BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg324165

Length=891
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50220.1 | Symbols:  | F-box family protein | chr5:20446068-...   185    5e-46


> AT5G50220.1 | Symbols:  | F-box family protein | chr5:20446068-20447200 
REVERSE LENGTH=1074
Length=1074

 Score =  185 bits (100),  Expect = 5e-46
 Identities = 267/345 (77%), Gaps = 21/345 (6%)
 Strand=Plus/Plus

Query  447  TTCTATTTATATGTTGATGAGTTTTGATGTTAGAACCGAGAAATTTTG-TCATGTTGACG  505
            |||||  ||| | ||| || |||||||||||| | |||||||| |||| ||| || || |
Sbjct  645  TTCTACGTATGTATTGTTGTGTTTTGATGTTATATCCGAGAAA-TTTGATCAGGTCGAGG  703

Query  506  CTCCAAATACATTGATGGATCA-CTTTTCGTTTCTGATAAACTACCAAGGGAAGTTAGGA  564
            ||||||| ||| |||||||||| |  | |  || ||||||||||||||||||||||||||
Sbjct  704  CTCCAAAGACAATGATGGATCATCGATACACTT-TGATAAACTACCAAGGGAAGTTAGGA  762

Query  565  TTCGTGTGTTGCGGGAAGAGTGTGGAAATTTGGGTTC-GAGAGGATGGCCATCAGAAGAC  623
            ||| ||||||||   ||  | |||||||||||||||  || || |||   || |||| | 
Sbjct  763  TTCATGTGTTGCCAAAACCGGGTGGAAATTTGGGTTATGA-AGAATG---ATGAGAAAAA  818

Query  624  ACAA-ATATGGTCCAAGAtttttttttATGAGATGGAGGGTTTTGAGAAATGGCGAGTTT  682
            |||| | |||||| ||||| || ||||| ||||||| ||||||||||||||||| |  ||
Sbjct  819  ACAAGA-ATGGTCTAAGATATTCTTTTACGAGATGGCGGGTTTTGAGAAATGGC-ACATT  876

Query  683  -CTGGTGTTACTCGTGGTGGTGAGATAGTTTTTGTGAACACTGTATACTT-CTCTGATGA  740
             |  |||  |||| | |||||||||| |||||||| || |  || |  || ||  | || 
Sbjct  877  GCCCGTGCCACTCCTAGTGGTGAGATCGTTTTTGTCAATAG-GT-TG-TTACTAAGTTGC  933

Query  741  CAAG--TTATGTGTCTTA-TATTATGATCCAAAGCGAAATAGTAT  782
            |||   |||| ||||| | ||||||| ||| |||||||| |||||
Sbjct  934  CAAACATTATATGTCT-ACTATTATGGTCCGAAGCGAAACAGTAT  977



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43502771302


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5