAAATGATTTCAG 3044
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3132 TCACATCGAACTTGCGCTTTGCCATTTAGCTCAAAATGAGGAAAATGCAAATGATTTCAA 3191
Query 3045 AAGAACAGGAAGCGTGACAGAGATTGTAAGAATATCTGTGGAGTCGAGTAGAGATGATAT 3104
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3192 AAGAACAGGAAGCGTGACAGAGATTGTAAGAATATCTGTGGAGTCAAGTAGAGATGATAT 3251
Query 3105 TCGCAGTTTAGCAAAGAAGATACTCAAAACAAACCCTTACTTCTCAAGCTGA 3156
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3252 TCGCAGTTTAGCAAAGAAGATACTCAAAACAAACCCTTACTTCTCAAGCTGA 3303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 156972364647
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5