BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324222
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57130.1 | Symbols: BOP1 | Ankyrin repeat family protein / B... 2241 0.0
AT2G41370.1 | Symbols: BOP2 | Ankyrin repeat family protein / B... 747 0.0
> AT3G57130.1 | Symbols: BOP1 | Ankyrin repeat family protein /
BTB/POZ domain-containing protein | chr3:21147835-21150027
FORWARD LENGTH=1404
Length=1404
Score = 2241 bits (1213), Expect = 0.0
Identities = 1343/1407 (95%), Gaps = 3/1407 (0%)
Strand=Plus/Plus
Query 1 ATGAGCAGTACTTTCGAAGAATCCCTCAAATCTATGTCGTTGGATTACCTAAACCTCTTA 60
||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAGCAATACTTTCGAAGAATCACTCAAATCTATGTCATTGGATTACCTAAACCTCTTA 60
Query 61 ATCAACGGTCAAGCTTTCTCTGATGTCACTTTCAGCGTCGAAGGCCGTTTAGTCCACGCT 120
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 61 ATCAACGGTCAAGCTTTCTCCGATGTCACTTTCAGCGTCGAAGGCCGTCTAGTCCACGCT 120
Query 121 CACCGTTGCATCCTCGCCGCTCGTAGCCTCTTCTTCCGCAAGTTCTTCTGCGAATCTGAT 180
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 121 CACCGTTGCATCCTCGCTGCTCGTAGCCTCTTCTTCCGCAAATTCTTCTGTGAATCTGAT 180
Query 181 CCTTCGCAAAGCGGAGCTGAACAGGCTAACCAAACCGGATCAGGAGCCAGAGCAGCTGCA 240
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 181 CCTTCGCAACCCGGAGCTGAACCCGCTAACCAAACCGGATCAGGAGCCAGAGCAGCCGCA 240
Query 241 GTGGGAGGAGTGATACCGGTTAACTCGGTCGGTTACGAAGTTTTCTTACTTCTACTTCAG 300
|| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GTAGGAGGAGTCATACCGGTTAACTCAGTCGGTTACGAAGTTTTCTTACTTCTACTTCAA 300
Query 301 TTCTTATACAGTGGTCAAGTCTCAATTGTACCACATAAGCACGAGCCAAGATCGAATTGT 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCTTGTACAGTGGTCAAGTCTCAATTGTACCACATAAGCACGAGCCAAGATCGAATTGT 360
Query 361 GGAGATAGGGGATGCTGGCACACGCATTGCACTGCAGCCGTCGATCTCTCTTTAGATATC 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGAGATAGAGGATGCTGGCACACGCATTGCACTGCAGCCGTCGATCTCTCTTTAGATATT 420
Query 421 TTAGCCGCCGCTCGATATTTTGGCGTCGAGCAGCTCGCGTTACTTACGCAGAAACATTTG 480
|||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 421 TTAGCCGCCGCTCGCTACTTTGGCGTCGAGCAGCTCGCGTTGCTTACTCAGAAACATTTG 480
Query 481 ACAAGTATGGTGGAGAAAGCCTCCGTTGAAGATGTGATGAAAGTGCTGATAGCTTCAAGA 540
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 481 ACAAGTATGGTGGAGAAAGCCTCCATTGAAGATGTGATGAAAGTGCTCATAGCTTCAAGA 540
Query 541 AAGCAAGACATGCATCAATTATGGACCACTTGCTCTTACCTAATCGCCAAATCCGGTCTT 600
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 541 AAGCAAGACATGCATCAATTATGGACTACTTGCTCTTACTTAATCGCCAAATCCGGTCTT 600
Query 601 CCACAAGAGATTCTAGCCAAACATCTCCCAATCGAACTTGTAGCCAAGGTTGAGGAGCTC 660
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 CCACAAGAGATTCTAGCCAAACATCTCCCAATCGAACTTGTAGCCAAGATTGAGGAGCTC 660
Query 661 CGTCTCAAATCTTCAATGCCTCTTCGTTCCCTAATGCCTCACCACCATGACCTAACCTCG 720
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 661 CGTCTCAAATCTTCAATGCCTCTCCGTTCACTAATGCCTCACCACCATGACCTAACCTCG 720
Query 721 TCTTTAGACCTCGAGGACCAGAAGATCAGGAGGATGAGACGTGCATTGGATTCCTCCGAT 780
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 721 ACTTTAGACCTCGAAGACCAGAAGATCAGGAGGATGAGACGTGCATTGGACTCCTCTGAT 780
Query 781 GTCGAGCTTGTGAAGCTAATGGTGATGGGAGAAGGACTCAATCTAGATGAGTCCCTAGCT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTCGAGCTTGTGAAGCTAATGGTGATGGGAGAAGGACTCAATCTAGATGAGTCCCTAGCT 840
Query 841 TTGATTTACGCCGTTGAGAATTGTAGTAGAGAGGTTGTGAAGGCACTTCTTGAGCTTGGA 900
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 TTGATTTACGCGGTTGAAAATTGTAGTAGAGAGGTTGTAAAGGCACTTCTTGAGCTTGGA 900
Query 901 GCAGCCGATGTGAACTATCCCGCCGGTCCCACAGGGAAAACCGCTCTTCACATCGCGGCT 960
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 901 GCAGCTGATGTGAACTATCCCGCGGGTCCCACAGGGAAAACCGCTCTTCACATTGCGGCT 960
Query 961 GAAATGGTCTCTCCGGACATGGTGGCTGTCTTACTTGACCACCACGCTGACCCAAACGTG 1020
|||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 961 GAAATGGTGTCTCCGGACATGGTGGCTGTTTTACTCGACCACCACGCCGACCCTAACGTC 1020
Query 1021 CAGACTGTGGATGGAATCACTCCTCTCGACATCCTTAGAACCCTAACGTCGGATTTTTTG 1080
||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1021 CAGACAGTGGATGGAATCACTCCTCTCGACATCCTTCGAACCCTAACGTCAGATTTTTTG 1080
Query 1081 TTCAAGGGGGCGATTCCTGGATTGACTCATATTGAGCCCAATAAGCTCAGGCTTTGTCTC 1140
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1081 TTCAAGGGGGCAATTCCTGGATTGACTCACATTGAGCCCAATAAGCTTAGGCTTTGTCTC 1140
Query 1141 GAGCTGGTCCAGTCCGCGGCATTGGTTATATCACGCGAAGAAGGAAACAATACCAGTAAC 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1141 GAGCTGGTCCAGTCCGCGGCATTGGTTATATCACGCGAAGAAGGAAACAATAACAGTAAC 1200
Query 1201 GACAACAACGCAATGATCTACCCTAGAATGAAAGACGAACACACGAGCGGAAGTAGTTTG 1260
|| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1201 GATAACAACACAATGATCTACCCTAGGATGAAAGACGAACACACGAGCGGAAGTAGTTTG 1260
Query 1261 GATTCAAGATTGGTTTATCTGAATCTTGGTGCTACAAATCGGGATCTTGGGGATGAAAAT 1320
||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |||
Sbjct 1261 GATTCAAGATTGGTTTATCTGAATCTTGGTGCTACAAATCGTGATATTGGAGATGACAAT 1320
Query 1321 AGCAATCAAAGGGAAGGAATGAATCTGcatcatcatcatcatgacccatcaacgatgtat 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGCAATCAAAGGGAAGGAATGAATCTGCATCATCATCATCATGACCCATCAACGATGTAT 1380
Query 1381 catcatcaccaccaccaccatTTCTAG 1407
||||| | | |||||||||||||||||
Sbjct 1381 CATCA-C-C-ACCACCACCATTTCTAG 1404
> AT2G41370.1 | Symbols: BOP2 | Ankyrin repeat family protein /
BTB/POZ domain-containing protein | chr2:17237745-17240440
REVERSE LENGTH=1987
Length=1987
Score = 747 bits (404), Expect = 0.0
Identities = 796/981 (81%), Gaps = 44/981 (4%)
Strand=Plus/Plus
Query 253 ATACCGGTTAACTCGGTCGGTTACGAAG-TTTTCTTACTT-CTACTTCAG-TTCTTATAC 309
||||| || ||||| |||||||| || | ||||| | || ||||||||| ||||| ||
Sbjct 505 ATACCAGTGAACTCAGTCGGTTATGAGGTTTTTC-T-GTTGCTACTTCAGTTTCTT-TAT 561
Query 310 AGTGGTCAAGTCTCAATTGTACCACATAAGCACGAGCCAAGATCGAATTGTGGAGATAGG 369
|| || |||||||| || || || || || |||||||| ||| | |||||||| || ||
Sbjct 562 AGCGGACAAGTCTCCATCGTGCCGCAGAAACACGAGCCTAGACCTAATTGTGGCGAGAGA 621
Query 370 GGATGCTGGCACACGCATTGCACTGCAGCCGTCGATC-T-CTCTTTAGATATCT-TAGCC 426
||||| |||||||| |||||| | || ||||| |||| | ||| || |||| || | |||
Sbjct 622 GGATGTTGGCACACTCATTGCTCAGCCGCCGTTGATCTTGCTC-TT-GATA-CTCTCGCC 678
Query 427 GCCGCTCGATATTTTGGCGTCGAGCAGCTCGCGTTACTTACGCAGAAACATTTGACAAGT 486
||| |||| || || ||||||||||||||||| || || || |||||||| ||| ||||
Sbjct 679 GCCTCTCGTTACTTCGGCGTCGAGCAGCTCGCATTGCTCACCCAGAAACAATTGGCAAGC 738
Query 487 ATGGTGGAGAAAGCCTCCGTTGAAGATGTGATGAAAGTGCTGATAGCTTCAAGAAAGCAA 546
||||||||||||||||| | ||||||||||||||||| | ||||| ||||||||||||
Sbjct 739 ATGGTGGAGAAAGCCTCTATCGAAGATGTGATGAAAGTTTTAATAGCATCAAGAAAGCAA 798
Query 547 GACATGCATCAATTATGGACCACTTGCTCTTACCTAATCGCCAAATCCGGTCTTCCACAA 606
||||||||||||||||||||||| |||||| || || | || ||||| ||||| |||| |
Sbjct 799 GACATGCATCAATTATGGACCACCTGCTCTCACTTAGTTGCTAAATCAGGTCTCCCACCA 858
Query 607 GAGATTCTAGCCAAACATCTCCCAATCGAACTT-GT-AGCCAAGGTTGAGGAGCTCCGTC 664
|||||||| ||||| |||||||| || || | | || | |||| | || ||||| ||||
Sbjct 859 GAGATTCTTGCCAAGCATCTCCCTATTGA-CGTCGTCA-CCAAAATAGAAGAGCTTCGTC 916
Query 665 TCAAATCTTCAAT-GCCTCTTCGTTCCCTAATGCCTCACCACCATGACC-TAACCTC-G- 720
| |||||||| || || || ||||| |||||||||||| |||| ||| | | ||| |
Sbjct 917 TTAAATCTTCTATAGC-TCGCCGTTCTCTAATGCCTCACAACCACCACCATGATCTCAGC 975
Query 721 -T--CTTTAGACCTCGAGGACCAGAAGATCAGGAGGATGAGACGTGCATTGGATTCCTCC 777
| || |||||| || || || ||||| || ||||||||||| || |||||||| ||
Sbjct 976 GTGGCTCAAGACCTAGAAGATCAAAAGATTAGAAGGATGAGACGAGCTTTGGATTCATCA 1035
Query 778 GATGTCGAGCTTGTGAAGCTAATGGTGATGGGAGAAGGACTCAATCTAGATGAGTCCCTA 837
|| || || || |||||||| ||||| |||||||||||||||||||| |||||||| ||
Sbjct 1036 GACGTGGAACTAGTGAAGCTGATGGTAATGGGAGAAGGACTCAATCTTGATGAGTCGTTA 1095
Query 838 GCTTTG-ATTTACGCCGTTGAGAAT-TGTAGTAGAGAGGTTGTGAAGGCACTT-CTTGAG 894
|| ||| ||| |||| ||||| || ||||||||||| ||||||||||| || ||||||
Sbjct 1096 GCATTGCATT-ACGCTGTTGA-AAGCTGTAGTAGAGAAGTTGTGAAGGCT-TTGCTTGAG 1152
Query 895 CTTGGAGCAGCCGATGTGAACTATCCCGCCGGTCCCACAGGGAAAAC-CGCTCTT-CACA 952
|||||||| ||||||||||| ||||| || ||||| |||||||||| | || || ||||
Sbjct 1153 CTTGGAGCTGCCGATGTGAATTATCCGGCGGGTCCGGCAGGGAAAACAC-CT-TTGCACA 1210
Query 953 TCGCGGCTGAAATGGTCTCTCCGGACATGGTGGCTGT-CTTACTT-GACCACCACGCTGA 1010
|||||||||| ||||||||||| |||||||||||||| || || |||||||| |||||
Sbjct 1211 TCGCGGCTGAGATGGTCTCTCCAGACATGGTGGCTGTTCTG--TTAGACCACCATGCTGA 1268
Query 1011 CCCAAACGTGCAG-ACTGT-GGATGGAATCACTCCTCTCGACATCCTTAGAACCCTAACG 1068
|| || ||| || || || || ||||||||| ||||| || ||||||||||| ||||
Sbjct 1269 TCCTAATGTG-AGGACAGTTGG-TGGAATCACGCCTCTTGATATCCTTAGAACATTAACT 1326
Query 1069 TCGGATTTTTTGTTCAAGGGGGC-GATTCCTGGATTGACTCATATTGAGCCCAATAAGCT 1127
|||||||| |||||||||||||| | |||||||||||||||| ||||| || ||||| ||
Sbjct 1327 TCGGATTTCTTGTTCAAGGGGGCAG-TTCCTGGATTGACTCACATTGAACCGAATAAACT 1385
Query 1128 CAGGCTTTGTCTCGAGCTGGTCCAGTCCGCGGCATTGGTTATATCACGCGAAGAAGGAAA 1187
|||||||| |||||||| || || ||||| ||| |||| ||||| || |||||||||||
Sbjct 1386 TAGGCTTTGCCTCGAGCTTGTTCAATCCGCTGCAATGGTGATATCTCGAGAAGAAGGAAA 1445
Query 1188 CAATACCAGTAACGACAACAA 1208
||||| || ||| | |||||
Sbjct 1446 CAATAGCAACAACCAAAACAA 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5