BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324027
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54970.1 | Symbols: | D-aminoacid aminotransferase-like PLP... 1635 0.0
> AT3G54970.1 | Symbols: | D-aminoacid aminotransferase-like PLP-dependent
enzymes superfamily protein | chr3:20368168-20370098
REVERSE LENGTH=1251
Length=1251
Score = 1635 bits (885), Expect = 0.0
Identities = 1021/1083 (94%), Gaps = 24/1083 (2%)
Strand=Plus/Plus
Query 1 ATGTCGAATTGCAGATTTCTCTACCACAACGGTGTCGTTTTGGAGGCTCCTCCCGTCACC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 29 ATGTCGAATTGCAGATTTCTCTACCACAACGGTGTCGTTTTGGAGGCTCCTCCGGTCACT 88
Query 61 ACCTTCCTTGAATCGCTCACGGGTGCTTATACAACGACGAGAACGATAAACAATGGCACT 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 89 ACCTTCCTTGAATCGCACACGGGTGCTTATACAACGACGAGAACGATAAACAATGGTACT 148
Query 121 AGTTTCTTGTTCTGGGAGAGACATATGAAGAGACTTTCTAGCTCGATTCGTATCCTTTTG 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 149 AGTTTCTTGTTCTGGGAGAGACACATGAAGAGACTTTCTAGCTCGATTCGTATTCTTTTG 208
Query 181 AATTCAAAGCCTGAGCTTTTGTTCAGTTCTGGGTCATCACCGCGGGTTTGGATGAATCAA 240
|| ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 209 AAGTCAAATCCCGAGCTTTTGTTCAGTTCTGGGTCATCACCGCGGTTTTGGATGAATCAA 268
Query 241 CCAGTTCCTCATTCGAGTATATACGATCTAGTCAATGGTTCTATGAGCGAAGCCCTGAAG 300
||||||||| ||||||||| ||||||| ||||||||| ||||||||||| |||||||||
Sbjct 269 CCAGTTCCTGGTTCGAGTATTTACGATCGAGTCAATGGCTCTATGAGCGAGGCCCTGAAG 328
Query 301 TCTGTTGTTGTCAAGGAAAGTGATAGAATTTATGGAGAAGAATTAGCGGTAACTGTTCTT 360
||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||
Sbjct 329 TCTGTTGTTGTCAAGGAAAGTGAAAGACTCTATGGAGAAGAATTAGCAGTAACTGTTCTT 388
Query 361 GTTACTGGTAATGTGGGGAAATTGAATAGGTTAGATGATGGGAACAAATGTGATGAGGAG 420
|||||||||||||||| |||||||||||||||||||| ||||||| || | |
Sbjct 389 GTTACTGGTAATGTGGAGAAATTGAATAGGTTAGATGTTGGGAAC-AA--T--T------ 437
Query 421 AGAAAGGTTCTGGATTTTCTAGATGTGTGGTTGCATTTAGGTGCATACTCGCCTTT---C 477
| ||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 438 ------G----GGATTTTCTAGATGTGTGGTTGCATATAGGTGCATACTCGCCTTTAGGC 487
Query 478 CCGTTAGATGTTCGAGAAAATGCTGCGAGTTTGGCTTTGGTTGGTCCTGGACGAGATGTA 537
||||||| |||| |||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 488 CCGTTAGGTGTTGGAGAAAATGCCGCGAGTTTGGCTTTGGTTGGTCGTGGACGAGATGTA 547
Query 538 GCTGCTGCTAAATACTCAGACTGGGTTAGGCTTAGGAAGCCTCTGGAGAAGTTTAGATCT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 548 GCTGCTGCTAAATACTCAGACTGGGTTAGGCTTAGGAAGCCTCTGGAGAAGTTTAGACCT 607
Query 598 CCTTCGACCACTGAACTTCTTTTGTCAAACGATGGTGATCATTTGCTTGAGGGATGCATC 657
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 608 CCTTTGACCACTGAACTTCTTTTGTCAAACGATGGTGATCATTTGCTTGAGGGCTGCATC 667
Query 658 ACAAACTTTTTCGTAGTTTGCCGCAGGGTGAAGTCATCAGAGAATCTCTACGGCGGGAGT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 ACAAACTTTTTCGTAGTTTGCCGCAGGGTGAAGTCATCAGAGAATCTCTACGGCGGGAGT 727
Query 718 TTGAGCGAGTTTGAGGTGCAGACCGCACCTATAACTGATGGTGTGCTAGCAGGAGTTATA 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 728 TTGAGCGAGTTTGAGGTGCAGACCGCGCCTATAACTGATGGTGTGCTAGCAGGAGTTATA 787
Query 778 AGAGACCTTGTCATCGAAGTGTGTTTAAGCAAGGGGATTCCATACCGCGAGAGAGCACCT 837
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 788 AGAGACCTTGTCATCGAAGTGTGTTTAAGCGAGGGGATTCCATACCGCGAGAGAGCACCT 847
Query 838 TCGTGGTCTGAGCGTGAGCTTTGGGAAGAAGCCTTCATTACAAGTAGTCTGAGGATTTTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TCGTGGTCTGAGCGTGAGCTTTGGGAAGAAGCCTTCATTACAAGTAGTCTGAGGATTTTG 907
Query 898 CAGCATGTAGGGACGATCAAAATACCCGTTGGTTCATTGGAGGCATTGGCTTGTAACAAA 957
||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 908 CAGCATGTAGGGACGATCAAAGTACCCGTTGGTTCAATGGAGGGATTGGCTTGTAACAAA 967
Query 958 CCTGAGGAGATTCAATGGAAGGAGAAAAGGTTTAAGGAAAGACCTGGGATGATCACTGAA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 CCTGAGGAGATTCAATGGAAGGAGAAAAGGTTTAAGGAAAGACCTGGGATGATCACTGAA 1027
Query 1018 TTAATCCAGAAAGCGGTAATGGAGAGAGGTATTGAAGAAGGGTTCCCGTTGAAGGCCTTT 1077
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1028 TTAATCAAGAAAGCGATAATGGAGAGAGGTATTAAAGAAGGGTTCCCGTTGAAGGCCTTT 1087
Query 1078 TAG 1080
|||
Sbjct 1088 TAG 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5