BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324038
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55080.1 | Symbols: | SET domain-containing protein | chr3:... 2012 0.0
> AT3G55080.1 | Symbols: | SET domain-containing protein | chr3:20411399-20415897
REVERSE LENGTH=1536
Length=1536
Score = 2012 bits (1089), Expect = 0.0
Identities = 1316/1426 (92%), Gaps = 14/1426 (1%)
Strand=Plus/Plus
Query 1 ATGCTACTCTGCATTCCGACGGTGAAGCTGTTCGGGTTTCAGCAACGGCGCAATTTTAGC 60
|||||| |||||||| |||| |||||||| ||||||||||| ||| |||||||| |||||
Sbjct 68 ATGCTATTCTGCATTTCGACAGTGAAGCTTTTCGGGTTTCAACAAAGGCGCAATGTTAGC 127
Query 61 TCCTTAGCGAAGCGTTTCAGTCTCATCGGGAAATC-ACCTTTAGAGCCCCAAACTCAGGC 119
|| ||||| ||||||||||||||| ||||||| | | | ||||||| ||||||||||||
Sbjct 128 TCTTTAGCCAAGCGTTTCAGTCTCGCCGGGAAA-CTAACGTTAGAGCTCCAAACTCAGGC 186
Query 120 CTCTTTGGACAAGGACTTCTTACCCTGGTTAGAACGAATTGCTGGAGCAAAGATAACTAA 179
|| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 187 TTCGTTGGACAATAACTTCTTACCCTGGTTAGAGCGAATTGCTGGAGCAAAGATAACTAA 246
Query 180 CACGCTTTCGATTGGGAAATCCACATATGGCAGGTCACTGTTTGCCTCAAAATTTATCCA 239
|| |||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||| |
Sbjct 247 TACTCTTTCGATTGGGAAATCCACCTATGGCAGGTCACTGTTCGCCTCCAAAGTTATCTA 306
Query 240 TGCCGGAGAATGCATGTTGAAAGTCCCTTTTAATGCGCAAATAACTCGAGATGAGTTGCC 299
||| || || ||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 307 TGCTGGTGACTGCATGTTGAAAGTCCCTTTTAATGCGCAAATAACTCCAGATGAGCT-CC 365
Query 300 CC-CGGATATTAGAGTTTCATTGACCGATGAAGTTGGGAATATTGGAAAGCTTGCTGCTG 358
|| ||||||||||||||| ||||| | |||||||||||||||| |||| |||||||||||
Sbjct 366 CCTCGGATATTAGAGTTTTATTGAGCAATGAAGTTGGGAATATCGGAATGCTTGCTGCTG 425
Query 359 TTCTATTAAGAGAGAAGAAAACGGGTCAAAAGTCTCGATGGCTCCCTTATATCAGCCGAC 418
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 426 TTCTAATAAGAGAGAAGAAAATGGGTCAAAAGTCTCGATGGGTCCCTTATATCAGCCGAC 485
Query 419 TTCCTCAACCTGCAGAGATGCACAGCACAATATTTTGGGGTGAAGATGAGTTCAGCATGA 478
|||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||||
Sbjct 486 TTCCTCAACCTGCAGAGATGCATAGCTCGATATTTTGGGGTGAAGATGAGCTCAGCATGA 545
Query 479 TTCGTTGTAGTGCAGTTCACAAGGAAACAGTAAAACAAAAAGCTCAGATAGAAAAGGAAT 538
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 546 TTCGTTGTAGTGCAGTTCACCAGGAAACAGTAAAACAAAAAGCTCAGATAGAAAAGGACT 605
Query 539 TCTCATTTGTAGCACAGGCATTTAAACAACATTATACCATGGTGATTGAACGCCCATATT 598
| ||||||||||| |||||||| |||||||||| | |||| || | |||||||||| |||
Sbjct 606 TTTCATTTGTAGCGCAGGCATTCAAACAACATTGTCCCATAGTAACTGAACGCCCAGATT 665
Query 599 TGGAAGACTTCATGTATGCATATGCTTTAGTGGGATCTCGTGCGTGGGAAACCTCAAAAG 658
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 666 TGGAAGATTTCATGTATGCATATGCTTTAGTGGGATCTCGTGCGTGGGAAAACTCAAAAC 725
Query 659 GCATATCTCTGATTCCGTTTGCAGACTTCATGAACCATGATGGGCTTTCTGCATCAATCG 718
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GCATATCACTGATTCCGTTTGCAGACTTCATGAACCATGATGGGCTTTCTGCATCAATCG 785
Query 719 TTTTGAGCGATGAAGACAATCAACTATCAGAGGTCACAGCAGATCGTAACTACAGTCCCG 778
||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 786 TTTTGAGGGATGAAGACAATCAACTATCAGAGGTCACTGCAGATCGCAACTACAGTCCTG 845
Query 779 GTGATGAGGTGTTCATTAAGTATGGGGAATTCTCAAATGCTACACTCATGTTAGATTTTG 838
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GTGATGAGGTATTCATCAAGTATGGGGAATTCTCAAATGCTACACTCATGTTAGATTTTG 905
Query 839 GATTTACCCTTCCTTACAACATTCATGACGAGGTTCAAATCCAAATGGATGTACCGAATG 898
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GATTTACCTTTCCTTACAACATTCATGACGAGGTTCAAATCCAAATGGATGTACCGAATG 965
Query 899 ATGATCCTCTTCACGACATGAAGCTGGGACTTCTCCAGACACATCACACTCGAACTGTCA 958
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 ATGATCCTCTTCGCAACATGAAGCTGGGACTTCTCCAGACACATCACACTCGAACTGTCA 1025
Query 959 AAGATATCAATATATTTCACTCGTCTTGTGATACTTTCACGATCAAGGAAGTGAAATCTA 1018
||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1026 AAGATATCAATATCTTTCACTCTTCTTGTGATACTTTCACAATCAAGGAAGTGAAATCTG 1085
Query 1019 CT-TCAGGAAAAGGGAGAGGAATTCCACAATCTCTCCGTGCATTTGCTCGTGTTCTCTGT 1077
|| | ||| ||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1086 CTAT-AGGGAAAGGAAAAGGCATTCCACAATCTCTCCGTGCATTTGCTCGTGTTCTCTGT 1144
Query 1078 TGTACCATTCCTCAAGAGCTGAATGATTTGTCAAAAGAAGCTGCACAAAATGATGGCCGA 1137
|||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1145 TGTATCATTCCCCAAGAGCTAAATGATTTGTCAAAAGAAGCTGCACAAAATGATGGCCGA 1204
Query 1138 CTAGCTCGGCTTCCTTTTAAAGACAGGAGTAGAGAGTTGGAGGCACATAAGATCCTTTTG 1197
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||
Sbjct 1205 CTAGCTCGGCTTCCTTTTAAAGACGGGAACAGAGAGTTGGAGGCACATAAGATCCTCTTG 1264
Query 1198 TCTCATATCAACAGATTAATTGAGGATCATAGTGCTTGCATCAAGGAACTGGAAGAATCT 1257
||||| ||||||||||| |||||||||||||||| ||||||||||||| |||||||||
Sbjct 1265 TCTCACATCAACAGATTGATTGAGGATCATAGTGTTTGCATCAAGGAAATGGAAGAAT-- 1322
Query 1258 AAATGCTATTTTGTATCACAAAGATTTGCTGTTAGAAGGAAGATGGCAAGAGATCTCCTA 1317
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1323 ----GCTATTTTGTATCACAAAGATTTGCTGTTAGAAGGCAGATGGCAAGAGATCTCCTA 1378
Query 1318 TCCGGTGAGCTTCGTGTTCTGAGATCTGCAGCTGAATGGCTCAATCATTATTGCACAACC 1377
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TACGGTGAGCTTCGTGTACTGAGATCTGCAGCTGAATGGCTCAATCATTATTGCACAACC 1438
Query 1378 TTGTTTTCAGTGACT-TCGAAACCGGTTTTACAGTCTCTACAATAG 1422
||| |||||| ||| | | || || ||||||||||||||| ||||
Sbjct 1439 TTGCTTTCAGAGACAAT-GTAATCGATTTTACAGTCTCTACGATAG 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5