BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324229
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57190.1 | Symbols: | peptide chain release factor, putativ... 1825 0.0
> AT3G57190.1 | Symbols: | peptide chain release factor, putative
| chr3:21166403-21168376 FORWARD LENGTH=1464
Length=1464
Score = 1825 bits (988), Expect = 0.0
Identities = 1152/1231 (94%), Gaps = 11/1231 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCCAAGATTCCTGGTGGAGGCTGCTCATGGCGACGCTTTGACAGGAAGAGAACA 60
|||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 66 ATGGCGGCAAAGATTATTGGTGGATGCTGCTCATGGCGACGCTTTTACAGGAAGAGAACA 125
Query 61 CCATCTCGATTTCTGATATTCTCTGTTCGAGCCTCTAGTTCCATGGATGATATGGACACA 120
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 126 TCATCTCGATTTCTGATTTTCTCTGTTCGAGCCTCTAGTTCCATGGATGACATGGACACC 185
Query 121 GTCTACAAGCAATTGGGATTGTTTTCACTAAAGAAGAAGATTAAAGATGTTGTTCTTAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GTCTACAAGCAATTGGGATTGTTTTCACTAAAGAAGAAGATTAAAGATGTTGTTCTTAAG 245
Query 181 GCTGAGATGTTTGCACCGGATGCTCTTGAGCTTGAAGAAGAGCAATGGATAAAGCAAGAA 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 246 GCTGAGATGTTTGCACCGGATGCTCTTGAGCTTGAAGAAGAGCAGTGGATAAAGCAAGAA 305
Query 241 GAAACAATGCGTTACTATGATTTATGGGATGATCCAGCTAAATCTGATGAGATTCTTCTC 300
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 306 GAAACAATGCGTTACTTTGATTTATGGGATGATCCCGCTAAATCTGATGAGATTCTTCTC 365
Query 301 AAATTAGCTGATCGAGCAAAAACAGTTGATTCTCTCAAAGACCTCAAATACAAGGCAGAA 360
||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||| |||
Sbjct 366 AAATTAGCTGATCGAGCTAAAGCAGTCGATTCCCTCAAAGACCTCAAATACAAGGCTGAA 425
Query 361 GAAGCTAAGCTAATCATACAATTGGGTGAGATGGATGCTATAGATTACAGTCTCTTTGAG 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GAAGCTAAGCTGATCATACAATTGGGTGAGATGGATGCTATAGATTACAGTCTCTTTGAG 485
Query 421 CAAGCTTACGATTCATCGCTCGATGTAAGCAGATCTTTGCATCACTATGAGATGTCTAAG 480
||||| || |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 486 CAAGCCTATGATTCATCACTCGATGTAAGTAGATCGTTGCATCACTATGAGATGTCTAAG 545
Query 481 CTTCTTAGGGATCAATATGACGCTGAAGGCGCTTGTATGATTATTAAATCTGGATCTCAA 540
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 546 CTTCTTAGGGATCAATATGACGCTGAAGGCGCTTGTATGATTATCAAATCTGGATCTCCA 605
Query 541 GACGCAAAATCTCAGGATTTGCAGATATGGACAGAGCAAGTTGTAAGTATGTATATCAAA 600
| ||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 606 GGCGCAAAA--TC------T-CAGATATGGACAGAGCAAGTTGTAAGTATGTATATCAAA 656
Query 601 TGGGCAGAAAAGCTAGGCCAAAACGCTAGAGTGGCTGAGAAATGTAGCTTCTTGAGCAAT 660
|||||||||| ||||||||||||||| | ||||||||||||||||| || ||||| |||
Sbjct 657 TGGGCAGAAAGGCTAGGCCAAAACGCGCGGGTGGCTGAGAAATGTAGTTTATTGAGTAAT 716
Query 661 AAAAGTGGTGTAAATTCAGCCACAATAGAGTTTGAATTCGACTTTGCTTATGGTTATCTC 720
|||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 717 AAAAGTGGCGTAAGTTCAGCCACGATAGAGTTTGAATTCGAGTTTGCTTATGGTTATCTC 776
Query 721 TTAGGTGAGCGAGGCGTGCACCGCCTTATCATAAGTTCCACTTCTAGTGAGGAATGTTCA 780
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 777 TTAGGTGAGCGAGGTGTGCACCGCCTTATCATAAGTTCCACTTCTAATGAGGAATGTTCA 836
Query 781 GCGACTGTTGATATCATACCGCTATTCTTGAGAGCATCTCCTGATTTTGAAGTAAAGGAA 840
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 837 GCGACTGTTGATATCATACCACTATTCTTGAGAGCATCTCCTGATTTTGAAGTAAAGGAA 896
Query 841 GATGATTTGATTGTTTCGTATCCTGCAAAAGAGAACCATAAAATAGCTGAGAATATGGTT 900
| |||||||||||| |||||||||||||||||| | || |||||||||||||||||||||
Sbjct 897 GGTGATTTGATTGTATCGTATCCTGCAAAAGAGGATCACAAAATAGCTGAGAATATGGTT 956
Query 901 AGTATTCAACATATACCGAGTGGAATAACTGTTGAATCGTCAGGAGAAAGAAACCGGTTT 960
|||| || ||||| ||||||||| |||| | |||| |||||||||||||||||||||
Sbjct 957 TGTATCCACCATATTCCGAGTGGAGTAACACTACAATCTTCAGGAGAAAGAAACCGGTTT 1016
Query 961 GCAAACAGGATCAAAGCGCTAAACCGATTAAAGGCGAAGCTGCTTGTGATAGCAAAAGAG 1020
||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||
Sbjct 1017 GCAAACAGGATCAAAGCTCTAAACCGGTTGAAGGCGAAGCTACTTGTGATAGCAAAAGAG 1076
Query 1021 CAGAAA-ATTTCGGATGTAAATAAAATAAACAGCAAGAACATTTTGGAACCATGGGAAGA 1079
|| ||| ||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1077 CA-AAAGGTTTCGGATGTAAATAAAATCGACAGCAAGAACATTTTGGAACCGCGGGAAGA 1135
Query 1080 AACCAGGAGATATGTCTCTAAGGGTCAAAAGATGGTGGTTGATAGAAAAACCGGTTTAGA 1139
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1136 AACCAGGAGTTATGTCTCTAAGGGTCACAAGATGGTGGTTGATAGAAAAACCGGTTTAGA 1195
Query 1140 GATTCTGGACCTGAAATCGGTCTTGGATGGGAACATTGGACCACTCCTTGGAGCTCATAT 1199
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1196 GATTCTGGACCTGAAATCGGTCTTGGATGGAAACATTGGACCACTCCTTGGAGCTCATAT 1255
Query 1200 TAGTATGAGAAGATCAATTGATGCGATTTAG 1230
||| |||||||||||||||||||||||||||
Sbjct 1256 TAGCATGAGAAGATCAATTGATGCGATTTAG 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5