BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324236
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57280.1 | Symbols: | Transmembrane proteins 14C | chr3:211... 750 0.0
> AT3G57280.1 | Symbols: | Transmembrane proteins 14C | chr3:21193780-21195716
FORWARD LENGTH=1030
Length=1030
Score = 750 bits (406), Expect = 0.0
Identities = 468/498 (94%), Gaps = 4/498 (1%)
Strand=Plus/Plus
Query 1 ATGGCTACACAAATCTCTCAGCTTGCTTGTTTCTCATCCACCAATC-CTCAATTTCACTT 59
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 181 ATGGCTTCACAAATCTCTCAGCTTGCTTGTTTCTCATCCACCAATCGC-CAATTTCACTT 239
Query 60 CCAGAGCCGATCATTTACATGCCCTAGGATTCGTCCCCAGTCTTTTGTAGTTAGAAGCGT 119
||| |||||||| ||| ||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 240 CCAAAGCCGATCGTTTCCATGCCCTATGATTCGTCCCCAGTCTTTTGTAGTTAAAAGTGT 299
Query 120 TGATGGGAATAGCTCTGAAACACCGGCTTCTCTAAGCTATACAGCTGAGGTTTCAAAACC 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 TGATGGGAATAGCTCTGAAACACCAGCTTCTCTAAGCTATACAGCTGAGGTTTCAAAACC 359
Query 180 TATTGTTGAGAAAACATCGAAACCGTATTCCACTGTGGATGAAACTGCTACTGATAAAGA 239
| |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 360 TGTTGTTGAGAAAACATCCAAACCGTATTCCACTGTTGATGAAACTGCTACCAATAAAGA 419
Query 240 TATTATCACAGAGCCAGTAGAAGAACATGTTGCCACACAACCAATAAGAGCAGCAAAGAT 299
| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 420 GAGCATCACAGAGCCAGTAGAGGAAGATGTTGCCACACAACCAATAAGAGCAGCAAAGAT 479
Query 300 CCACGATTTCTGTTTTGGCATTCCTTATGGTGGTCTCG-TGATCAGTGGAGGGCTTCTTG 358
|||||| |||||||| |||||||||||||||||||||| || | ||||||||||||||||
Sbjct 480 CCACGACTTCTGTTTCGGCATTCCTTATGGTGGTCTCGTTG-TGAGTGGAGGGCTTCTTG 538
Query 359 GATTTGCGTTTTCACGAAATCTTACGAGCTTAAGTACTGGTGTCCTCTATGGTGGTGGCC 418
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 539 GTTTTGCGTTTTCACGAAATCTTACAAGTTTAAGTACTGGTGTCCTCTATGGTGGTGGCC 598
Query 419 TTCTAGCCCTTAGTACATTGAGCTTAAAGATTTGGCGACAGGGAAAATCTAGTTTCCCTT 478
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 599 TTCTAGCCCTTAGTACACTGAGCTTAAAGATTTGGCGAGAGGGAAAATCTAGTTTCCCTT 658
Query 479 ATATACTAGGACAAGCAG 496
||||||||||||||||||
Sbjct 659 ATATACTAGGACAAGCAG 676
Score = 327 bits (177), Expect = 6e-89
Identities = 185/189 (98%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 532 GCAGTTCTGTCAGCTGTCGTCTTCTGGAAGAACTTCACAGCTTATTCGATGACTAAGAAG 591
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GCAGTGCTTTCAGCTGTCGTCTTCTGGAAGAACTTCACAGCTTATTCGATGACTAAGAAG 732
Query 592 CTGTTTCCGGCCGGGCTTTTTGCTGTCATCAGTGCTTGCATGTTGTGTTTCTATTCATAT 651
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CTGTTTCCGGCCGGGGTTTTTGCTGTCATCAGTGCTTGCATGTTGTGTTTCTATTCATAT 792
Query 652 GTGGTGCTCTCTGGAGGAAACCCACCTCCAAAGAAATTGAAACCATCTGCTACTAGTCCT 711
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 793 GTGGTGCTCTCTGGAGGAAACCCACCTCCAAAGAAATTGAAACCATCTGCGACTAGTCCT 852
Query 712 TCATACTGA 720
|||||||||
Sbjct 853 TCATACTGA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34912732165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5