BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg324140

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56210.5 | Symbols:  | ARM repeat superfamily protein | chr3...   898    0.0  


> AT3G56210.5 | Symbols:  | ARM repeat superfamily protein | chr3:20852385-20855610 
REVERSE LENGTH=1616
Length=1616

 Score =  898 bits (486),  Expect = 0.0
 Identities = 557/590 (94%), Gaps = 10/590 (2%)
 Strand=Plus/Plus

Query  1    ATGCGGATTCTTGCTGCTCGCATAGCTAACCATTTTTGCAGGGCACGAAACGCGTATCAG  60
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  | 
Sbjct  166  ATGCGGATTCTTACTGCTCGCATAGCTAACCATTTTTGCAGGGCACGAAACGCG-A--AT  222

Query  61   CCTCGATCTCGAAATTTCTCCTCGTTGAACAAGAAAGATGACCTTACATTGGAGGAAGAA  120
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  223  CCTCGATCTCGAAATTTCTCCTCGTCGAACAAGAAAGATGACCTTACATTGGAGGAAGAA  282

Query  121  GCTGAGAGGAAAATAGGCTGGTGTCTCAAAATTTTCTTTGCTGGCACTGCAACGTATATC  180
            ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| 
Sbjct  283  GCTGAGAGGAAAATAGGTTGGTGTCTCAAAATTTTCTTTGCGGGCACAGCAACGTATATT  342

Query  181  GGATACCAGTTTTTCCCTTACTTAGGTGATAACTTGATTCATCAATCAATATCGCTTTTA  240
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  343  GGATACCAGTTTTTCCCTTACTTAGGTGATAACTTAATTCATCAATCAATATCGCTTTTA  402

Query  241  CATGTCAAGGATCCTTTGTTTAAGAGAATGGGAGCTTCTAGGCTTTCCCGTTTCGCTATT  300
            ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  403  CATGTGAAGGATCCTTTGTTTAAGAGAATGGGAGCTTCTCGGCTTTCCCGTTTCGCTATT  462

Query  301  GATGATGAAAGGAGGATGAAGGTTGTGGAGATGGGTGGGGCTCAAGAGCTTCTACTTATG  360
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct  463  GATGATGAAAGGAGGATGAAGGTTGTAGAGATGGGTGGGGCTCAAGAGCTACTACATATG  522

Query  361  CTGGGAAGTGCTAAAGATGACAAGACAAGGAAAGAAGCTCTAAAGGCTATTGCTGCTCTC  420
             ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct  523  TTGGGAAGTGCTAAAGATGACAAGACAAGGAAAGAAGCCCTAAAGGCTCTTGCTGCTCTC  582

Query  421  TCTAAATCAG--GCCAGTCTTATGAAGCTGCCAACTTCCTAGGCTCTAATGGAGCACTCT  478
            ||||||||||  || ||  |   |||||||| || |||||||||||||||||||||||||
Sbjct  583  TCTAAATCAGTTGC-AGG-T---GAAGCTGCTAAATTCCTAGGCTCTAATGGAGCACTCT  637

Query  479  CTATCGTCAAATCGACTCCAGATTCCTTGGAAGATACAGACATTTCAACATACAAGTCAA  538
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct  638  CTATCGTCAAATCGACTCCAAATTCCTTGGAAGATTCAGACATTTCAACATACAAGTCAA  697

Query  539  ACATACTCGAGAAGCTAGATGAGAAAAACCTCGCCGTCTCTTCCAACTGA  588
            |||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct  698  ACATACTCGAGAAGCTAGTTGAGAAAAACCTCGCTGTCTCTTCCAACTGA  747



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28281824761


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5