BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg324196

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56891.1 | Symbols:  | Heavy metal transport/detoxification ...   715    0.0  


> AT3G56891.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr3:21064199-21064922 REVERSE LENGTH=501
Length=501

 Score =  715 bits (387),  Expect = 0.0
 Identities = 474/514 (92%), Gaps = 14/514 (3%)
 Strand=Plus/Plus

Query  1    ATGTTTGATTGGATACATGGAAACTCTCGATTACCAATAGCCTTATCTATTGTGGAGCTT  60
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  1    ATGTTTGATTGGATACATGGAAACTCTCGATTACCAATCGCTTTATCTATTGTGGAGCTT  60

Query  61   TTGGTAGACATGGATTGTCAAGGATGTGAAAAGAAGGTTCGAAGAGCCATTTCCAAACTC  120
            |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  61   TTGGTAGACATGGATTGTAAAGGATGTGAAAAGAAGGTTCGAAGAGCCATTTCTAAACTC  120

Query  121  GATGGAGTGGACACGATAGAGATAGACGTGGATCGACAAAAAGTGACAGTCACAGGATAC  180
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  GATGGAGTGGACACGGTAGAGATAGACGTGGATCGACAAAAAGTGACAGTCACGGGATAC  180

Query  181  GTTGATAGAGAAGAGGTTCTAAAAATGGTTAAACAAACAGGACGAACAGCGGAAT-TCTG  239
            |||||| |||||||||||||||| ||||| |||| ||| |||||||||||||||| | ||
Sbjct  181  GTTGATCGAGAAGAGGTTCTAAAGATGGTGAAACGAACGGGACGAACAGCGGAATAT-TG  239

Query  240  GCCTTTTCCTTACAATGGATATTATGGTGATTACTATACATATCCTTCTCAACATTTGGA  299
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  GCCATTTCCTTACAATGGATATTATGGTGATTACTATACATATCCTTCTCAACATTTGGA  299

Query  300  ACAATCCAATCAGAAGATATATCAAGCAGAAAATACTTTTTCATATAATGGAAAGTACGA  359
            ||||||  |||||||||||||||| | | ||  | ||    |||||| ||||||||| ||
Sbjct  300  ACAATCGGATCAGAAGATATATCA-G-ACAA--T-CT----CATATAGTGGAAAGTATGA  350

Query  360  TTTCTATGACGTCGACGACTTTCAAAATACGAACAACTCTTCTATCAACGGTTATTATCT  419
            |||||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||| 
Sbjct  351  TTTCTATGACGTTGACGACTTTCAAAATACAAACAACTCTACTATCAATGGTTATTATCC  410

Query  420  TCGTCCATCCCAAAAAGTTCAACCTAATACTATCGATGAAAATGCTCTTCATCTTTTTAG  479
            | || |||||||||||||||||||||||| |  |||||||||||||||||||||||||||
Sbjct  411  TAGTTCATCCCAAAAAGTTCAACCTAATA-T--CGATGAAAATGCTCTTCATCTTTTTAG  467

Query  480  CGATGATAATGCACATGCTTGTATTATCATGTGA  513
            |||||||||||| |||||||||| ||||||||||
Sbjct  468  CGATGATAATGCTCATGCTTGTACTATCATGTGA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5