BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324130
Length=2184
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56100.1 | Symbols: MRLK, IMK3 | meristematic receptor-like ... 3258 0.0
> AT3G56100.1 | Symbols: MRLK, IMK3 | meristematic receptor-like
kinase | chr3:20816931-20819517 REVERSE LENGTH=2303
Length=2303
Score = 3258 bits (1764), Expect = 0.0
Identities = 2053/2189 (94%), Gaps = 34/2189 (2%)
Strand=Plus/Plus
Query 1 ATGGAGTTTATTACCCAAAACCAAGCTATTACTTCTCTGAGAATGATCAAC-CCCACTAT 59
||||||||||| ||||||||||||||||||||||||||||| ||||||||| || || ||
Sbjct 1 ATGGAGTTTATCACCCAAAACCAAGCTATTACTTCTCTGAGTATGATCAACACCGAC-AT 59
Query 60 TGATCAACCTAGGGCTTCACTTCGAAGCCGATTTCTCCTTCACCTAATCATCGTAAGCCT 119
||||||||||| |||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 60 TGATCAACCTAAGGCTTCACTTCGAAGCCGATTTCTCCTTCATCTAATCA---TATGCCT 116
Query 120 CCTCTTCTTCGTCCCTCCCTGCTCCAGCCAAACCTGGGACGGTGTAGTGATCACACAAGC 179
|||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||
Sbjct 117 CCTCTTCTTCGTCCCTCCCTGCTCAAGCCAAGCCTGGGATGGTGTAGTGATAACACAAGC 176
Query 180 TGATTACCAAGGTCTTCAAGCAGTTAAACAAGAACTGATTGATCCAAAAGGCTTCTTGAG 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 177 TGATTACCAAGGTCTTCAAGCAGTTAAACAAGAACTGATTGATCCAAGAGGCTTCTTGAG 236
Query 240 AAGCTGGAACGGTTCTGGATTGAGTGCTTGCTCTGGAGGCTGGTCCGGAATCAAATGTGC 299
||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||||||||
Sbjct 237 AAGCTGGAACGGTTCTGGATTCAGTGCTTGCTCTGGAGGCTGGGCTGGAATAAAATGTGC 296
Query 300 TCAAGGTCAAGTCATTGTGATTCAACTCCCATGGAAGAGTCTTGGAGGTAGAATCTCGGA 359
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 297 TCAAGGTCAAGTCATCGTCATTCAACTTCCATGGAAGAGTCTTGGAGGTAGAATCTCTGA 356
Query 360 GAAAATCGGACAGCTTCAAGCTCTTCGTAAGCTTAGTCTTCATGACAACAACCTTGGAGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GAAAATCGGACAGCTTCAAGCTCTTCGTAAGCTTAGTCTTCATGACAACAACCTTGGAGG 416
Query 420 TTCGATTCCAATGTCATTGGGACTCATTCCTAATCTTAGAGGAGTCCAGCTTTTCAACAA 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 417 TTCGATTCCAATGTCATTGGGACTCATTCCTAATCTTAGAGGAGTTCAGCTTTTCAACAA 476
Query 480 CCGACTCACTGGCTCGATCCCTGCTTCTCTCGGCGTTTCACGTTTCCTTCAAACGCTTGA 539
||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 477 CCGTCTCACTGGCTCAATCCCTGCTTCTCTCGGTGTATCACATTTCCTTCAAACGCTTGA 536
Query 540 TCTTAGCAATAACTTGCTCTCTGAGATTATTCCACCGAATCTTGCTGCCTCTTCTAGGCT 599
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 537 TCTCAGCAATAACTTGCTCTCTGAGATTATTCCACCGAATCTTGCTGACTCTTCTAAGCT 596
Query 600 TCTTAGGCTTAATCTCAGCTTTAATTCACTCTCTGGTCAAATCCCAGTGAGTCTTTCCCG 659
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 597 TCTTAGGCTTAATCTCAGCTTTAATTCACTGTCTGGTCAAATCCCAGTGAGTCTCTCTCG 656
Query 660 TTCTTCTTCTCTTCAGTTTCTTGCTCTTGACCATAACAACCTCTCTGGTCCTATCTTAGA 719
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 GTCTTCTTCCCTTCAGTTTCTTGCTCTTGACCATAACAACCTCTCTGGTCCAATCTTAGA 716
Query 720 CACTTGGGGTAGTAAGATCCGTGGAACCCTACCCTCTGAGCTAAGCAAACTCACTAAGCT 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TACTTGGGGTAGTAAGATCCGTGGAACCCTACCCTCTGAGCTAAGCAAACTCACTAAGCT 776
Query 780 TAGAACATTGGATATTAGCAGTAACAGTGTTAGTGGCCATATCCCTGAAACTCTAGGGAA 839
||||| | |||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 777 TAGAAAAATGGATATTAGTGGTAACAGTGTTAGTGGCCATATCCCTGAAACCCTAGGGAA 836
Query 840 CATTTCTTCTCTTACACATTTGGATTTGTCTCAAAACAAGCTCACCGGAGAGATTCCTAT 899
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 837 CATTTCTTCTCTTATACATTTGGATTTGTCTCAAAACAAACTCACCGGAGAGATTCCTAT 896
Query 900 TTCGATTTCTGATCTGGATAGCCTTAGCTTCTTCAATGTCTCTTATAACAACTTATCTGG 959
|||||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 897 TTCGATTTCTGACCTGGAAAGCCTGAACTTCTTCAATGTCTCTTATAACAACTTATCTGG 956
Query 960 TCCTGTTCCTACTCTCTTGTCCCAAAAGTTCAATTCGTCCTCTTTTGTCGGAAACTTACT 1019
|||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |||
Sbjct 957 TCCTGTTCCTACTCTCTTGTCCCAAAAGTTCAATTCCTCTTCTTTTGTCGGGAACTCACT 1016
Query 1020 GCTTTGCGGGTACAGCGTTTCGACGCCGTGTCCTACTCTTCCCTCACCGTCTCCCGAAAA 1079
||||||||| |||||||||||||| || |||||||||||||| ||||||||||| |||||
Sbjct 1017 GCTTTGCGGATACAGCGTTTCGACACCATGTCCTACTCTTCCTTCACCGTCTCCTGAAAA 1076
Query 1080 AGAAAGGAAATCATCCCACAGGAATCTGAGTACCAAAGACATCATCCTCATTGCTTCTGG 1139
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1077 AGAAAGGAAACCATCCCACAGGAATCTGAGTACCAAAGACATCATCCTCATTGCGTCTGG 1136
Query 1140 AGCACTCCTCATAGTTATGCTTATCCTTGTTTGTGTGCTTTGTTGCTTGCTGAGAAAGAA 1199
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1137 AGCACTCCTCATAGTTATGCTTATCCTTGTTTGTGTTCTATGTTGCTTGCTGAGGAAGAA 1196
Query 1200 AGTCAATGAAACCAAATCCAAGGGTGGAGAGGCTGGACCTGGAGCTGCAGCCGCAAAGAC 1259
|| ||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1197 AGCCAATGAAACCAAAGCCAAGGGCGGAGAGGCTGGACCTGGAGCTGTAGCCGCAAAGAC 1256
Query 1260 CGAGAAAGGAGCGGAAGCTGAAGCTGGAGGCGAAACGGGAGGGAAGCTGGTTCATTTTGA 1319
|||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1257 TGAGAAAGGAGGGGAAGCTGAAGCTGGAGGTGAAACTGGAGGGAAGCTGGTTCATTTTGA 1316
Query 1320 TGGACCAATGGCGTTTACCGCAGATGATCTTTTGTGTGCAACAGCAGAGATTATGGGAAA 1379
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1317 TGGACCAATGGCGTTTACTGCAGATGATCTTTTGTGTGCAACAGCAGAGATAATGGGGAA 1376
Query 1380 AAGCACTTATGGAACAGTTTACAAAGCTACACTTGAAGATGGAAGTCAAGTTGCAGTGAA 1439
|||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1377 AAGCACTTATGGGACTGTGTACAAAGCTACACTTGAAGATGGAAGTCAAGTAGCAGTGAA 1436
Query 1440 GAGATTGAGAGAAAAGATCACCAAAAGCCAAAAAGAAGCTTATTACTTAGGCCCTAAAGG 1499
|||||||||||||| |||||||||||| |||||||| | | | | |
Sbjct 1437 GAGATTGAGAGAAA-GATCACCAAAAGTCAAAAAGA-G---A-------G-----A--G- 1476
Query 1500 AGAGAAGCTGGTCGTCTTCGATTACATGTCTAGAGGAAGTCTTGCCACATTCCTCCATGC 1559
| || || ||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1477 A-AG---CTTGTCGTCTTCGATTACATGTCTAGAGGAAGCCTTGCCACGTTTCTCCATGC 1532
Query 1560 AAGAGGACCAGATGTTCATATCAATTGGCCTACAAGGATGAGCTTAATAAAGGGAATGGC 1619
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 AAGAGGACCAGATGTACATATCAATTGGCCTACAAGGATGAGCTTAATAAAGGGAATGGC 1592
Query 1620 TCGTGGCTTGTTCTACCTTCACACACACGCAAATATCATCCACGGAAACTTAACATCAAG 1679
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 TCGAGGCTTGTTCTACCTTCACACACACGCAAATATCATCCACGGAAACTTAACATCAAG 1652
Query 1680 CAATGTACTTTTGGATGAGAACATCAAT-GCGAAGATCTCAGATTACGGACTTTCTAGGC 1738
|||||| ||||||||||||||||| || |||||||||||||||||||| || || ||||
Sbjct 1653 CAATGTGCTTTTGGATGAGAACAT-AACCGCGAAGATCTCAGATTACGGTCTCTCAAGGC 1711
Query 1739 TAATGACAGCAGCAGCAGGAACAAGTGTGATTGCAACAGCTGGTGCGTTAGGTTACAGAG 1798
|||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 1712 TAATGACAGCAGCAGCAGGATCCAGCGTGATTGCAACAGCTGGTGCGTTAGGTTACAGAG 1771
Query 1799 CACCTGAGCTCTCTAAGCTGAAGAAAGCCAACACAAAAACCGATGTATACAGCCTCGGTG 1858
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1772 CACCTGAGCTCTCTAAGCTGAAGAAAGCCAACACGAAAACCGATGTGTACAGCCTCGGTG 1831
Query 1859 TGATCATATTGGAGCTGTTGACTGGGAAATCTCCGAGTGAGGCCTTAAACGGTGTGGATT 1918
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 TGATCATATTGGAACTGTTGACTGGGAAATCTCCGAGTGAGGCCTTAAACGGTGTGGATT 1891
Query 1919 TGCTTCAATGGGTTGCTACTGCGGTTAAAGAAGAGTGGACTAATGAGGTTTTCGATTTGG 1978
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1892 TGCCTCAATGGGTTGCTACTGCGGTTAAAGAAGAGTGGACTAATGAGGTTTTTGATTTGG 1951
Query 1979 AGCTGTTGAATGATGTGAACACAATGGGTGATGAGATTTTGAATACACTAAAACTGGCTT 2038
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1952 AGCTGTTGAATGATGTGAACACAATGGGTGATGAGATTTTGAATACACTGAAACTGGCTT 2011
Query 2039 TGCATTGTGTTGATCCTACACCATCAACAAGACCTGAAGCTCAACAAGTGATGACACAAC 2098
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 TACATTGTGTTGATGCTACACCATCAACAAGACCTGAAGCTCAACAAGTGATGACACAAC 2071
Query 2099 TTGGAGAGATTAGACCTGAAGAGACA---GCAACAACATCTGAACCATTGATTGATGTTC 2155
|||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 2072 TTGGAGAGATTAGACCGGAAGAGACAACAGCAACAACATCAGAACCGTTGATTGATGTCC 2131
Query 2156 CTGAAGCTTCTGCTTCCACAAGTCAATAG 2184
|||||||||||||||||||||||||||||
Sbjct 2132 CTGAAGCTTCTGCTTCCACAAGTCAATAG 2160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108332776110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5