BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324227
Length=2031
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57170.1 | Symbols: | N-acetylglucosaminyl transferase comp... 2641 0.0
> AT3G57170.1 | Symbols: | N-acetylglucosaminyl transferase component
family protein / Gpi1 family protein | chr3:21159407-21163184
REVERSE LENGTH=2405
Length=2405
Score = 2641 bits (1430), Expect = 0.0
Identities = 1604/1685 (95%), Gaps = 23/1685 (1%)
Strand=Plus/Plus
Query 363 GAGCATAGAATTATGGAACTCCATTCAAGTTCAAGATTGCATCATATACACTGGAATGGG 422
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 521 GAGCATAGAATTATGGAATTCCATTCAAGTTCTAGATTGCATCATATACACTGGAATGGG 580
Query 423 GAGATTGTATCTCAATGCGATGTCCACGTATGTCATAGTCTATGACACTCCAGTGTTTGG 482
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GATATTGTATCTCAATGCGATGTCCACGTATGTCATAGTCTATGACACTCCAGTGTTTGG 640
Query 483 TTCTCACCATTTCTCGTTAAGCTTTTGGAATTCTTCTCCTCAGACAAAAGCTCCTCTTAA 542
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 641 TTCTCACCATTTCTCGTTAAGCTTTTCGAATTCTTCTCCTCAGACAAAAGCTCCTCTTAA 700
Query 543 GAAACCCAAGTGGGTTGATGATCTTCACAACAGGAAACCTCTGAATGAAATGGAAACTGT 602
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 701 GAAACCCAAGTGGGTTGATGATCTTCACAATAGGAAACCTCTGAATGAAATGGAAACTGT 760
Query 603 GATTCTTTCCATAAATTGCGCCTCAGCTGCCAAGATTGCCTATAAGAAGATTTCCACGCA 662
||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 761 TATTCTTTCCTTAAATTGCGCCGCAGCTGCCAAGATTGCCTATAAGAAGATATCCACGCA 820
Query 663 GCTGGAGACTTCTTCTCAGAACTTTTCCATTTGTTACTTGATATCTTCTTTGACATGGCG 722
||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 821 GCTGGAGACTTCTTCCCAGAACTTTTCCATTAGTTACTTGATATCTTCTTTAACATGGCG 880
Query 723 GTTACTCGCCACAATTTTAGGCTCTATATCAAGTCTGTATTATAGCCTTGCCCAATTCTT 782
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 881 GTTACTCGCCACAATTTTAGGCTCTTTATCAAGTCTGTATTATAGCCTTGCCCAATTCTT 940
Query 783 CTATTTACTTTCAAGTTTTCCGATTTTCTCATGGGTGCACATCGCATCGAGGAGGGTACT 842
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 941 CTATTTACTTTCAAGTTTTCTGATTTTTTCATGGGTGCACATCGCATCGAGGAGGGTACT 1000
Query 843 CAAGAATACATGGATCAACTTCAGAATACGCAGTTGTCAGATCTTATATTGGCCAATCTT 902
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1001 CAAGAATACATGGATCAACTTCAGGATACGTAGTTGTCAGATCTTATATTGGCCAATCTT 1060
Query 903 CCTTGAAGAGAATGGTATGATGTCCATTTCCTGTGTGGAACATGCAGAGAAAGCTGCACT 962
||||||||||| || ||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 1061 CCTTGAAGAGATTGACATGATGTCCATATCCTGTGTGAAACATGCAGAGGAAGCTGCACT 1120
Query 963 GCAAAGACATTCTACATGGTCGGCCATGGCTGTTGATCTTGTTTTGGGGAATTTGATTGG 1022
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1121 GCAAAGACATTCTACATGGTCGGCCATGGCTGTTGATCTTGTTTTGGGGAACTTGATTGG 1180
Query 1023 TCTAGGTCTACTGTTTAACACCGAATCTGTCTGCTCATTTGTATTCGACTTTGCAAAGGA 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 TCTAGGTCTACTGTTTAACACCGAATCTGTCTGCTCATTTGTATTCGACTTTGCAAAGGA 1240
Query 1083 GTTTACGAATGGTATTTTGCGGTCTGGTAGTGTGTGGTTGATGGGAGTTCCAGCGGGTTT 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GTTTACGAATGGTATTTTGCGGTCTGGTAGTGTGTGGTTGATGGGAGTTCCAGCGGGTTT 1300
Query 1143 TAAGTTAAACACAGAATTGGCTGGAGTTTTAGGCATGGTATCTCTTAATGTAATCCAGAT 1202
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1301 TAAGTTAAATACAGAATTGGCTGGAGTTTTGGGCATGGTATCTCTTAATGTAATACAGAT 1360
Query 1203 ATGGTCTACTCTCTGGGTCTTCATGGCTTCTTTCATCTTTTATTTGATAAGAGTAATTGC 1262
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1361 ATGGTCTACTCTCTGGGTCTTCATGGCTTCTTTCATCTTTTGTTTGATAAGAGTAATTGC 1420
Query 1263 TATCCTTGGAATTACTTTTGGTGCCACAGTATCTGCCGCATTTGTCATAGATGTTATTAC 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1421 CATCCTTGGAATTACTTTTGGTGCCACAGTATCTGCCGCATTTGTCATAGATGTCATTAC 1480
Query 1323 TTTTGCAACACTTCATATAATGGCTCTTCACTGGGGAATCACACTTGTATATTCTCACCA 1382
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1481 TTTTGCAACACTTCATATAATGGCTCTTCACTGGGCAATCACACTTGTGTATTCTCACCA 1540
Query 1383 AATTCAAGCTTTAGCAGCTTTGTGGAGGCTTTTCAGAGGGCGAAAATTGAATCCTCTACG 1442
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 AATCCAAGCCTTAGCAGCTTTGTGGAGGCTTTTCAGAGGGCGAAAATTGAATCCTCTACG 1600
Query 1443 TCAAAGGATGGACAGCTATGGTTACACTGTGAAGCAACATGTAGTGGGATCTCTTCTGTT 1502
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 TCAAAGAATGGACAGCTATGGTTACACTGTGAAGCAACATGTAGTGGGATCTCTTCTGTT 1660
Query 1503 CACTCCTCTTCTGCTTCTCTTGCCAACAACATCAGTTTTCTACATCTTTTTCACCATTAC 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 CACTCCTCTTCTGCTTCTCTTGCCAACAACATCAGTTTTCTACATCTTTTTCACCATTAC 1720
Query 1563 GAGCACTACAATCAACTCCATATGTATGTTGATTGAATTTGCCATCTCCGTCATCCATGC 1622
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 GAGCACTACAATAAACTCCATATGTATGTTGATTGAATTTGCCATCTCCGTCATCCATGC 1780
Query 1623 AACACCATATGCAGAGGTTTTGATTTGGCTTGTCAGGCGTAAAAGATTCCCTTGTGGTGT 1682
||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1781 AACACCATATGCAGAGGTTATGATTTGGCTTGTTAGGCGTAAAAGATTCCCCTGTGGTGT 1840
Query 1683 TTGGTTTGAAATGGAACACTATAGAGAGCATATCCT-----CGAA-GATGC-----A-GA 1730
|||||||||||||||||||| | ||||||||||||| | || ||||| | ||
Sbjct 1841 TTGGTTTGAAATGGAACACTGTGGAGAGCATATCCTTAAATCCAATGATGCCTTCGAAGA 1900
Query 1731 CTCCAAAAGTCTACTAGAAGAACATGATACTCCTGA------T-CT--AATAGTTTCCAA 1781
|||||||||||||||||||||||| | ||||||||| | || ||| ||||||||
Sbjct 1901 CTCCAAAAGTCTACTAGAAGAACACGGTACTCCTGAGAAGAATTCTCTAATGGTTTCCAA 1960
Query 1782 CCTTCGCAGCAATTTTTTAACCTTAGGACAGATTCTTTTGCCTCACTATACAACAATATT 1841
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1961 TCTTCGCAGCAATTTTCTAACCTTAGGACAGATTCTTTTGCCTCACTATAAAACAATTTT 2020
Query 1842 TTCAGGAATATCAGCTTCTTCTCTGACAACATCAGCTCGGGGAGTCCTCAGTGGGAAAAG 1901
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2021 TTCAGGAATATCAGCTTCTTCTCTGACAACATCAGCTCGCGGAGTCCTCAGTGGGAAGAG 2080
Query 1902 AATGCCATCAAAACTGGGGCTTGATCTTCCTCCTCCAAGGCCATGGATGCACATGCCATT 1961
|||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 2081 AATGCCATCAAAACTGGGGCTTGATCTTCCTCCTCCGAGGCCATGGCTCCACATGCCATT 2140
Query 1962 GAGACAGTACTGGATCCTATGCCATAATTCCATCATCTCATCAGTGGCAAATGGTGAATT 2021
||||||||||||||| ||||||||||||||||||| ||||| |||||||||| ||| ||
Sbjct 2141 GAGACAGTACTGGATGCTATGCCATAATTCCATCAGCTCAT--GTGGCAAATGATGACTT 2198
Query 2022 CTCCA 2026
|||||
Sbjct 2199 CTCCA 2203
Score = 542 bits (293), Expect = 6e-153
Identities = 348/373 (93%), Gaps = 10/373 (3%)
Strand=Plus/Plus
Query 1 ATGAAGAGAAAATGTAGGATTTGGTTGCATAAGCAGCTCGCATCAACTGATGATTTGAGT 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 74 ATGAAGAGAAAATGTAGGATTTGGTTGCCTAAACAGCTCGCATCAACTGATGATTTGAGT 133
Query 61 CACAGTCTATTGTTTGGGTGGTTCGTTTGCCAGTCCTCTTCTTGTCTTGACGTTGTTGTG 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 134 CACAGTCTATTGTTTGGGTGGTTCGTTTGCCATTCCTCTTCTTGTCTTGACGTTGTTGTG 193
Query 121 GCCTTTATCTCTGATGAAAGCTCCTTGTCCAATGCCGGATCTAAGCTCCAAGACGTACTC 180
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 194 TCCTTCATCTCTGATGAGAGCTCCTTGTCCAATGCCGGATCTAAGCTCCAAGATGTACTC 253
Query 181 CGTGAAACAAATGAGAAGATGCCCTCAACTTTACGGGATAAGGCAGCGTTTACTCTCCTT 240
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 254 CGTGAAACAAATGAGAAGATGCCCTCAACTTTACGGGACAAGGCAGCATTTACACTCCTT 313
Query 241 GGTCGTTATGATACAAGCCGTAATGCTAATGGAAACGTATCAAAGATTATAACAGACAAA 300
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 314 GGTCGTTATGATATAAGCCGTAATGCTAATGGAAACGTATCAAAGATTATAAGAGACAAA 373
Query 301 GATATGTGCAGCAAGGCTGGAGCTTAT-T--G-C-----AAATATAGTGGCCTCAGCTGT 351
||||||| | ||||||||||||||||| | | | ||||||||||||||||| |||
Sbjct 374 GATATGTCCCGCAAGGCTGGAGCTTATGTTAGGCCTTGCAAATATAGTGGCCTCAGTTGT 433
Query 352 GGTTGTCA-AAGG 363
|||||||| ||||
Sbjct 434 GGTTGTCATAAGG 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100652092725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5