BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324152
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56350.1 | Symbols: | Iron/manganese superoxide dismutase f... 1125 0.0
> AT3G56350.1 | Symbols: | Iron/manganese superoxide dismutase
family protein | chr3:20893946-20895625 REVERSE LENGTH=935
Length=935
Score = 1125 bits (609), Expect = 0.0
Identities = 687/726 (95%), Gaps = 0/726 (0%)
Strand=Plus/Plus
Query 1 ATGACGACCACCGTCATTATCAGTATCTTCCTTGCGATCTTCGCTACGAGTCTTCAAAAC 60
|||||||||||||| ||||||| ||||||| |||| ||||||||||||| |||||| ||
Sbjct 1 ATGACGACCACCGTTATTATCATTATCTTCGTTGCCATCTTCGCTACGACTCTTCACGAC 60
Query 61 GCCAGAGGAGCAACCATGGAACCGTGTCTCGAATCAATGAAGACTGCTTCACTTCCTGAT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GCCAGAGGAGCAACCATGGAACCGTGTCTCGAATCAATGAAGACTGCTTCGCTTCCTGAT 120
Query 121 CTTCCGTACGCTTATGATGCGTTAGAGCCAGCGATCAGTGAGGAGATCATGCGGCTACAC 180
|||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 121 CTTCCGTATGCTTATGATGCGCTAGAGCCAGCAATCAGTGAGGAGATCATGCGGCTACAC 180
Query 181 CACCAGAAACACCACCAGACATATGTCACTCAGTACAACAAAGCCCTAAACAGCCTTCGC 240
|| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 181 CATCAGAAACACCACCAGACTTATGTCACTCAGTACAACAAAGCCCTCAACAGCCTTCGT 240
Query 241 TCTGCCATGGCCGACGGTGATCACTCCTCCGTCGTCAAACTCCAAAGCCTCATCAAGTTC 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTGCCATGGCTGACGGTGATCACTCCTCCGTCGTCAAACTCCAAAGCCTCATCAAGTTC 300
Query 301 AACGGCGGAGGTCACGTTAACCATGCAATCTTCTGGAAAAACCTAGCCCCTGTTCATGAA 360
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 AACGGCGGAGGGCACGTTAACCATGCAATCTTCTGGAAAAACCTAGCCCCGGTTCATGAA 360
Query 361 GGAGGTGGCAAGCCACCGCACGATCCTTTGTCTTCGGCGATCGATGCTCATTTCGCATCA 420
||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 361 GGAGGTGGCAAACCACCGCATGATCCTTTGGCTTCGGCGATCGATGCTCATTTCGGATCA 420
Query 421 TTAGAGGGATTGATCCAAAAGATGAACGCGGAAGGCGCTGCCGTGCAGGGATCTGGATGG 480
|||| |||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 421 CTAGAAGGATTGATCCAAAAAATGAACGCGGAAGGCGCTGCTGTACAGGGATCTGGATGG 480
Query 481 GTGTGGTTTGGATTAGACAGAGAGCTAAAGAGACTTGTCGTTGAGACCACAGCCAATCAG 540
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 481 GTGTGGTTTGGATTAGACAGAGAGCTTAAGAGACTTGTCGTTGAAACCACAGCCAACCAG 540
Query 541 GACCCATTGGTGACGAAGGGATCACACTTAGTTCCTCTAATCGGGATTGACGTGTGGGAG 600
|| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 541 GATCCATTGGTGACTAAGGGATCACACCTAGTTCCTCTAATTGGGATTGACGTGTGGGAG 600
Query 601 CATGCCTACTATCCACAGTACAAGAATGCTAGAGCGGAGTACTTGAAGAACATATGGACT 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 CATGCCTACTATCCACAGTACAAGAATGCAAGAGCGGAGTACTTGAAGAACATATGGACT 660
Query 661 GTGATCAACTGGAAATATGCCTCGGACGTATTCGAGAAGCACACTCGTGATCTTGATATT 720
|| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 661 GTAATCAACTGGAAATATGCAGCGGACGTCTTCGAGAAGCACACTCGTGATCTTGATATT 720
Query 721 AACTGA 726
||||||
Sbjct 721 AACTGA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5