BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324076
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55530.1 | Symbols: SDIR1 | RING/U-box superfamily protein |... 1332 0.0
> AT3G55530.1 | Symbols: SDIR1 | RING/U-box superfamily protein
| chr3:20595126-20597603 REVERSE LENGTH=1164
Length=1164
Score = 1332 bits (721), Expect = 0.0
Identities = 789/822 (96%), Gaps = 3/822 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTTTGTTTTCCGGGGAGGTAGAGGAGATTTAGAAAGCGGATTCTC--G-GGTTTT 57
||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 169 ATGAGCTTTGTTTTCCGGGGAAGTAGAGGAGATTTAGAAAGCGGATTCTCGGGTGGTTTT 228
Query 58 ATACCCGAAAGACGAGCTATGCGTGTTCATGGAGCTCGACCAGTTAATTCTAATTCCCTC 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 CTACCCGAAAGACGAGCTATGCGTGTTCATGGAGCTCGACCAGTTAATTCTAATTCCCTC 288
Query 118 GCTTTTCTGGTTACAGTTCTTTTGCTGTTTATGATTCTCAATTCACATCAGATGCCTCCT 177
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 289 GCTTTTCTGGTTACAGTTCTTTTGCTGTTTATGATTCTCAATTCGCATCAGATGCCTCCT 348
Query 178 AATTTCCTGCTGTGGCTTGTGCTTGGGGTGTTTTTGATGGCAACGACACTTAGGATGTAT 237
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 349 AATTTCCTGCTGTGGCTTGTGCTTGGGGTGTTTTTGATGGCAACGACGCTTAGGATGTAT 408
Query 238 GCGACTTGCCAACAACTTCAAGCTCAGGCTCAGGCTCATGCTGCAGCAGCAAGTGGCCTC 297
|| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 409 GCTACTTGCCAACAACTTCAAGCTCATGCTCAGGCTCAGGCTGCAGCAGCAAGTGGCCTC 468
Query 298 TTCAGCCATACTGAGCTGAGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGG 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TTTAGCCATACTGAGCTGAGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGG 528
Query 358 CGTCTTCAAGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAGTTTGATGACTTAGAT 417
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 529 CGTCTTCAGGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAATTTGATGACTTAGAT 588
Query 418 TATGAAACTCTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTATGAGCGAGGAG 477
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TATGAAACTTTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTATGAGCGAGGAA 648
Query 478 GAGATAAACGCACTTCCAGTACACAAGTACAAGGTGTTAGATCCTGAAAATGGTTGCGCT 537
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 649 GAGATAAATGCACTTCCAGTTCACAAGTACAAGGTGTTGGATCCTGAAAATGGTTGCTCT 708
Query 538 TTGGCAAAGCAAGCATCAACCTCATCCTCAGCTGAGAAGAAGCAAGATTCTGTCAATGAA 597
|||||||||||||| ||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 709 TTGGCAAAGCAAGCGTCAACCTCATCCTCAGCTGAGAAGATGCTAGATTCTGCCAATGAA 768
Query 598 AGTACAAAAGGAACAGAAGATGAGCTTACTTGTAGTGTTTGCCTAGAACAAGTTACCGTA 657
|||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 769 AGTAAAAAAGGAACAGAAGATGAGCTCACATGTAGTGTTTGCCTAGAACAAGTTACCGTA 828
Query 658 GGGGAAGTTGTTCGCACCTTACCTTGCTTGCATCAGTTTCATGCAGGATGTATTGATCCA 717
|||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 829 GGGGAAATCGTTCGCACCTTACCTTGTTTGCATCAGTTTCATGCAGGATGTATCGATCCA 888
Query 718 TGGTTGAGACAGCAAGGAACATGTCCTGTCTGTAAATTCAGAGCTCATTCAGGATGGCAA 777
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 889 TGGTTGAGACAGCAAGGAACATGTCCTGTCTGTAAATTTAGAGCTCATTCAGGATGGCAA 948
Query 778 GAACAAGATGAGATCGATGATGATGCTTCCGACATGGTTTGA 819
|||||||||||||| |||||||||||||||||||||||||||
Sbjct 949 GAACAAGATGAGATTGATGATGATGCTTCCGACATGGTTTGA 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5