BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324194
Length=2124
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56870.1 | Symbols: | unknown protein; Has 204 Blast hits t... 1921 0.0
> AT3G56870.1 | Symbols: | unknown protein; Has 204 Blast hits
to 201 proteins in 58 species: Archae - 0; Bacteria - 10; Metazoa
- 72; Fungi - 8; Plants - 41; Viruses - 0; Other Eukaryotes
- 73 (source: NCBI BLink). | chr3:21052473-21055597 FORWARD
LENGTH=2439
Length=2439
Score = 1921 bits (1040), Expect = 0.0
Identities = 1231/1322 (93%), Gaps = 18/1322 (1%)
Strand=Plus/Plus
Query 806 TTCAGGATAAGCAAATTGTTTTGTACGGTAGTGTGCCTAGAGAGGAGATGGAATTGGATG 865
||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1012 TTCAGAATAAGCAAATTGTTTTGTACTCTAGTGTGTCTAGAGAGGAGATGGAATTGGATG 1071
Query 866 TTAATCCACAACATTCAGAATATGAGAACTTTGGTTGTGTCGAGAACCTCATTTCTTCTT 925
||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||
Sbjct 1072 TTAATCCACAACATTCAGAATATGAGAACATTGGTTGTGTAAAGAACTTCATTTCTGCTT 1131
Query 926 ACACAAGCTCGGGGTGCGAAGAAGC---TAAAGAGGATGAGGAAAGCAATGAT-TCAAAG 981
|||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||
Sbjct 1132 ACACAAGCTCTGGGTGCGAAGAAGAAGATAAAGAGGATGAGGAAAGCAATGATAT-AAAG 1190
Query 982 GGTAGCTTAGACATGAGCGTAACTGGTTTGGAGATTGTCAAGATAGAAGCTCCAGAAATA 1041
| || |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1191 GCTAACTTAGATATGAGTGTAACTGGTTTGGAGATTGTGAAGATAGAAGCTCCAGAAATA 1250
Query 1042 CTTGCTATTGATTACTCGGGTTGTTTGCCCATCATCAATTTTTGTATAGAAGATTCCGAC 1101
||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1251 CTTGCTATTGATTACCCCGGTTGTTTGTCCATCATCAATTTTTGTGCAGAAGATTCCGAG 1310
Query 1102 ATTCTGTGGGAAACTGAAGACATTACGAAAGATGATTTTCCTGAAGCAGCTGATATTCTC 1161
||| |||||||||||||||||||||| || ||| |||||||||||||| |||||||||||
Sbjct 1311 ATTGTGTGGGAAACTGAAGACATTACTAAGGATAATTTTCCTGAAGCAACTGATATTCTC 1370
Query 1162 CAGCTGACCAACTGTTGTAATTCACTGGATAATTTGCAACCAGTTCCTGATGACAGCACA 1221
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1371 CAGCTGACCAACTGTTGTAATTCACTGGATAATCTGCAACCAGTTCCTGAAGACAGCACA 1430
Query 1222 ATTTCATTAGAAGAATATCATTTGCCAGAAAGATTACAACAATCTTTATACTCCAAACAT 1281
| |||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1431 AGTTCAAAAGAAGAAGATCATTTGACAGAAAGATTACAACAATCTTTATACTCCAAACAT 1490
Query 1282 GAAGATGAAGCAAGAGACCACAAGCTATCACAACTCTATAAGGAACCTGATGAATTTCAA 1341
|||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 1491 GAAGATGAAGCAGGAGACCACAAACTATCACAACTGTATAAGGAACCTGATGAGGTTCAA 1550
Query 1342 AAAGTTGCAGAGACTGACAGTATCCAGCAACAACAGCCACATCACCAACCAGAAAATCTA 1401
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1551 AAAGTTGCAGAGACTGACAGTATCCAGCAACAACAACCACACCACCAACCAGAAAATCTA 1610
Query 1402 CTCTCAGGGAGAAAGGCTTTATCTCCAACCTCTCAAGAAAAACTTCGCAAGGCAATGGAG 1461
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1611 CTCTCTGGGAGAAAGGCTTTATCTCCCACCTCTCAAGAAAAACTTCGCAAGGCAATGGAG 1670
Query 1462 CACCCCGATTCCCCTGAGAAAAGGAGTAAAAAATCAAGAGGGAAACTCTACTTCAGTAGT 1521
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 CACCCTGATTCACCTGAGAAAAGGAGTAAAAAATCAAGAGGGAAACTCTACTTCAGTAGC 1730
Query 1522 CAAAACTCACATAGGATCCTTAAGGCTCAAGGGCTGGATACCATCGACCGAGTGGAAATC 1581
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1731 CAAAACTCACATAGGATCCTTAAGGCTCAAGGGCTGGATAACATTGACCGAGTGGAAATC 1790
Query 1582 ATTCCAGGCTCAAAGCAAGCCATTCAAAAAGCAAGTAATAAAACTCGGCAAA-GA-G--- 1636
|||||| ||||||||||||||||||||||||||| |||||| || ||||||| || |
Sbjct 1791 ATTCCAAGCTCAAAGCAAGCCATTCAAAAAGCAACTAATAATACGCGGCAAATGAAGTAT 1850
Query 1637 C------C-ACACACAAGTTTCCACGTCGAGGGACTCAAGCAGCAAAAGCACAGCCTTTT 1689
| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1851 CAAAGAGCGACACACAAGTTTCCACGTCGAAATACTCAAGCAGCAAAAGCACAGCCTTTT 1910
Query 1690 AGCACTGGATGCGCTTCTATACAAGGATGCTCACAGAAAGCTATTGCCTTCTCGCAAGGG 1749
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 AGCACTGGAGGCACTTCTATACAAGGATGCTCACAGAAAGCTATTGCCTTCTCGCAAGGG 1970
Query 1750 CAATTGTGTGATTTCCAATGTGTTGCAGCTAGGCTCACAAAAGAGCTGAAATCGATGAGA 1809
||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 CAAATGCGTGATTTCCAAAATGTTGCAGCTAGGCTCACAAAAGAGCTGAAATCGATGAGA 2030
Query 1810 CAAATTACAAAGAGATGTCTGCTAGCTGAAAGCAACACCTCCAACATCTCTGACTGTAAC 1869
||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 2031 CAAATCACAAAGAGATGTCTGCAAGCTGAAAGCAACACCTCCAACATGTCTGACTGTAAC 2090
Query 1870 TTAGATGAGGTGAAAACTGTGATTGGAAATGCAGAAAAAACAGAAGAGAGTTGCAAGAAA 1929
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2091 TTAGATGAGGTGAAAACTGTGATTGGAAATGCAGAAAAAACTGAAGAGAGTTGCAAGAAA 2150
Query 1930 TGGCTTTCGATTACAGAGCGTGACTGTAATCGGTTTTGCAAACTCATGGGTATGGTCAGA 1989
||||||||||| | || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 2151 TGGCTTTCGATCATTGAACGTGACTGTAATCGGTTTTGCAAACTCATGAGTATGGTCAGA 2210
Query 1990 GAAGATTCTCCAGCTACTGAGAACGTTGTTCATAAGAAAAAGAAGATTAAATTTGCAGAT 2049
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 2211 GAAGATTCTCCAGCTACTGAGAACATTGTTCATAAGAAAAAGAAGATTAGATTTGCAGAT 2270
Query 2050 GATGCAGGAGGAGATCTTTGCCATGTCAAGGTTTTTGAGATTGATTTGGAATCTGAA-CA 2108
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2271 GATGCAGGAGGAGATCTATGCCATGTCAAGGTTTTTGAGATTGATTTGGAATCTGAATCA 2330
Query 2109 TA 2110
||
Sbjct 2331 TA 2332
Score = 948 bits (513), Expect = 0.0
Identities = 651/715 (91%), Gaps = 19/715 (3%)
Strand=Plus/Plus
Query 1 ATGGTGGTGTTAAGAAGTAGCACCCATTTGAACTCTCATATGCATTATATCCGAACCATT 60
||||||| ||||||||||||||| || |||||||||||| | ||||||||||||||||||
Sbjct 258 ATGGTGGAGTTAAGAAGTAGCACACACTTGAACTCTCATGTACATTATATCCGAACCATT 317
Query 61 CAAGACGGATCTATCAAAATACTGGTGAATATGGAT-GCTAGAAGGAAATCAAAGCTCAA 119
|||||||||||||||||||| || ||||||||||| || ||||| ||| ||||||||||
Sbjct 318 AAAGACGGATCTATCAAAATAGTGATGAATATGGATGGC-AGAAGAAAACCAAAGCTCAA 376
Query 120 ATTTAGACAGTTGGTGGATATATACAATCTTGAACACAGTCAAGATGATGAGTCAGTTCC 179
|||||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||
Sbjct 377 ATTTAGACAGTTGGTGGATATATACAATCTTGAAGACAGTCAAGGTGTTGAGTCAATTCC 436
Query 180 AAGAGTAGTCAGGGATTTGGACAATGTTTCTGATATTACACAAGGTTCTGAGTCTGAAGA 239
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 437 AAGAGTAGTCAGGGATTTGGACAATGGTTCTGATTTTACACAAGGTTCTGAGTCTGAAGA 496
Query 240 TTTTAGCATGACAACACTGGAGAAGATTCGGAAACAATGCAAAGAAAAGAAAAGGAAACT 299
|||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 497 TTTTAGCATGACAACATTGGAGATGATTCAGAAACAATGCAAAGAAAGGAAAAGGAAACT 556
Query 300 TAGAATCCGC-G-GAGA-TACTACTGAGTCA-GCATCAAACGTTGAAGTTAAAAAAGAGT 355
||||| | || | || | |||||||||| || | || ||||||||||||||||||||||
Sbjct 557 TAGAAACTGCAGAGATACTACTACTGAGACATTC-TCGAACGTTGAAGTTAAAAAAGAGT 615
Query 356 ATGTGACTCAAGATGAAGGATGTGATATTGAGGAGCCTCTTAGCAGTTGGGATACGAAAT 415
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 ATGTGACCCAAGATGAAGGATGTGATATTGAGGAGCCTCTTAGCAGTTGGGATACGAAAT 675
Query 416 TCTCCAAGAGAAGAAAGAAAAAGCAAGAGCGTAAA---GCAAAGTGTGTTTCTTCTACTT 472
||||||||||||| ||||| ||||| ||||||||| |||||||||| | |||||||||
Sbjct 676 TCTCCAAGAGAAGGAAGAAGAAGCAGGAGCGTAAAAAAGCAAAGTGTGGTACTTCTACTT 735
Query 473 CCTCTCC---ATCTGTTGCAAAAG-TTGATTTGCATGT-GGTGTTGTTTCATGTCAAGCC 527
||||||| |||||| | ||||| ||||||||| || |||| | ||||||||||||||
Sbjct 736 CCTCTCCTCCATCTGTGG-AAAAGGTTGATTTGCC-GTTGGTGCTCTTTCATGTCAAGCC 793
Query 528 TGAAGCTTGGGATGATAGTTATTCAGTTTCTGAAGCCATGGATTGTAGC-AAAGAGTCAG 586
||||| |||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 794 TGAAGTTTGGGATGATAGCTATTCAGTTTCTGAAGCCATGGATTGTAGTGAAA-AGTCAG 852
Query 587 AATCTCCTACAAATACAGTGTTGGTGGAAGAAATAATGCTTGATTCGTCCAGGGACATGA 646
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 853 AATCTCCTATAAATACAGTGTTGGTGGAAGAAATAATGCTTGATTCGTCCAGTGACATGA 912
Query 647 GGCTGGTTCCATATTGCAGTGCAGAGCCAATTTTTCCTGGAGTGGTTGCCATTGA 701
||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||
Sbjct 913 GGCTGGTTCCATACTGCAGTGCAGAGCCAAATTTTCCCGGAGTGGTAGCCATTGA 967
Score = 69.4 bits (37), Expect = 1e-10
Identities = 47/51 (92%), Gaps = 3/51 (6%)
Strand=Plus/Plus
Query 719 AGCCGTTAGAGGAAGCTTTTGAAGATGCATCAGAAGAGTTT-GACGATGCT 768
|||| || ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 959 AGCCATT-GAGGAAGCTTTTGAAGATGCATCAGAAGAGTTTAG-CGATGCT 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105320743410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5