BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg324090

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G55680.1 | Symbols:  | Plant invertase/pectin methylesterase...   837    0.0  


> AT3G55680.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr3:20665685-20666315 REVERSE 
LENGTH=552
Length=552

 Score =  837 bits (453),  Expect = 0.0
 Identities = 519/552 (94%), Gaps = 0/552 (0%)
 Strand=Plus/Plus

Query  1    ATGGCCACAATGCTCATCAAACACTTAACTTTTTCTTTGTCGTTGTTAGTATTCGTGTTC  60
            |||||| |||||||||||||||||||||||||  ||| ||||||||||||||||||||||
Sbjct  1    ATGGCCTCAATGCTCATCAAACACTTAACTTTGCCTTCGTCGTTGTTAGTATTCGTGTTC  60

Query  61   TTTGCGTTTACAGTCGTAGATGCGATGCCTATCAAAGACATGTACGCATTTTGCAAGGAT  120
            |||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||
Sbjct  61   TTTGCGTTTACAGTCGCAGATGCGATGTCTATCAAGGACATGTACGCATTTTGCAAGGAT  120

Query  121  ACGGATGACGTGAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGCCGCA  180
            || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACAGATGACGTCAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGCCGCA  180

Query  181  CGCGACCTCCATGATGTGCTTGTAATTGCAATTTCTCAATGCCAAATCCAATTGACCAAC  240
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  181  CGCGACCTCCATGATGTGCTTGTTATTGCAATTTCTCAATGCCAAATCCAATTGACCAAG  240

Query  241  GCAACCAAACAAATCAACAAAGTTCGTCAAAAGTTTAGTGGTCCGATTGGGACTCGACGA  300
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  241  GCAACCAAACAAATCAACAAAGTTCGCCAAAAGTTTAGTGGTCCGATTGGGACTCGACGA  300

Query  301  CTCTATTTTTGCGGAAAGTACTACAAACTAGCGTGTGCTTTGTTCCAAAAAGCTTATGAA  360
            |||||||||||||||||| |||||    |||||| |||||| |||||||| |||||||||
Sbjct  301  CTCTATTTTTGCGGAAAGCACTACTGTTTAGCGTCTGCTTTCTTCCAAAAGGCTTATGAA  360

Query  361  GAAGCACAAGAAGAAGGGCTCGAATCCATAGCTCTGTTTTCTGCAGTGGATGGTTCACAC  420
            ||||||||||||||||||||||| |||||||||| | |||||||||||||||| ||||||
Sbjct  361  GAAGCACAAGAAGAAGGGCTCGAGTCCATAGCTCAGCTTTCTGCAGTGGATGGCTCACAC  420

Query  421  TATATGATCAAATGCGAAGATGAATGGAAAAATAATGGACCGATACAAAAGTCTCCTTTC  480
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TATATGTTCAAATGCGAAGATGAATGGAAAAATAATGGACCGATACAAAAGTCTCCTTTC  480

Query  481  ACTTTCTATAACACAAATGTTGTCAAATTATTATCTATTATTCACGTTATTATCGAAAAG  540
            ||||||||| | |||||||||||| |||| ||||| || ||||| |||||||||||||||
Sbjct  481  ACTTTCTATTATACAAATGTTGTCGAATTGTTATCAATCATTCAGGTTATTATCGAAAAG  540

Query  541  TTGTATGGCTAG  552
             |||||||||||
Sbjct  541  ATGTATGGCTAG  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5