BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324082
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55605.1 | Symbols: | Mitochondrial glycoprotein family pro... 1253 0.0
AT3G55600.1 | Symbols: | Membrane fusion protein Use1 | chr3:2... 893 0.0
AT1G54110.1 | Symbols: | Membrane fusion protein Use1 | chr1:2... 573 2e-162
> AT3G55605.1 | Symbols: | Mitochondrial glycoprotein family protein
| chr3:20622620-20624002 FORWARD LENGTH=938
Length=938
Score = 1253 bits (678), Expect = 0.0
Identities = 725/748 (97%), Gaps = 2/748 (0%)
Strand=Plus/Plus
Query 676 GCTTCTACTTTAGCTTCCGTGTGTGGTCGTGTGGCTCGAGCTCAGGCGGTCTCCGTC-AT 734
|||||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||
Sbjct 79 GCTTCTACTTTAGCTTCCGTGTGTGGTCGTGTGGCTCGAGCTCAAGCCGTCTCCG-CTAT 137
Query 735 CGTTAATCGCTCGTCTCTTGTTCCCAAGCCATCTCTGCTTCGTCCTTTCGTCTCTCGCGG 794
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 138 CGTTAATCGCTCGTCTCTTGTTCCCAAGCCATCTCTGCTTCGGCCCTTCGTCTCTCGTGG 197
Query 795 CTTTCCTTACTCGACGGCCACTGAGCCGTTAAAGTCCGATCAGACGCTTCTACAAGTGAT 854
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 198 CTTTCCTTATTCGACGGCCACTGAGCCGTTAAAGTCCGATCAGACGCTTATACAAGTGAT 257
Query 855 TGACTCTGAGATCAACGATTCTTTCGAAGCCGATGATCGCGATGCGGATGAAGAGACCAT 914
||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 258 TGACTCTGAGATCAAGGATTCTTTCGAAGCAGATGATCACGATGCGGATGAAGAGACGAT 317
Query 915 AGACTCTAGTGACTTTCCTTTCAAAATCGAAGATAATCCTGGACACAGGACTGTGAAATT 974
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 318 AGACTCTAGTGACTTTCCTTTCAAAATCGAAGATAATCCTGGACACAGGACTGTGACATT 377
Query 975 GACTAGAGAATACAATGGGGAACAGATTAAAGTAGAAGTAAGCATGCCTGGTCTTGCCAT 1034
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 378 GACTAGAGAATACAATGGAGAGCAGATTAAAGTAGAAGTAAGCATGCCTGGTCTTGCCAT 437
Query 1035 GGATGAAAATGAAGATGATGTGGATGACGATGAAGATGGTGATGGTCGTCATGAGAAAGC 1094
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 438 GGATGAAAATGAAGATGATGTGGATGACGATGAAGATGGTGATGGTCGTCATGAGAAATC 497
Query 1095 GAATGAATCAAGCATTCCACTTGTTGTCTCTGTGACCAAGAAGAGTGGACTCAGCCTAGA 1154
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 498 GAATGAATCAAGCATTCCACTTGTTGTCACTGTGACCAAGAAGAGTGGACTTAGCCTAGA 557
Query 1155 GTTTAGCTGCACTGCTTTCCCTGATGAGATTGTCATTGATGGTTTGTCTGTGAACCGTCC 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GTTTAGCTGCACTGCTTTCCCTGATGAGATTGTCATTGATGGTTTGTCTGTGAACCGTCC 617
Query 1215 AGAGGATTCTTCTCAAGAACAGTTGACTTATGATGGGCCAGATTTTCAGGAGTTGGATGA 1274
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AGATGATTCTTCTGAAGAACAGTTGACTTATGATGGGCCAGATTTTCAGGAGTTGGATGA 677
Query 1275 GAATATGCGCAAGTCGTTCCACAAGTTTCTAGAGACGAGAGGAATCAAAGCAAGCGCAAC 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 GAATATGCGCAAGTCGTTCCACAAGTTTCTAGAGACGAGAGGAATCAAAGCAAGCGCAAC 737
Query 1335 GGATTTCTTGTATGAGTATATGATGAAGAAAGATAGCAGAGAGTATTTACTATGGTTGAA 1394
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 738 GGATTTCTTGTATGAGTACATGATGAAGAAAGATAGCAGAGAGTACTTACTATGGTTGAA 797
Query 1395 GAAGCTCAAAACCTTTGTCCAAGAATGA 1422
||||||||||||||||||||||||||||
Sbjct 798 GAAGCTCAAAACCTTTGTCCAAGAATGA 825
> AT3G55600.1 | Symbols: | Membrane fusion protein Use1 | chr3:20620443-20622470
FORWARD LENGTH=975
Length=975
Score = 893 bits (483), Expect = 0.0
Identities = 524/544 (96%), Gaps = 2/544 (0%)
Strand=Plus/Plus
Query 1 ATGGGAATAAGCAAAACAGAGATCAATTTGCGGAGATTGCTTGCCGCTGCACCTAACCAG 60
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 127 ATGGGAATAAGCAAAACGGAGATCAATTTGCGGAGATTGCTTTCCGCTGCACCTAACCAG 186
Query 61 CAAAATCAGTCAAAGCTTATGCATTATGTTGCTACATTGAGGGAACAATTAGAACAACTC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CAAAATCAGTCGAAGCTTATGCATTATGTTGCTACATTGAGGGAACAATTAGAACAACTC 246
Query 121 TCGGAAGAGAAGACCCCTCAAGGCCTTCCCAGAGTTACAAAGGCCAA-GTATAATGAGTA 179
|| ||||| || |||||| ||||||||||||||||||||||||| || || |||||||||
Sbjct 247 TCCGAAGAAAAAACCCCTGAAGGCCTTCCCAGAGTTACAAAGGCTAAGGT-TAATGAGTA 305
Query 180 CTATGAGAAGATTGAAGCTGTTGCTTCGAAGATCGCTTCTCAAGAGCCTGACACAGAGAT 239
||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| |
Sbjct 306 CTATGAGAAGATTGAAGCTGTTGCTTCCAAGATAGCTTCTCAAGAGCCTGAGACAGAGGT 365
Query 240 ATCTGATGAACCCTTTGCAAAAGATTCGACTAGTGGAAGCTCACCAAAAATAGAAGATGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 ATCTGATGAACCCTTTGCAAAAGATTCGACTAGTGGAAGCTCACCAAAAATAGAAGATGA 425
Query 300 GCCTCGAAGCCCCACTTCTCCACAGCTGAGAAGAAGAATCGTCCCTGCAAGTTCCAAGGA 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GCCTCGAAGCCCCACTTCGCCACAGCTGAGAAGAAGAATCGTCCCTGCAAGTTCCAAGGA 485
Query 360 GCAAAGCTTTGATGCTGCTGATGCTGATTCATCAAAACCAATAAAACTAGACACCACAGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 486 GCAAAGCTTTGATGCTGCTGATGCTGATTCATCAAAACCAATAAAACTAGACACCGCAGC 545
Query 420 TCAAGCGCACATTGACAAGCACAGAAAGCTTCAAGAGGATCTAACCGATGAAATGGTGGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 TCAAGCGCACATTGACAAGCACAGAAAGCTTCAAGAGGATCTAACCGATGAAATGGTGGT 605
Query 480 ACTTGCAAGACAACTCAAGGAGAGAAGTCAAGCGATAAGCCAATCCGTGCAAAATACTGA 539
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 606 ACTTGCAAGACAACTCAAGGAGAGAAGTCAAGCGATTAGTCAATCTGTGCAAAATACAGA 665
Query 540 AAAG 543
||||
Sbjct 666 AAAG 669
Score = 209 bits (113), Expect = 5e-53
Identities = 130/138 (94%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 540 AAAGCTTAGCGAGCACAGGACATGCAACAACAAGAGCGACGAAGATATATTCACAAAGCT 599
||||| |||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 701 AAAGCCTAGCGAGCACAGGACACGCGACAACAAGAGCGACAAAGATATATTCACAAAGCT 760
Query 600 CAAAGACAAGTTGCTTCCAGTGGCTATTGATCTTTGCCATGATCTGTGTGTTCATAATGG 659
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 761 CAAAGACAAGTTGCTTCCAGTGGCTCTTGATCTTCGCCATGATCTGTGTGTTCATAATGG 820
Query 660 TTGT-CTTGTTGATCCGG 676
|||| || ||||||||||
Sbjct 821 TTGTTCT-GTTGATCCGG 837
> AT1G54110.1 | Symbols: | Membrane fusion protein Use1 | chr1:20199418-20201729
FORWARD LENGTH=867
Length=867
Score = 573 bits (310), Expect = 2e-162
Identities = 473/549 (86%), Gaps = 21/549 (4%)
Strand=Plus/Plus
Query 1 ATGGGAATAAGCAAAACAGAGATCAATTTGC-GGAGATTGCTTGCCGCTGCACCTAACCA 59
|||||||| ||||||| || |||||||| | |||||| ||| | ||||||||||| ||
Sbjct 51 ATGGGAATCGGCAAAACGGAAATCAATTT-CATGAGATTACTTTCAGCTGCACCTAATCA 109
Query 60 GCAAAATCAGTCAAAGCTTATGCATTATGTTGCTACATTGAGGGAACAATTAGAACAACT 119
|||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 110 GCAAAACCAGTCTAAGCTTATGCATTATGTTGCTACTTTGAGGGAACAGTTGGAACAACT 169
Query 120 CTCGGAAGAGAAGACCCCTCAAGGCCTTCCCAGAGTTACAAAGGCCAA-GTATAATGAGT 178
||||||||||||||||| | |||| ||||||||||||||||| || || || |||||||
Sbjct 170 CTCGGAAGAGAAGACCCTTGAAGGGCTTCCCAGAGTTACAAACGCTAAGGT-GAATGAGT 228
Query 179 ACTATGAGAAGATTGAAGCTGTTGCTTCGAAG-ATCGCTT-CTCAAGAGCCTGACACAGA 236
|||||||||||||||||||||||| ||| | | || | || |||||| |||| |||||||
Sbjct 229 ACTATGAGAAGATTGAAGCTGTTGTTTC-ACGAATAG-TTGCTCAAGTGCCTCACACAGA 286
Query 237 GATATCTGATGAACCCTTTGCAAAAGATTCGACTAGTGGA-AGCTCACCAAAAATAGAAG 295
| ||||||||||| | |||||||| ||||| |||| || || || || ||| ||||||
Sbjct 287 GGTATCTGATGAAGCTTTTGCAAAGGATTCTACTA-ACGATAGTTCTCCCAAAGTAGAAG 345
Query 296 ATGAGCCTCGAAGCCCCACTTCTCCACAGCTGAGAAGAAGAATCGTCCCTGCAAGTTCCA 355
| || | |||| ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 346 ACGATACACGAACCCCCAATTCTCCACAGCTGAGAAGAAGAATCGTGCCTGCAAGTTCCA 405
Query 356 AGGAGCAAAGCTTTGATGCTGCTGATGCTGATTCATCAAAACCAATAAAACTAGACACCA 415
| |||||||||| ||| | |||||| | | ||||||||||||||||||||||||
Sbjct 406 AAGAGCAAAGCTATGA--C-GCTGATCC-----C-TCAAAACCAATAAAACTAGACACCG 456
Query 416 CAGCTCAAGCGCACA-TTGACAAGCACAGAAAGCTTCAAGAGGATCTAACCGATGAAATG 474
||||||||||||| | || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 457 CAGCTCAAGCGCA-AGTTAACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATG 515
Query 475 GTGGTACTTGCAAGACAACTCAAGGAGAGAAGTCAAGCGATAAGCCAATCCGTGCAAAAT 534
||||||||||| |||||||| ||||||||||||||| |||||||||||| |||||||||
Sbjct 516 GTGGTACTTGCGAGACAACTTAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAAT 575
Query 535 ACTGAAAAG 543
|| ||||||
Sbjct 576 ACAGAAAAG 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5