BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324226
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57160.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 145 2e-34
AT2G41420.1 | Symbols: | proline-rich family protein | chr2:17... 102 1e-21
> AT3G57160.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:21157610-21158816 REVERSE LENGTH=609
Length=609
Score = 145 bits (78), Expect = 2e-34
Identities = 135/162 (83%), Gaps = 5/162 (3%)
Strand=Plus/Plus
Query 7 CAACCTCCTGCTGTTGGTGTTCCTCCTTCTCAAGGTTATCCGGCGGAAGGACCACCCAAG 66
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 71 CAACCTCCTGCTGTTGGTGTTCCTCCTTCTCATGCTTATCCGGCGGAAGGACCACCCAAG 130
Query 67 GACGCTTATCCACC-CAAGGTCGACGCTTATCCACCTCCGGGACAACCCTATCCTCCGCA 125
|||||||||||||| | || | || || |||| | | ||| | || | ||||||||
Sbjct 131 GACGCTTATCCACCTCCGGGACAACCCT-ATCCTCAGCAAGGATATCC-T--CCTCCGCA 186
Query 126 AGGTTATCCTCCGCAGGGCTATCCTCAACAAGGTTATCCTCC 167
|| ||||||| || || ||||||| ||||||||||||||
Sbjct 187 GGGATATCCTCAACAAGGTTATCCTCCTCAAGGTTATCCTCC 228
Score = 124 bits (67), Expect = 3e-28
Identities = 88/97 (91%), Gaps = 6/97 (6%)
Strand=Plus/Plus
Query 76 CCACCCAAGGTCGACGCTTATCCACCTCCGGGACAACCCTATCCTCCGCAAGGTTATCCT 135
|||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 122 CCACCCAA-G--GACGCTTATCCACCTCCGGGACAACCCTATCCTCAGCAAGGATATCCT 178
Query 136 CC---GCAGGGCTATCCTCAACAAGGTTATCCTCCTC 169
|| |||||| |||||||||||||||||||||||||
Sbjct 179 CCTCCGCAGGGATATCCTCAACAAGGTTATCCTCCTC 215
> AT2G41420.1 | Symbols: | proline-rich family protein | chr2:17266477-17268024
REVERSE LENGTH=765
Length=765
Score = 102 bits (55), Expect = 1e-21
Identities = 129/162 (80%), Gaps = 15/162 (9%)
Strand=Plus/Plus
Query 115 TATCCTCCGCAAGGTTATCCTCCGCAGGGCTATCCT-CAAC--AAG-G--T---TATCCT 165
||||||| ||||||||||||| ||| || |||||| || | | | | | ||||||
Sbjct 290 TATCCTCAACAAGGTTATCCTCAGCAAGGATATCCTCCACCGTACGCGCCTCAATATCCT 349
Query 166 CCTCC-CCAACAACAACAGCAGCAGCATCA-CAGTCCTGG-TATGCTTGAAGGATGTCTT 222
|| || || || || ||||| || || | ||||||||| | | || ||||||||||||
Sbjct 350 CCACCACC-GCAGCATCAGCAACAACA-GAGCAGTCCTGGCT-TTCTAGAAGGATGTCTT 406
Query 223 GCTGCTCTGTGTTGTTGCTGTGTCTTGGACGCTTGCTTCTGA 264
||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 407 GCTGCTCTGTGTTGTTGCTGTCTCTTGGATGCTTGCTTCTGA 448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12064259760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5