BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324181
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56700.1 | Symbols: FAR6 | fatty acid reductase 6 | chr3:209... 1672 0.0
> AT3G56700.1 | Symbols: FAR6 | fatty acid reductase 6 | chr3:20999731-21002058
REVERSE LENGTH=1584
Length=1584
Score = 1672 bits (905), Expect = 0.0
Identities = 1363/1580 (86%), Gaps = 48/1580 (3%)
Strand=Plus/Plus
Query 1 ATGGCTATCACAAATCTCCTTGCCTCAAGCAACCCCGTCAAATTGGATGCCT-TCAGCTA 59
||||||| ||||||| |||| ||| | ||| || || |||||||| ||| | |||||||
Sbjct 1 ATGGCTACCACAAATGTCCTCGCCACGAGCCACGCCTTCAAATTGAATG-GTGTCAGCTA 59
Query 60 CTTCTCCTC-TCTCTCGGGCAAACAAAACCACTACTTGACT--T-GTCGTTTGA-CGCAG 114
||||||||| | || | |||||| ||||||||| || || | ||||||| | | ||
Sbjct 60 CTTCTCCTCTTTTC-CCCGCAAACCTAACCACTACATGCCTCGTCGTCGTTT-ATCACAT 117
Query 115 ACGACTCGTAGAGTCCAAACTTCTTGTTGTAATCATGAGACGTC-TTTGAAAGCTGTGAC 173
|| |||||||||||||||||||| |||| | || ||||||||| |||| ||||||| ||
Sbjct 118 ACTACTCGTAGAGTCCAAACTTCGTGTTTTTATGGTGAGACGTCTTTTG-AAGCTGTAAC 176
Query 174 GTCGCTAGAGATGCATGAGGCTGACACACGTCGTAACTGTGACGGAGTTGGAATTC-TCC 232
|||| ||| | || | || | || ||| |||||||| |||||||| |||||| || |||
Sbjct 177 GTCGTTAGTTACGCCTAAGACAGAAACAAGTCGTAACAGTGACGGAATTGGAA-TCGTCC 235
Query 233 GTTTCTTAAAAGCGAAAAGCTATCTCGTTACTGGTGCAACAGGGTTTCTTGCTAAAGCGT 292
|||||||| ||| |||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 236 GTTTCTTAGAAGGGAAAAGCTATCTTGTTACTGGTGCAACAGGGTTTCTTGCCAAAGTGT 295
Query 293 TGATTGAGAAACTGTTGAGGGCAAGTCCTGAGATTGGGAAGATCTTTCTTCTGATGAGAT 352
||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||
Sbjct 296 TGATTGAGAAACTGTTGAGGGAAAGTCTTGAAATTGGGAAGATCTTCCTTCTGATGAGAT 355
Query 353 CCAAGGACCAAGAATCAGCCAACAAGAGACCT-TATGATGAGATCATTAGCTCGGATCTT 411
||||||| ||||||||||| ||||||||| || || ||||||||||| |||||||||||
Sbjct 356 CCAAGGATCAAGAATCAGCAAACAAGAGA-CTCTACGATGAGATCATAAGCTCGGATCTG 414
Query 412 TTCAAGCTTCTGAAGCAAACGCATGGCAGCTCCTACGAAGCCTTCATGAAGAGCAAGCTG 471
||||||||||||||||||| |||||| ||||| |||||||| ||||||||||| ||| ||
Sbjct 415 TTCAAGCTTCTGAAGCAAATGCATGGGAGCTCTTACGAAGCTTTCATGAAGAGAAAGTTG 474
Query 472 ATTCCAGGAATTGGAGATATTGGA-GAAGACAACCTCGGGATCGAATCTGAAATAGCTGA 530
||||||| ||||||||| ||| || |||||||| || |||||| ||||||||||||| |
Sbjct 475 ATTCCAGTAATTGGAGACATT-GAGGAAGACAATCTAGGGATCAAATCTGAAATAGC-AA 532
Query 531 A-ATGATTAGTGAAGAGACTGATGTCATTATCAATTGCT-GTGGTCGTACAACATTTGAC 588
| ||||| ||||| |||| |||||| ||||||| ||| | |||||||||||||||| |||
Sbjct 533 ACATGATCAGTGAGGAGATTGATGTTATTATCAGTTG-TGGTGGTCGTACAACATTCGAC 591
Query 589 GACAGATACGACTCTGCCATAAATGTCAATGCTCTTGGACCTGCTTACGTGACTGGTAAG 648
||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct 592 GACAGATACGATTCTGCCCTAAGTGTCAATGCTCTTGGACCGGCTTACGTGACTGGTAAG 651
Query 649 AAAGAGGGGATAGTACTAGAGACTCCTCTCTGCATTGGAGAAAACATAACTTCTGACTTG 708
| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 652 AGAGAGGGGACAGTACTAGAAACTCCTCTCTGCATTGGAGAAAACATAACTTCTGACTTG 711
Query 709 AACATCGACTCCGAGCTGAAACTAGCTTCAGAAGCTGTAAGAAAGTTCCGTGGCAGTGAA 768
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 712 AACATCAAATCCGAGCTGAAACTAGCTTCAGAAGCTGTAAGAAAGTTCCGTGGCAGAGAA 771
Query 769 GAAACCAAGAAACTGAAAGAACTCGGTTTTGAAAGAGCTCAACATTATGGATGGGAAAAC 828
|||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 772 GAAATCAAGAAACTCAAAGAACTCGGTTTTGAAAGAGCTCAACACTATGGGTGGGAAAAT 831
Query 829 ACTTACACATTCACAAAGGCCATGGGTGAAACTATAATTCACAGCAAGCGAGGAGACTTA 888
| ||||||||||||||| ||||| ||||| || |||||||||||||||||||| ||||
Sbjct 832 AGTTACACATTCACAAAAGCCATAGGTGAGGCTGTAATTCACAGCAAGCGAGGAAACTTG 891
Query 889 CCCGTAGTGATCATACGGCCTAGTATTATCGAAAGCTCTTACAATGAGCCTTCCCCTGGC 948
|| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 892 CCTGTAGTGATCATAAGGCCTAGTATTATCGAAAGCTCTTACAATGAGCCTTTCCCTGGC 951
Query 949 TGGATCCAAGGAATAAGAATGGTTGATCCAATCATCATCGCCTATGGCAAAGGCCTGATT 1008
||||||||||| | |||||||| ||||||||||||| | || |||| |||||||| ||||
Sbjct 952 TGGATCCAAGGGACAAGAATGGCTGATCCAATCATCTTGGCTTATGCCAAAGGCCAGATT 1011
Query 1009 TCTGGCTTCTGTGCAGATTCTACA-TCTTTGATGGACATTACACCTGTTGATATGGTTGC 1067
|||| |||||| |||||| || || |||||||||||||||| ||||||||| ||||||||
Sbjct 1012 TCTGACTTCTGGGCAGATCCT-CAATCTTTGATGGACATTATACCTGTTGACATGGTTGC 1070
Query 1068 TAACGCGGCAATAGCAGTCATGGCAAAGCATGGTTCTGGTGGTGTCCAAGAGCTCAAAGT 1127
||||| |||||||||| ||||||||||||||||| | |||||||| |||| |||||||
Sbjct 1071 AAACGCAGCAATAGCAGCCATGGCAAAGCATGGTT--G-TGGTGTCCCAGAGTTCAAAGT 1127
Query 1128 TTACAATGTCACTTCTTCATCTCAT-TCGAATCCCC-TGCGATT-TGGCGAGCTGATGGA 1184
||||||| | ||||||||||||||| | ||| |||| |||| | |||| | |||| ||
Sbjct 1128 TTACAATTTAACTTCTTCATCTCATGT-GAA-CCCCATGCG-TGCTGGCAAATTGATAGA 1184
Query 1185 CCTATCTTATCAACATCTGCGTAACTCTCCCTTGGGAGAAACAGTGATTGACTTAGCACC 1244
||| ||| ||||||||||| || ||| ||| |||| |||||||||||| ||||||| | |
Sbjct 1185 CCTCTCTCATCAACATCTGTGTGACTTTCCATTGGAAGAAACAGTGATAGACTTAG-AGC 1243
Query 1245 -TATGAAATTCCACAGTTCCTTAGAATGTTTCAGCT-CTTCTGTATATAACGATA-TAAG 1301
||||||| |||||||||||||||| |||||| || || || ||| ||| | | |||
Sbjct 1244 ATATGAAAATCCACAGTTCCTTAGAGGGTTTCA-CTTCTGCTTTATCGAAC-ACAATAAT 1301
Query 1302 AAAACAGGAAAGAG--ATTCACATAT-ATCCAC-A---TTGAGCAAGAAGGGAAACAGGA 1354
|||||||||||||| ||| | | || | | | ||||||| ||||||||| ||||
Sbjct 1302 AAAACAGGAAAGAGTGATTGATA-ATGAAGGAGGAGGATTGAGCACGAAGGGAAAGAGGA 1360
Query 1355 GGCTGGACTATTTTGTGTCCCTGGCAAGAATATATAAGCCTTACATGTTCTTTCAAGCGC 1414
||| |||||||||||||| |||||| || |||| ||||||||| ||||||||||| |
Sbjct 1361 AGCTAAACTATTTTGTGTCCTTGGCAAAAACATATGAGCCTTACACATTCTTTCAAGCTC 1420
Query 1415 GGTTTGACGACACCAACACAACAACTCTGATACAGGAGATGTCAATGGAAGAGAGAAAGA 1474
|||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 1421 GGTTTGACAACACCAATACAACAAGTCTGATACAGGAGATGTCAATGGAAGAGAAAAAAA 1480
Query 1475 TGTTTGAGTTTGATGCCAGAGGCATTGACTGGGAGCATTACATTGTCAACGTTCATATTC 1534
||||| ||| ||| || ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1481 CGTTTGGGTTCGATATCAAAGGCATTGACTGGGAGCATTACATTGTCAACGTTCATCTTC 1540
Query 1535 CAGGTCTCAAAA-GGCAATT 1553
|||||||||||| || ||||
Sbjct 1541 CAGGTCTCAAAAAGG-AATT 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5