BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324085
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55860.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 233 8e-61
> AT3G55860.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G60660.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr3:20727591-20729618 REVERSE LENGTH=1366
Length=1366
Score = 233 bits (126), Expect = 8e-61
Identities = 166/185 (90%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 223 ATGACCATATCTGAGATTGAGACTCTACAAAGACCAATTTC-GCTTCTTACTGAGGTTTA 281
|||||| ||||||||||||||||||||||| || |||||| ||| || ||||| ||||
Sbjct 930 ATGACCGTATCTGAGATTGAGACTCTACAACGAATAATTTCTCCTT-TTGCTGAGTTTTA 988
Query 282 CACGAACATGGCAATGAG-GTTGCATCCAGAGTTGTTTTCAGAAGATACAAATCCAAGGC 340
|||||||||||||| | | |||||||||||||||||||||||| ||| ||||| || |||
Sbjct 989 CACGAACATGGCAA-GGGAGTTGCATCCAGAGTTGTTTTCAGATGATTCAAATACATGGC 1047
Query 341 GGTGGTTGTTGTCCCAAGCCCAACCGAGGAAATGCAACAGAATAACCAAATTCAAAATGA 400
||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 1048 GGTGGTTGTTGTCCCAAGCCCAACCGAGGAAATACAACAGAACAACCAACTTCAAAATGA 1107
Query 401 ACCGG 405
|||||
Sbjct 1108 ACCGG 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19302815616
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5