BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324161
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56480.1 | Symbols: | myosin heavy chain-related | chr3:209... 2357 0.0
> AT3G56480.1 | Symbols: | myosin heavy chain-related | chr3:20936098-20939631
REVERSE LENGTH=2164
Length=2164
Score = 2357 bits (1276), Expect = 0.0
Identities = 1411/1477 (96%), Gaps = 5/1477 (0%)
Strand=Plus/Plus
Query 1 ATGACGAAAGTGTGTCCTGAAATAGAAGAAGGGACATTATCTTTATCAGTTGTTCCAGTA 60
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 310 ATGACGAAAGTGTGTCCTGAAAT---AGAAGGGACATTATCTTTATCAGTGGTTCCAGTA 366
Query 61 TCAGTAGATGTGAGCTTTGCTTCTAATCACTTTCCAGCATACAAATTAGGACCTGATAAT 120
|||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct 367 TCAGTAGATGTGAGCTTTGCTTCTGATCACTTTCCAACATATAAATTAGGACCTGATAAT 426
Query 121 CAGATAGTAGAGGAACCTAAGGAAGATGAAAAAGGTCCATCAGTCAAAGAGACCGTCGAG 180
||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||
Sbjct 427 CAGATAGTAGAGGAACCAAAGGAAGATGAAAAAGGTCCATCTGTGAAGGAGACTGTCGAG 486
Query 181 AAAGAGAGCGAGCTGTTGTCTGATCAGCACAAGCGGCTTTCGGTCCGTGACCTCGCTAGT 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AAAGAGAGCGAGTTGTTGTCTGATCAGCACAAGCGGCTTTCGGTCCGTGACCTCGCTAGT 546
Query 241 AAATTCGACAAGAATCTTGCTGCAGCTGTTAATTTGGCCGATGAGGCTAAATTAAGAGAG 300
||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct 547 AAATTCGACAAGAATCTTGCTGCAGCTGTTAGTTTGGCTAATGAGGCTAAGTTAAGAGAG 606
Query 301 GTGGCTTCTTTGGAGGGACATGTTATGTTGAAGAAGCTAAGGGATGCTTTAGAATACATG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GTGGCTTCTTTGGAGGGACATGTTATGTTGAAGAAGCTAAGGGATGCTTTAGAATACATG 666
Query 361 AGAGGACGCACGGATGGGCAAAACAAGGAAGATGTGGAGACAGCTATCTCCATGGTCGAA 420
|||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 667 AGAGGACGCACGGATGGGCAAAACAAACAGGATGTGGAGACAGCTATCTCCATGGTGGAA 726
Query 421 GCTCTAGCTGTGAAGTTAACTCAGAATGAAGGTGAATTAATTCAAGAAAAGTTTGAAGTG 480
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 727 GCTCTAGCTGTGAAGTTAACTCAGAATGAAGGTGAATTGATTCAGGAGAAGTTTGAAGTG 786
Query 481 AAGAAACTAGGAAACTTCCTCAAGCAGACTTCAGAAGATGCAAAGAAACTGGTAAATCAG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AAGAAACTAGGAAACTTCCTCAAGCAGACTTCAGAAGATGCAAAGAAACTGGTAAATCAA 846
Query 541 GAAAAGTCATTCGCTTGTGCCGAGATCGAAACTGCTAGGGCCGTTGTGCTGAAACTTGGA 600
|||||||||||| ||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct 847 GAAAAGTCATTCTCTTGTGCTGAGATCGAAACTGCAAGGGCCGTTGTGCTGAGACTTGGA 906
Query 601 GAGGCTTTTGAAGAGCAAGAACGGATTTCTGAAGCTTCTAAAGCTCAGGGGCCGGATGTG 660
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 907 GAGGCTTTTGAAGAACAAGAACGGATTTCTGAAGCTTCTAGAGCTCAGGGGCCGGATGTG 966
Query 661 GAGAAATTGGTAGAGGAGGTTCAAGAGGCTAGGCAAATCAAACGGATGCATCACCCAACA 720
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GAGAAATTGGTTGAGGAAGTTCAAGAGGCTAGGCAAATCAAACGGATGCATCACCCAACA 1026
Query 721 AAGGTGATGGGCATGCAACACGAGCTTCATGGTTTAAGAAATCGAATCCAAGAAAAGTAT 780
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1027 AAGGTGATGGGCATGCAACACGAGCTTCATGGTTTAAGGAATCGAATCCAAGAGAAGTAT 1086
Query 781 ATGAATTCTGTTAAACTTCATAAAGAGATAGCAATAATCAAGAGAGCTGAGGAATCCAAG 840
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1087 ATGAATTCTGTTAAACTTCATAAAGAGATAGCAATAATCAAGAGAGTTGAGGAATCCAAG 1146
Query 841 TCCTGTCCATTTGTTCTTGAAGGCAAGCAAAGTCTCGGCTCTTGCTTACGAATCCGTGTC 900
|| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1147 TCTTGTCCATTTGTTCTTGAAGGCAAACAAAGTCTCGGCTCTTGCTTAAGAATCCGTGTC 1206
Query 901 AATGCTGCA-GACAATGCTCCAGATCTTTCTAACTGTTCGATCCAGTGGTATCGTGCAGC 959
|||||| || |||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1207 AATGCT-CAAGACAATGCTCCAGATCTTTCCAACTGTTCTATTCAGTGGTATCGTGCAGC 1265
Query 960 ATGTGAAACTAGTAGAAGGGAAGCTATATCTGGTGCCATCCAATCGATGTATGCTCCAGA 1019
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 ATGTGAAACTAGTCGCAGGGAAGCTATATCTGGTGCCATCCAATCGATGTATGCTCCAGA 1325
Query 1020 ACCATTTGATGTTGGGAGGATCTTACAGGCAGACATTCTTTCAAAGGGACAAAAGTTCAC 1079
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 1326 ACCATTTGATGTTGGGAGGATATTACAGGCAGACATTCTTTCAAATGGTCAAAAGTTCAC 1385
Query 1080 AGTTACAACCGATGATCCAGTTGATCCTGATTCTGGTTTGCAATCCCGCGTAGAGTCTCT 1139
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||
Sbjct 1386 AGTTACAACCGATGATCCAGTTGATCCTGATTCTGGCTTGCCATCCCGCGTAGAGTCGCT 1445
Query 1140 GATGCGAAAATCCAACAGCGAATTCAGTGTGGTTATATCGCAGATAAATGGACAAGACTA 1199
||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1446 GATGCGAAAGTCTAACAGTGAATTCAGTGTGGTTATATCGCAGATGAATGGACAAGACTA 1505
Query 1200 TGCATCCCGATCTCACGTCTTTACCGTTGGAAAGACGAGGATAAAGCTGTCTCGAGGATG 1259
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TGCATCTCGATCGCACGTTTTTACCGTTGGAAAGACGAGGATAAAGCTGTCTCGAGGATG 1565
Query 1260 GATCACAAAGGCGAGAGAATTATATTCGACATCCATGCAGCTCTGTGGAGTTAGGGGCAA 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1566 GATCACAAAGGCGAGAGAATTATATTCGACATCCATGCAGCTCTGTGGAGTTAGAGGCAA 1625
Query 1320 TATTAAAGCTCCTACCAAGGCAGTGTTCTGGCAACCAAGAAAGAGTCTAACATTCATACT 1379
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1626 TATTAAGGCTCCTACCAAGGCAGTGTTCTGGCAACCAAGAAAGAGTCTAACTTTCATACT 1685
Query 1380 AACCTTTGAGTCAGAACAAGAACGTAACGCAGCCATAGCCCTGGCTCGAAAATACGCTTT 1439
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1686 AACCTTTGAGTCAGAACACGAACGTAACGCAGCCATAGCCCTTGCTCGAAAATACGCTTT 1745
Query 1440 CGATAGCAATGTTACACTGCTTGGTCCAGATGATTAA 1476
|||| ||| ||||||||||||||||||||||||||||
Sbjct 1746 CGATTGCAGTGTTACACTGCTTGGTCCAGATGATTAA 1782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5