BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg324076 Length=819 Score E Sequences producing significant alignments: (Bits) Value AT3G55530.1 | Symbols: SDIR1 | RING/U-box superfamily protein |... 1332 0.0 > AT3G55530.1 | Symbols: SDIR1 | RING/U-box superfamily protein | chr3:20595126-20597603 REVERSE LENGTH=1164 Length=1164 Score = 1332 bits (721), Expect = 0.0 Identities = 789/822 (96%), Gaps = 3/822 (0%) Strand=Plus/Plus Query 1 ATGAGTTTTGTTTTCCGGGGAGGTAGAGGAGATTTAGAAAGCGGATTCTC--G-GGTTTT 57 ||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||||| Sbjct 169 ATGAGCTTTGTTTTCCGGGGAAGTAGAGGAGATTTAGAAAGCGGATTCTCGGGTGGTTTT 228 Query 58 ATACCCGAAAGACGAGCTATGCGTGTTCATGGAGCTCGACCAGTTAATTCTAATTCCCTC 117 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 229 CTACCCGAAAGACGAGCTATGCGTGTTCATGGAGCTCGACCAGTTAATTCTAATTCCCTC 288 Query 118 GCTTTTCTGGTTACAGTTCTTTTGCTGTTTATGATTCTCAATTCACATCAGATGCCTCCT 177 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 289 GCTTTTCTGGTTACAGTTCTTTTGCTGTTTATGATTCTCAATTCGCATCAGATGCCTCCT 348 Query 178 AATTTCCTGCTGTGGCTTGTGCTTGGGGTGTTTTTGATGGCAACGACACTTAGGATGTAT 237 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 349 AATTTCCTGCTGTGGCTTGTGCTTGGGGTGTTTTTGATGGCAACGACGCTTAGGATGTAT 408 Query 238 GCGACTTGCCAACAACTTCAAGCTCAGGCTCAGGCTCATGCTGCAGCAGCAAGTGGCCTC 297 || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 409 GCTACTTGCCAACAACTTCAAGCTCATGCTCAGGCTCAGGCTGCAGCAGCAAGTGGCCTC 468 Query 298 TTCAGCCATACTGAGCTGAGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGG 357 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 TTTAGCCATACTGAGCTGAGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGG 528 Query 358 CGTCTTCAAGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAGTTTGATGACTTAGAT 417 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 529 CGTCTTCAGGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAATTTGATGACTTAGAT 588 Query 418 TATGAAACTCTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTATGAGCGAGGAG 477 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 589 TATGAAACTTTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTATGAGCGAGGAA 648 Query 478 GAGATAAACGCACTTCCAGTACACAAGTACAAGGTGTTAGATCCTGAAAATGGTTGCGCT 537 |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| || Sbjct 649 GAGATAAATGCACTTCCAGTTCACAAGTACAAGGTGTTGGATCCTGAAAATGGTTGCTCT 708 Query 538 TTGGCAAAGCAAGCATCAACCTCATCCTCAGCTGAGAAGAAGCAAGATTCTGTCAATGAA 597 |||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||||| Sbjct 709 TTGGCAAAGCAAGCGTCAACCTCATCCTCAGCTGAGAAGATGCTAGATTCTGCCAATGAA 768 Query 598 AGTACAAAAGGAACAGAAGATGAGCTTACTTGTAGTGTTTGCCTAGAACAAGTTACCGTA 657 |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 769 AGTAAAAAAGGAACAGAAGATGAGCTCACATGTAGTGTTTGCCTAGAACAAGTTACCGTA 828 Query 658 GGGGAAGTTGTTCGCACCTTACCTTGCTTGCATCAGTTTCATGCAGGATGTATTGATCCA 717 |||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 829 GGGGAAATCGTTCGCACCTTACCTTGTTTGCATCAGTTTCATGCAGGATGTATCGATCCA 888 Query 718 TGGTTGAGACAGCAAGGAACATGTCCTGTCTGTAAATTCAGAGCTCATTCAGGATGGCAA 777 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 889 TGGTTGAGACAGCAAGGAACATGTCCTGTCTGTAAATTTAGAGCTCATTCAGGATGGCAA 948 Query 778 GAACAAGATGAGATCGATGATGATGCTTCCGACATGGTTTGA 819 |||||||||||||| ||||||||||||||||||||||||||| Sbjct 949 GAACAAGATGAGATTGATGATGATGCTTCCGACATGGTTTGA 990 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39885912718 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5