BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324170
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56590.2 | Symbols: | hydroxyproline-rich glycoprotein fami... 1247 0.0
AT3G56580.2 | Symbols: | RING/U-box superfamily protein | chr3... 869 0.0
> AT3G56590.2 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr3:20964857-20968019 FORWARD LENGTH=1953
Length=1953
Score = 1247 bits (675), Expect = 0.0
Identities = 733/761 (96%), Gaps = 3/761 (0%)
Strand=Plus/Plus
Query 903 TTTTTCTGTGAATGAATCTGTGTTTGTTATGGGGAAAAATACCGACGCGGAGCAGAATCT 962
||| ||||||||||||||| |||||||||||||||| ||||||| || ||||||||||||
Sbjct 221 TTTCTCTGTGAATGAATCTCTGTTTGTTATGGGGAAGAATACCGTCGAGGAGCAGAATCT 280
Query 963 CCCTGTGAGCGACGGAGCTGCTTCGGCTAGGAATAACGGA---GGAGGAAGAAGCAGATG 1019
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 281 CCCTGTGAGCGACGGAGCTGCTTCGGCTAGGAATAACGGAGGTGGAGGAATAAGCACATG 340
Query 1020 TTGTTGCTGCGATTGGATCTCTAGCTACTTTAGTCTCAGATGCGTTTTGATTCTTGCTTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TTGTTGCTGCGATTGGATCTCTAGCTACTTTAGTCTCAGATGCGTTTTGATTCTTGCTTT 400
Query 1080 CTCTGCTGCTGTGTTTCTCTCCGCCTTGTTTTGGTTACCTCCATTCCTCGGATTTGCAGA 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 TTCTGCTGCTGTGTTTCTCTCCGCCTTGTTTTGGTTACCTCCATTCCTCGGATTTGCAGA 460
Query 1140 TCGAGAGGATCTAGATCTCGATCCAAGGTTTAAAGATCACAGAATTGTGGCGAGTTTTGA 1199
|| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 461 TCCAGGGGATCTAGATCTCGATCCAAGGTTTAAAGATCACAGAATAGTGGCGAGTTTTGA 520
Query 1200 TGTTGGAAAACCAGTTTCGTTCATGGAGGACAATTTGCTGCAGCTTGAGAATGATATCAC 1259
||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 521 TGTTGGAAAACCAATTTCGTTCATGGAAGACAATTTGATGCAGCTTGAGAATGATATCAC 580
Query 1260 CGATGAAATAAGCTTTCCCATGACAAAAGTTGTGGTATTAGCGCTTGAACGATTGGGTGA 1319
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 581 TGATGAAATAAGCTTTCCCATGACCAAAGTTGTGGTATTAGCGCTTGAACGCTTGGGTGA 640
Query 1320 TCTTAACAGAACAATGGTTATTTTTGCCATTGATCCCGAGAAGGAGAATTCTAAGATACC 1379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 641 TCTTAACAGAACAATGGTTATTTTTGCCATTGATCCTGAGAAGGAGAATTCTAAGATACC 700
Query 1380 TGCCGAAATAGAGAGTCTGATCAAGGCAGCTTTTGAAACACTGGTCCAGAAGCAGTTGTC 1439
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 701 TGCCGAAATAGAGAGTCTGATCAAGGCAGCTTTTGAAACTCTGGTCCAAAAGCAGTTGTC 760
Query 1440 TCTCCGTTTGACTGAATCCTTATTTGGGGAACCATTCTTTTTCGAGGTGCTAAAATTCCC 1499
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 761 TTTCCGTTTGACTGAATCCTTGTTTGGGGAACCATTCTTTTTCGAGGTGCTAAAATTCCC 820
Query 1500 TGGAGGAATCACTGTGATCCCTCCCCAGCCTATATTTCCCCTGCAGAAGGCGCAACTTCT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 821 TGGAGGAATCACTGTGATCCCTCCCCAGCCTATATTTCCCCTGCAGAAGGCCCAACTTCT 880
Query 1560 CTTCAACTTCACATTAAACTTTTCGATTTACCAAATTCAATCAAACTTTGAGGAACTCGC 1619
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 TTTCAACTTCACATTAAACTTTTCGATTTACCAAATTCAATCAAACTTTGAGGAACTCGC 940
Query 1620 TAGCCAGCTGAAGAAGGGCATAAATCTGGCTCCCTATGAGA 1660
||||||||||||||||||||||||||||||| |||||||||
Sbjct 941 TAGCCAGCTGAAGAAGGGCATAAATCTGGCTTCCTATGAGA 981
Score = 165 bits (89), Expect = 1e-39
Identities = 97/101 (96%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 1658 AGAGGTTCAACAGTGGCGCCCCCTACTATAGTTCATTCTTCTGTTCTGCTTACATTCGGT 1717
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1008 AGAGGTTCAACAGTGGCGCCTCCTACTATAGTTCATTCTTCTGTTCTACTCACATTCGGT 1067
Query 1718 TCGTCTTCGAGGTTGAAGCAACTTGCTCAAACTATCACTAG 1758
|| ||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TCATCTTCGAGGTTGAAGCAACTTGCTCAAACTATCACTAG 1108
> AT3G56580.2 | Symbols: | RING/U-box superfamily protein | chr3:20961574-20963744
FORWARD LENGTH=1397
Length=1397
Score = 869 bits (470), Expect = 0.0
Identities = 555/593 (94%), Gaps = 18/593 (3%)
Strand=Plus/Plus
Query 1 ATGTCAAGTGTTCGGAATACTCATTGGTGTCACAGATGTCAACGTGCTGTTTGGCTTCGA 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 ATGTCAAGTATTCGGAATACTCATTGGTGTCACAGATGTCAACGTGCTGTTTGGCTTCGA 275
Query 61 GCTCGAGATGCTGTCTGTTCATATTGTGGGGGAGGGTTTGTTGAGGAAATCGATTTAGGA 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 276 GCTCGAGATGCTGTCTGTTCATATTGTGGAGGAGGGTTTGTTGAGGAAATCGA--TA-TA 332
Query 121 CCGAGTAGCCCCTTTGATATGCTTAGAGCTCACAGGGATGTTGACCGTGATCCAACCTTT 180
| | | || | | | ||||||||||||||||||||| |||||||||||||||
Sbjct 333 --G-G-A---CC---G--A-G--TAGAGCTCACAGGGATGTTGAGCGTGATCCAACCTTT 377
Query 181 GATCTCATGGAAGCTTTCTCAGCCTTTATGAGAAGCCGTTTAGCTGAAAGAAGCTATGAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GATCTCATGGAAGCTTTCTCAGCCTTTATGAGAAGCCGTTTAGCTGAAAGAAGCTATGAC 437
Query 241 CGAGAAATCAGCGGAAGAATTGGATCTGCGGGTTCTGAAAGCTTCTCAAACTTAGCTCCT 300
|||||||||||||||||| |||| |||||||||||||||||||| |||||||| ||||||
Sbjct 438 CGAGAAATCAGCGGAAGACTTGGCTCTGCGGGTTCTGAAAGCTTTTCAAACTTGGCTCCT 497
Query 301 TTATTGATCTTCGGTGGCCAAGCTCCCTTTAGATTGGCTGGTGGTGATAATAATTCAGTT 360
|||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 498 CTATTGATCTTTGGTGGCCAAGCTCCCTTTCGATTGGCTGGTGGTGATAATAGTTCAGTT 557
Query 361 GAAGCCTTTGTCAATGGCGCAGCACCTGGGATTGGTATCACACGTGGCACTAATGCCGGA 420
||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||
Sbjct 558 GAAGCCTTTGTCAATGGCGCAGCACCTGGAATTGGTATCGCACGTGGCACCAATGCCGGA 617
Query 421 GACTATTTTTTCGGACCCGGACTTGAAGAACTGATTGAACAGCTTTCGTCAGGCACTCAT 480
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 618 GACTATTTTTTTGGACCCGGTCTTGAAGAACTGATTGAACAGCTTTCCTCAGGCACTCAT 677
Query 481 CACAGAGGCCCACCACCAGCACCAAAATCATCAATTGATGCATTGCCAACCATCAAGATC 540
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 678 CACCGAGGCCCACCACCAGCACCGAAATCATCAATTGATGCATTGCCAACCATCAAGATC 737
Query 541 ACACAGAAGCATCTCAAGTCATCAGACTCTCACTGCCCGGTTTGCAAAGACGA 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 ACACAGAAGCATCTCAAGTCATCAGACTCTCACTGCCCGGTTTGCAAAGACGA 790
Score = 492 bits (266), Expect = 5e-138
Identities = 295/309 (95%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 594 CATAACTCATGCCCAGTCTGTCGCAAAGAGTTACCATCAAGAGGATCTTCTTCAAGCACA 653
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 873 CATAACTCATGCCCAGTCTGTCGTAAAGAGTTGCCATCCAGAGGATCTTCTTCAAGCACA 932
Query 654 CAGAGTAGTCAGAACAGAAGCACCAATGGAAGAGAAAACAGCAGAAGAAGGAATATTTTC 713
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 933 CAGAGTAGTCAGAACAGAAGCACCAATGGAAGAGAAAACAGCAGAAGAAGGAACATTTTC 992
Query 714 TCTAACCTCTGGCCATTCCGCTCGTCTAGCTCAAGCTCGACCCAAAACCGCAGAGACACA 773
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 993 TCTAACCTCTGGCCATTCCGCTCGTCTAGCTCAAGCTCGACTCAAAACCGCAGAGACACA 1052
Query 774 AACAACACAACCACTGCAGAAGAAGGCCACTatcatcat-actcatcagcagcagcaaca 832
||||||||| | ||||||||||||||||||||||||||| || || ||||| ||||||||
Sbjct 1053 AACAACACAGCAACTGCAGAAGAAGGCCACTATCATCATCAC-CAGCAGCAACAGCAACA 1111
Query 833 gcaacaacatcaacatcatcaacaacaatcCCATATGGGTTACAGTGGATGGCCTTTTGA 892
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 ACATCAACATCAACATCAACAACAACAATCCCATATGGGTTACAGTGGATGGCCTTTTGA 1171
Query 893 CTATTAAAG 901
|||||||||
Sbjct 1172 CTATTAAAG 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86947343940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5