BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg324164

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56520.1 | Symbols:  | NAC (No Apical Meristem) domain trans...   678    0.0  


> AT3G56520.1 | Symbols:  | NAC (No Apical Meristem) domain transcriptional 
regulator superfamily protein | chr3:20947107-20947731 
REVERSE LENGTH=528
Length=528

 Score =  678 bits (367),  Expect = 0.0
 Identities = 448/487 (92%), Gaps = 5/487 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGCCAACACACAAAGCTTTGCCCGTAGGATTCAGGTTTCGTCCTACAAACTGTGAG  60
            |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1    ATGGAGCCAACACACAGAGCTTTGCCCGTAGGATTCAGGTTTCGTTCTACAAACTGTGAG  60

Query  61   ATTGCAAACTATTTCTTGAAGAAAAAAGCTTTAGGACAACCCATGAAAGCTCGTACGGTA  120
            ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  61   ATTTCAAACTATTTTTTGAAGAAAAAAGCTTTAGGACAACCCATGAAAGCTCGTACGATA  120

Query  121  CCTGAAGAGTGTCATGATGTCTTCTCGAGACATCCTCGTGATTTTCCTGGCTATCCAAAA  180
            |||||||||||||||||| ||||||| |||||||| | |||| | ||||| |||||||  
Sbjct  121  CCTGAAGAGTGTCATGATATCTTCTCAAGACATCCGCATGATCTGCCTGGTTATCCAAGT  180

Query  181  GAAGAGCACTGGTACTATTTTTGCAGAAAACGTAACAACCAAGTTACTAGTAACTCTCCT  240
            ||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct  181  GAAGAACATTGGTACTATTTTTGCAGAAAACGTGACAACCAAGTTACTAGTAACTCTCAT  240

Query  241  AATCTCTGGACACCAATCGGAGAAGAAACTAATGTGTTAGATCCAAAGAATAATGGTGCC  300
            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||| 
Sbjct  241  AATCTCTGGACACCAATCGGAGAAGAAACCAATGTGCTAGATCCAAAGAATAATGATGCA  300

Query  301  TTAGTCGGTATCAAACGTCGGCTTACTCTCATTGCGCAAGAAGAAGAA---TCTGATAAT  357
            ||||| ||||| || |||||| ||||||| ||||||||||||||||||   |||||||||
Sbjct  301  TTAGTTGGTATTAAGCGTCGGTTTACTCTTATTGCGCAAGAAGAAGAAGAATCTGATAAT  360

Query  358  ATTTGTTTGTCTGATGAAGAAGAAGCTCCAAAGTATAACTGGTTCATGGATGAAATTAGC  417
            |||||||| |||||||| |||||||||  ||||||||| |||||||||||||||||||||
Sbjct  361  ATTTGTTTATCTGATGATGAAGAAGCTTTAAAGTATAATTGGTTCATGGATGAAATTAGC  420

Query  418  CTCCCACAAACAGTAGCAGA-TACTGATTGGGTTTTATGCCATATTTTTGGCAAGACGAT  476
            ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || 
Sbjct  421  CTCCCACAAACAGTAGC-GAATACTGATTGGGTTTTATGCCATATTTTTGGCAAGAAGAC  479

Query  477  TAAACCC  483
            |||||||
Sbjct  480  TAAACCC  486



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5