BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg324090 Length=552 Score E Sequences producing significant alignments: (Bits) Value AT3G55680.1 | Symbols: | Plant invertase/pectin methylesterase... 837 0.0 > AT3G55680.1 | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr3:20665685-20666315 REVERSE LENGTH=552 Length=552 Score = 837 bits (453), Expect = 0.0 Identities = 519/552 (94%), Gaps = 0/552 (0%) Strand=Plus/Plus Query 1 ATGGCCACAATGCTCATCAAACACTTAACTTTTTCTTTGTCGTTGTTAGTATTCGTGTTC 60 |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 1 ATGGCCTCAATGCTCATCAAACACTTAACTTTGCCTTCGTCGTTGTTAGTATTCGTGTTC 60 Query 61 TTTGCGTTTACAGTCGTAGATGCGATGCCTATCAAAGACATGTACGCATTTTGCAAGGAT 120 |||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| Sbjct 61 TTTGCGTTTACAGTCGCAGATGCGATGTCTATCAAGGACATGTACGCATTTTGCAAGGAT 120 Query 121 ACGGATGACGTGAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGCCGCA 180 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACAGATGACGTCAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGCCGCA 180 Query 181 CGCGACCTCCATGATGTGCTTGTAATTGCAATTTCTCAATGCCAAATCCAATTGACCAAC 240 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 181 CGCGACCTCCATGATGTGCTTGTTATTGCAATTTCTCAATGCCAAATCCAATTGACCAAG 240 Query 241 GCAACCAAACAAATCAACAAAGTTCGTCAAAAGTTTAGTGGTCCGATTGGGACTCGACGA 300 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 241 GCAACCAAACAAATCAACAAAGTTCGCCAAAAGTTTAGTGGTCCGATTGGGACTCGACGA 300 Query 301 CTCTATTTTTGCGGAAAGTACTACAAACTAGCGTGTGCTTTGTTCCAAAAAGCTTATGAA 360 |||||||||||||||||| ||||| |||||| |||||| |||||||| ||||||||| Sbjct 301 CTCTATTTTTGCGGAAAGCACTACTGTTTAGCGTCTGCTTTCTTCCAAAAGGCTTATGAA 360 Query 361 GAAGCACAAGAAGAAGGGCTCGAATCCATAGCTCTGTTTTCTGCAGTGGATGGTTCACAC 420 ||||||||||||||||||||||| |||||||||| | |||||||||||||||| |||||| Sbjct 361 GAAGCACAAGAAGAAGGGCTCGAGTCCATAGCTCAGCTTTCTGCAGTGGATGGCTCACAC 420 Query 421 TATATGATCAAATGCGAAGATGAATGGAAAAATAATGGACCGATACAAAAGTCTCCTTTC 480 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TATATGTTCAAATGCGAAGATGAATGGAAAAATAATGGACCGATACAAAAGTCTCCTTTC 480 Query 481 ACTTTCTATAACACAAATGTTGTCAAATTATTATCTATTATTCACGTTATTATCGAAAAG 540 ||||||||| | |||||||||||| |||| ||||| || ||||| ||||||||||||||| Sbjct 481 ACTTTCTATTATACAAATGTTGTCGAATTGTTATCAATCATTCAGGTTATTATCGAAAAG 540 Query 541 TTGTATGGCTAG 552 ||||||||||| Sbjct 541 ATGTATGGCTAG 552 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26473395469 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5