BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg324152 Length=726 Score E Sequences producing significant alignments: (Bits) Value AT3G56350.1 | Symbols: | Iron/manganese superoxide dismutase f... 1125 0.0 > AT3G56350.1 | Symbols: | Iron/manganese superoxide dismutase family protein | chr3:20893946-20895625 REVERSE LENGTH=935 Length=935 Score = 1125 bits (609), Expect = 0.0 Identities = 687/726 (95%), Gaps = 0/726 (0%) Strand=Plus/Plus Query 1 ATGACGACCACCGTCATTATCAGTATCTTCCTTGCGATCTTCGCTACGAGTCTTCAAAAC 60 |||||||||||||| ||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 1 ATGACGACCACCGTTATTATCATTATCTTCGTTGCCATCTTCGCTACGACTCTTCACGAC 60 Query 61 GCCAGAGGAGCAACCATGGAACCGTGTCTCGAATCAATGAAGACTGCTTCACTTCCTGAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 GCCAGAGGAGCAACCATGGAACCGTGTCTCGAATCAATGAAGACTGCTTCGCTTCCTGAT 120 Query 121 CTTCCGTACGCTTATGATGCGTTAGAGCCAGCGATCAGTGAGGAGATCATGCGGCTACAC 180 |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 121 CTTCCGTATGCTTATGATGCGCTAGAGCCAGCAATCAGTGAGGAGATCATGCGGCTACAC 180 Query 181 CACCAGAAACACCACCAGACATATGTCACTCAGTACAACAAAGCCCTAAACAGCCTTCGC 240 || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 181 CATCAGAAACACCACCAGACTTATGTCACTCAGTACAACAAAGCCCTCAACAGCCTTCGT 240 Query 241 TCTGCCATGGCCGACGGTGATCACTCCTCCGTCGTCAAACTCCAAAGCCTCATCAAGTTC 300 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCTGCCATGGCTGACGGTGATCACTCCTCCGTCGTCAAACTCCAAAGCCTCATCAAGTTC 300 Query 301 AACGGCGGAGGTCACGTTAACCATGCAATCTTCTGGAAAAACCTAGCCCCTGTTCATGAA 360 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 301 AACGGCGGAGGGCACGTTAACCATGCAATCTTCTGGAAAAACCTAGCCCCGGTTCATGAA 360 Query 361 GGAGGTGGCAAGCCACCGCACGATCCTTTGTCTTCGGCGATCGATGCTCATTTCGCATCA 420 ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||| Sbjct 361 GGAGGTGGCAAACCACCGCATGATCCTTTGGCTTCGGCGATCGATGCTCATTTCGGATCA 420 Query 421 TTAGAGGGATTGATCCAAAAGATGAACGCGGAAGGCGCTGCCGTGCAGGGATCTGGATGG 480 |||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||| Sbjct 421 CTAGAAGGATTGATCCAAAAAATGAACGCGGAAGGCGCTGCTGTACAGGGATCTGGATGG 480 Query 481 GTGTGGTTTGGATTAGACAGAGAGCTAAAGAGACTTGTCGTTGAGACCACAGCCAATCAG 540 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| Sbjct 481 GTGTGGTTTGGATTAGACAGAGAGCTTAAGAGACTTGTCGTTGAAACCACAGCCAACCAG 540 Query 541 GACCCATTGGTGACGAAGGGATCACACTTAGTTCCTCTAATCGGGATTGACGTGTGGGAG 600 || ||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 541 GATCCATTGGTGACTAAGGGATCACACCTAGTTCCTCTAATTGGGATTGACGTGTGGGAG 600 Query 601 CATGCCTACTATCCACAGTACAAGAATGCTAGAGCGGAGTACTTGAAGAACATATGGACT 660 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 601 CATGCCTACTATCCACAGTACAAGAATGCAAGAGCGGAGTACTTGAAGAACATATGGACT 660 Query 661 GTGATCAACTGGAAATATGCCTCGGACGTATTCGAGAAGCACACTCGTGATCTTGATATT 720 || ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 661 GTAATCAACTGGAAATATGCAGCGGACGTCTTCGAGAAGCACACTCGTGATCTTGATATT 720 Query 721 AACTGA 726 |||||| Sbjct 721 AACTGA 726 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35214137047 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5