BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324207
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56980.1 | Symbols: BHLH039, ORG3 | basic helix-loop-helix (... 1218 0.0
AT3G56970.1 | Symbols: BHLH038, ORG2 | basic helix-loop-helix (... 739 0.0
AT2G41240.1 | Symbols: BHLH100 | basic helix-loop-helix protein... 268 4e-71
> AT3G56980.1 | Symbols: BHLH039, ORG3 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein | chr3:21086546-21087494
REVERSE LENGTH=843
Length=843
Score = 1218 bits (659), Expect = 0.0
Identities = 733/769 (95%), Gaps = 3/769 (0%)
Strand=Plus/Plus
Query 1 ATGTGTGCATTAGTACCTCCATTGTTCCCAAACTTTGGGTGGCCATCAACGGGAGAGTAC 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGTGCATTAGTACCTCCATTGTTTCCAAACTTTGGGTGGCCATCAACGGGAGAGTAC 60
Query 61 GACAGCTACTACCTAGCCGGAGATATCCTCAACAACGGCGCGTTTCTTGATTTTCCGGTA 120
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 GACAGCTACTACCTCGCCGGAGATATCCTCAACAACGGCGGGTTTCTTGATTTTCCGGTA 120
Query 121 CCGGAGGAGACTTATGGAGCTGTTACAGCGGTGACTCATCATCAG---AGCTTTGGGGTT 177
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||
Sbjct 121 CCGGAGGAGACTTATGGAGCTGTTACAGCGGTGACTCAACATCAGAATAGCTTTGGTGTT 180
Query 178 TCTGCTTCGTCGGAAGGAAATGAAATAGACAACAATCCGGTGGTCGTCAAGAAGCTTAAT 237
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTGTTTCGTCGGAGGGAAATGAAATAGACAACAATCCGGTGGTCGTCAAGAAGCTTAAT 240
Query 238 CACAATGCTAGTGAGCGTGACCGTCGCAAGAAAATTAACTCTTTGTTCTCATCTCTCCGT 297
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 CACAATGCTAGTGAGCGTGACCGTCGCAGGAAAATTAACTCTTTGTTCTCATCTCTCCGT 300
Query 298 TCATGTCTTCCTGCCTCCGACCAATCGAAGAAGCTAAGCATTCCTGCGACAGTTTCTCGA 357
||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 301 TCATGTCTTCCTGCCTCTGGCCAATCGAAGAAGCTAAGCATTCCTGCGACGGTTTCTCGA 360
Query 358 AGCTTGAAGTACATACCAGAGCTGCAAGAGCAAGTGAAGAAGCTAATAAAAAAGAAGGAA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGCTTGAAGTACATACCAGAGCTGCAAGAGCAAGTGAAGAAGCTAATAAAAAAGAAGGAA 420
Query 418 GAACTCTTGGTGCAAGTGTCAGGTCAAAGAAACATTGAACATTACGTTAAGCCGCAACCA 477
|| |||||||||||| | |||||||||||||||| |||| ||||||||||| || ||||
Sbjct 421 GAGCTCTTGGTGCAAATTTCAGGTCAAAGAAACACTGAATGTTACGTTAAGCAGCCACCA 480
Query 478 AAGGCGGTGGCGAGTTACATCTCGACCGTGTCTGCGACTAGGCTTGGAGACAACGAAGTG 537
||||| || |||| ||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 481 AAGGCCGTCGCGAATTATATCTCGACCGTTTCTGCGACTAGGCTTGGTGACAACGAAGTG 540
Query 538 ATGGTCCAAATCTCATCGTCTAAGATTCATAACTTTTCGATATCTAATGTTTTAAGTGGG 597
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGGTCCAAATCTCATCGTCCAAGATTCATAACTTTTCGATATCTAATGTTTTAAGTGGG 600
Query 598 TTAGAAGAAGATGGGTTTGTTCTTGTGGATATTTCATCTTCAAGGTCTCAAGGAGAAAGG 657
|||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 601 TTAGAAGAAGATAGGTTTGTTCTTGTGGACATGTCATCTTCAAGGTCTCAAGGAGAAAGG 660
Query 658 CTTTTCTACACTTTCCATCTACAAATGGACAAGATTGAAAATTACAAGCTGAATTGCGAA 717
|||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 661 CTTTTCTACACTTTGCATTTACAAGTGGAGAAGATTGAAAATTACAAGCTGAATTGCGAA 720
Query 718 GAGTTAAGTCAGAGGATGTTGTACTTGTATGAGGAATGTGGAAACTCAT 766
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGTTAAGTCAGAGGATGTTGTACTTGTATGAGGAATGTGGAAACTCAT 769
> AT3G56970.1 | Symbols: BHLH038, ORG2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein | chr3:21084110-21085150
REVERSE LENGTH=912
Length=912
Score = 739 bits (400), Expect = 0.0
Identities = 653/774 (84%), Gaps = 22/774 (3%)
Strand=Plus/Plus
Query 1 ATGTGTGCATTAGTACCTCCATTGTTCCCAAACTTTGGGTGGCCATCAACGGGA-GAGTA 59
|||||||||||||| ||| |||| ||| ||||||| || ||||| ||||| | | | ||
Sbjct 57 ATGTGTGCATTAGTCCCTTCATTTTTCACAAACTTCGGTTGGCCGTCAAC-GAATCAATA 115
Query 60 CGACAGCTACTAC-CTAGCCGGAGATATCCTCAACAACGGCGCGTTTCTTGATTTTCCGG 118
||| ||||| ||| | |||||||||| ||| || |||||| | |||||||| || |||
Sbjct 116 CGAAAGCTATTACGGT-GCCGGAGATAACCTAAATAACGGCACATTTCTTGAATTGACGG 174
Query 119 TACCGGAGGAGACTTATGGAGCTGTTACAGCGGTGACTCATCATCAGAGCTTTGGG-GTT 177
|||| | ||||||||| || || | | | | |||||| | ||| ||||| ||
Sbjct 175 TACC--A-CAGACTTATGAAG-TG----A-C--TCA-TCATCAGAATAGC-TTGGGAGTA 221
Query 178 TCTGCTTCGTCGGAAGGAAATGAAATAGACAACAATCCGGTGGTCGTCAAGAAGCTTAAT 237
|||| |||||| ||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 222 TCTGTTTCGTCAGAAGGAAATGAGATAGACAACAATCCGGTTGTGGTCAAGAAGCTTAAT 281
Query 238 CACAATGCTAGTGAGCGTGACCGTCGCAAGAAAATTAACTCTTTGTTCTCATCTCTCCGT 297
|||||||||||||| |||||||| |||||||| || ||| ||||||||||||||||||||
Sbjct 282 CACAATGCTAGTGAACGTGACCGACGCAAGAAGATCAACACTTTGTTCTCATCTCTCCGT 341
Query 298 TCATGTCTTCCTGCCTCCGACCAATCGAAGAAGCTAAGCATTCCTGCGACAGTTTCTC-G 356
||||||||||| || || || ||||||||||||||||| ||||||| || ||||| |
Sbjct 342 TCATGTCTTCCAGCTTCTGATCAATCGAAGAAGCTAAGTATTCCTGAAACGGTTTCAAAG 401
Query 357 AAGCTTGAAGTACATACCAGAGCTGCAAGAGCAAGTGAAGAAGCTAATAAAAAAGAAGGA 416
| |||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||
Sbjct 402 A-GCTTAAAGTACATACCAGAGCTGCAACAGCAAGTGAAGAGGCTAATACAAAAGAAGGA 460
Query 417 AGAACTCTTGGTGCAAGTGTCAGGTCAAAGAAACATTGAACATTACGTTAAGCCGCAACC 476
|||| | ||||| | ||| || ||||||||| || |||| | ||||| ||||| ||||||
Sbjct 461 AGAAATTTTGGTACGAGTATCGGGTCAAAGAGACTTTGAGCTTTACGATAAGCAGCAACC 520
Query 477 AAAGGCGGTGGCGAGTTA-CATCTCGACCGTGTCTGCGACTAGGCTTGGAGACAACGAAG 535
||||||||| |||||||| | |||| || || ||||| ||||||||||| ||||||||||
Sbjct 521 AAAGGCGGTCGCGAGTTATC-TCTCAACGGTTTCTGCCACTAGGCTTGGTGACAACGAAG 579
Query 536 TGATGGTCCAAATCTCATCGTCTAAGATTCATAACTTTTCGATATCTAATGTTTTAAGTG 595
||||||||||| |||||||||| ||||||||||||||||||||||| ||||| || |||
Sbjct 580 TGATGGTCCAAGTCTCATCGTCCAAGATTCATAACTTTTCGATATCAAATGTGTTGGGTG 639
Query 596 GGTTAGAAGAAGATGGGTTTGTTCTTGTGGATATTTCATCTTCAAGGTCTCAAGGAGAAA 655
|| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
Sbjct 640 GGATAGAAGAAGATGGGTTTGTTCTTGTGGATGTTTCATCATCAAGATCTCAAGGAGAGA 699
Query 656 GGCTTTTCTACACTTTCCATCTACAAATGGACAAGATTGAAAATTACAAGCTGAATTGCG 715
|||| ||||||||||| ||||| ||| |||| || || || |||||||| | |||||||
Sbjct 700 GGCTCTTCTACACTTTGCATCTTCAAGTGGAGAATATGGATGATTACAAGATTAATTGCG 759
Query 716 AAGAGTTAAGTCAGAGGATGTTGTACTTGTATGAGGAATGTGGAAACTCATTTA 769
|||| |||||| | ||||||||||||||||| ||| |||||| |||||| ||||
Sbjct 760 AAGAATTAAGTGAAAGGATGTTGTACTTGTACGAGAAATGTGAAAACTCGTTTA 813
> AT2G41240.1 | Symbols: BHLH100 | basic helix-loop-helix protein
100 | chr2:17198331-17199320 REVERSE LENGTH=729
Length=729
Score = 268 bits (145), Expect = 4e-71
Identities = 442/580 (76%), Gaps = 41/580 (7%)
Strand=Plus/Plus
Query 209 ACAATCCGGTGGTCG-TCAAGAAGCTTAATCACAATGCTAGTGAGCGTGACCGTCGCAAG 267
||||||| ||||| | | ||||||||||||||||| || ||||| ||||| |||||||||
Sbjct 167 ACAATCCCGTGGT-GATGAAGAAGCTTAATCACAACGCGAGTGAACGTGAGCGTCGCAAG 225
Query 268 AAAATTAACTCTTTGTTCTCATCTCTCCGTTCATGTCTTCCTGCCTCCGACCAATCGAAG 327
|| || ||| | ||||||||||||| ||||| ||||||||| || || | ||| |||||
Sbjct 226 AAGATCAACACAATGTTCTCATCTCTTCGTTCTTGTCTTCCTCCCACCAATCAAACGAAG 285
Query 328 AAGCTAAGCATTCCTGCGACAGTTTCTCGAAGC-TTGAAGTACATACCAGAGCTGCAAGA 386
||| |||| || | || |||||||| | |||| ||||||||||||||||||||||||||
Sbjct 286 AAGTTAAGTGTTTCGGCAACAGTTTCAC-AAGCATTGAAGTACATACCAGAGCTGCAAGA 344
Query 387 GCAAGTGAAGAAGCTAATAAAAAAGAAGGAAGAACTCTTGGTGCAAGTGTCAGGTCAAAG 446
|||||| || ||||| || || ||||| ||||| |||| | | ||| | || ||||||||
Sbjct 345 GCAAGTTAAAAAGCTCATGAAGAAGAAAGAAGAGCTCTCGTTTCAAATTTCGGGTCAAAG 404
Query 447 AAA-CA--TTGA-ACATTACGTTAAGCCGCAAC-CAAAGGC-GGTGG---CGAGTTACAT 497
| | | || | || || || | | || || ||| || || | || ||
Sbjct 405 AGATCTCGTTTACACCG-ACCAAAA-CAGTAAGTCAGAGGAAGG-GGTTACAAGCTATG- 460
Query 498 C-TCGACCGTGTCTGCGACTAGGCTT-G-GAGACAACGAAGTGATGGTCCAAATCTCATC 554
| ||||| || ||| |||||||||| | ||||| ||||||||||||||||| |||||
Sbjct 461 CGTCGACAGTTTCTTCGACTAGGCTCAGTGAGACT--GAAGTGATGGTCCAAATTTCATC 518
Query 555 GTCTA-AGATTCATAACTTTTCGATATCT-AATGTTTTAAGTGG-GTTAGAAGAAGATGG 611
|| || ||| | | || | |||| | | ||||| || ||||| || ||||||||||||
Sbjct 519 GT-TACAGACTGAAAAATGTTCGTT-TGGGAATGTCTTGAGTGGTGT-AGAAGAAGATGG 575
Query 612 GTTTGTTCTTGTGGATATTTCATCTTCAAGGTCTCAAGGAGAAAGGCT-TTTCTACACTT 670
||| |||||||||| | |||||||||||||||||| ||||| | || ||| ||| ||
Sbjct 576 GTTGGTTCTTGTGGGTGCTTCATCTTCAAGGTCTCATGGAGAGCGACTCTTT-TACTCTA 634
Query 671 TCCATCTACAAATGGACAAGATTGAAAATTACAAGCTGAATTGCGAAGAGTTAAGTCAGA 730
| ||||| || || | || | || | | || |||||| |||||| ||| || | |
Sbjct 635 TGCATCTTCAGAT--A-AA-A---AA--TGGCCAGGTGAATTCCGAAGAATTAGGTGATA 685
Query 731 GGAT-GTTGTACTTGTATGAGGAATGTGGAAACTCATTTA 769
| || |||||||||||| ||| |||||||| |||| ||||
Sbjct 686 G-ATTGTTGTACTTGTACGAGAAATGTGGACACTCGTTTA 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5