BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg324181 Length=1575 Score E Sequences producing significant alignments: (Bits) Value AT3G56700.1 | Symbols: FAR6 | fatty acid reductase 6 | chr3:209... 1672 0.0 > AT3G56700.1 | Symbols: FAR6 | fatty acid reductase 6 | chr3:20999731-21002058 REVERSE LENGTH=1584 Length=1584 Score = 1672 bits (905), Expect = 0.0 Identities = 1363/1580 (86%), Gaps = 48/1580 (3%) Strand=Plus/Plus Query 1 ATGGCTATCACAAATCTCCTTGCCTCAAGCAACCCCGTCAAATTGGATGCCT-TCAGCTA 59 ||||||| ||||||| |||| ||| | ||| || || |||||||| ||| | ||||||| Sbjct 1 ATGGCTACCACAAATGTCCTCGCCACGAGCCACGCCTTCAAATTGAATG-GTGTCAGCTA 59 Query 60 CTTCTCCTC-TCTCTCGGGCAAACAAAACCACTACTTGACT--T-GTCGTTTGA-CGCAG 114 ||||||||| | || | |||||| ||||||||| || || | ||||||| | | || Sbjct 60 CTTCTCCTCTTTTC-CCCGCAAACCTAACCACTACATGCCTCGTCGTCGTTT-ATCACAT 117 Query 115 ACGACTCGTAGAGTCCAAACTTCTTGTTGTAATCATGAGACGTC-TTTGAAAGCTGTGAC 173 || |||||||||||||||||||| |||| | || ||||||||| |||| ||||||| || Sbjct 118 ACTACTCGTAGAGTCCAAACTTCGTGTTTTTATGGTGAGACGTCTTTTG-AAGCTGTAAC 176 Query 174 GTCGCTAGAGATGCATGAGGCTGACACACGTCGTAACTGTGACGGAGTTGGAATTC-TCC 232 |||| ||| | || | || | || ||| |||||||| |||||||| |||||| || ||| Sbjct 177 GTCGTTAGTTACGCCTAAGACAGAAACAAGTCGTAACAGTGACGGAATTGGAA-TCGTCC 235 Query 233 GTTTCTTAAAAGCGAAAAGCTATCTCGTTACTGGTGCAACAGGGTTTCTTGCTAAAGCGT 292 |||||||| ||| |||||||||||| |||||||||||||||||||||||||| |||| || Sbjct 236 GTTTCTTAGAAGGGAAAAGCTATCTTGTTACTGGTGCAACAGGGTTTCTTGCCAAAGTGT 295 Query 293 TGATTGAGAAACTGTTGAGGGCAAGTCCTGAGATTGGGAAGATCTTTCTTCTGATGAGAT 352 ||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||| Sbjct 296 TGATTGAGAAACTGTTGAGGGAAAGTCTTGAAATTGGGAAGATCTTCCTTCTGATGAGAT 355 Query 353 CCAAGGACCAAGAATCAGCCAACAAGAGACCT-TATGATGAGATCATTAGCTCGGATCTT 411 ||||||| ||||||||||| ||||||||| || || ||||||||||| ||||||||||| Sbjct 356 CCAAGGATCAAGAATCAGCAAACAAGAGA-CTCTACGATGAGATCATAAGCTCGGATCTG 414 Query 412 TTCAAGCTTCTGAAGCAAACGCATGGCAGCTCCTACGAAGCCTTCATGAAGAGCAAGCTG 471 ||||||||||||||||||| |||||| ||||| |||||||| ||||||||||| ||| || Sbjct 415 TTCAAGCTTCTGAAGCAAATGCATGGGAGCTCTTACGAAGCTTTCATGAAGAGAAAGTTG 474 Query 472 ATTCCAGGAATTGGAGATATTGGA-GAAGACAACCTCGGGATCGAATCTGAAATAGCTGA 530 ||||||| ||||||||| ||| || |||||||| || |||||| ||||||||||||| | Sbjct 475 ATTCCAGTAATTGGAGACATT-GAGGAAGACAATCTAGGGATCAAATCTGAAATAGC-AA 532 Query 531 A-ATGATTAGTGAAGAGACTGATGTCATTATCAATTGCT-GTGGTCGTACAACATTTGAC 588 | ||||| ||||| |||| |||||| ||||||| ||| | |||||||||||||||| ||| Sbjct 533 ACATGATCAGTGAGGAGATTGATGTTATTATCAGTTG-TGGTGGTCGTACAACATTCGAC 591 Query 589 GACAGATACGACTCTGCCATAAATGTCAATGCTCTTGGACCTGCTTACGTGACTGGTAAG 648 ||||||||||| |||||| ||| |||||||||||||||||| |||||||||||||||||| Sbjct 592 GACAGATACGATTCTGCCCTAAGTGTCAATGCTCTTGGACCGGCTTACGTGACTGGTAAG 651 Query 649 AAAGAGGGGATAGTACTAGAGACTCCTCTCTGCATTGGAGAAAACATAACTTCTGACTTG 708 | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 652 AGAGAGGGGACAGTACTAGAAACTCCTCTCTGCATTGGAGAAAACATAACTTCTGACTTG 711 Query 709 AACATCGACTCCGAGCTGAAACTAGCTTCAGAAGCTGTAAGAAAGTTCCGTGGCAGTGAA 768 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 712 AACATCAAATCCGAGCTGAAACTAGCTTCAGAAGCTGTAAGAAAGTTCCGTGGCAGAGAA 771 Query 769 GAAACCAAGAAACTGAAAGAACTCGGTTTTGAAAGAGCTCAACATTATGGATGGGAAAAC 828 |||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 772 GAAATCAAGAAACTCAAAGAACTCGGTTTTGAAAGAGCTCAACACTATGGGTGGGAAAAT 831 Query 829 ACTTACACATTCACAAAGGCCATGGGTGAAACTATAATTCACAGCAAGCGAGGAGACTTA 888 | ||||||||||||||| ||||| ||||| || |||||||||||||||||||| |||| Sbjct 832 AGTTACACATTCACAAAAGCCATAGGTGAGGCTGTAATTCACAGCAAGCGAGGAAACTTG 891 Query 889 CCCGTAGTGATCATACGGCCTAGTATTATCGAAAGCTCTTACAATGAGCCTTCCCCTGGC 948 || |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 892 CCTGTAGTGATCATAAGGCCTAGTATTATCGAAAGCTCTTACAATGAGCCTTTCCCTGGC 951 Query 949 TGGATCCAAGGAATAAGAATGGTTGATCCAATCATCATCGCCTATGGCAAAGGCCTGATT 1008 ||||||||||| | |||||||| ||||||||||||| | || |||| |||||||| |||| Sbjct 952 TGGATCCAAGGGACAAGAATGGCTGATCCAATCATCTTGGCTTATGCCAAAGGCCAGATT 1011 Query 1009 TCTGGCTTCTGTGCAGATTCTACA-TCTTTGATGGACATTACACCTGTTGATATGGTTGC 1067 |||| |||||| |||||| || || |||||||||||||||| ||||||||| |||||||| Sbjct 1012 TCTGACTTCTGGGCAGATCCT-CAATCTTTGATGGACATTATACCTGTTGACATGGTTGC 1070 Query 1068 TAACGCGGCAATAGCAGTCATGGCAAAGCATGGTTCTGGTGGTGTCCAAGAGCTCAAAGT 1127 ||||| |||||||||| ||||||||||||||||| | |||||||| |||| ||||||| Sbjct 1071 AAACGCAGCAATAGCAGCCATGGCAAAGCATGGTT--G-TGGTGTCCCAGAGTTCAAAGT 1127 Query 1128 TTACAATGTCACTTCTTCATCTCAT-TCGAATCCCC-TGCGATT-TGGCGAGCTGATGGA 1184 ||||||| | ||||||||||||||| | ||| |||| |||| | |||| | |||| || Sbjct 1128 TTACAATTTAACTTCTTCATCTCATGT-GAA-CCCCATGCG-TGCTGGCAAATTGATAGA 1184 Query 1185 CCTATCTTATCAACATCTGCGTAACTCTCCCTTGGGAGAAACAGTGATTGACTTAGCACC 1244 ||| ||| ||||||||||| || ||| ||| |||| |||||||||||| ||||||| | | Sbjct 1185 CCTCTCTCATCAACATCTGTGTGACTTTCCATTGGAAGAAACAGTGATAGACTTAG-AGC 1243 Query 1245 -TATGAAATTCCACAGTTCCTTAGAATGTTTCAGCT-CTTCTGTATATAACGATA-TAAG 1301 ||||||| |||||||||||||||| |||||| || || || ||| ||| | | ||| Sbjct 1244 ATATGAAAATCCACAGTTCCTTAGAGGGTTTCA-CTTCTGCTTTATCGAAC-ACAATAAT 1301 Query 1302 AAAACAGGAAAGAG--ATTCACATAT-ATCCAC-A---TTGAGCAAGAAGGGAAACAGGA 1354 |||||||||||||| ||| | | || | | | ||||||| ||||||||| |||| Sbjct 1302 AAAACAGGAAAGAGTGATTGATA-ATGAAGGAGGAGGATTGAGCACGAAGGGAAAGAGGA 1360 Query 1355 GGCTGGACTATTTTGTGTCCCTGGCAAGAATATATAAGCCTTACATGTTCTTTCAAGCGC 1414 ||| |||||||||||||| |||||| || |||| ||||||||| ||||||||||| | Sbjct 1361 AGCTAAACTATTTTGTGTCCTTGGCAAAAACATATGAGCCTTACACATTCTTTCAAGCTC 1420 Query 1415 GGTTTGACGACACCAACACAACAACTCTGATACAGGAGATGTCAATGGAAGAGAGAAAGA 1474 |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||| | Sbjct 1421 GGTTTGACAACACCAATACAACAAGTCTGATACAGGAGATGTCAATGGAAGAGAAAAAAA 1480 Query 1475 TGTTTGAGTTTGATGCCAGAGGCATTGACTGGGAGCATTACATTGTCAACGTTCATATTC 1534 ||||| ||| ||| || ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1481 CGTTTGGGTTCGATATCAAAGGCATTGACTGGGAGCATTACATTGTCAACGTTCATCTTC 1540 Query 1535 CAGGTCTCAAAA-GGCAATT 1553 |||||||||||| || |||| Sbjct 1541 CAGGTCTCAAAAAGG-AATT 1559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77760644205 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5