BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324269
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57680.1 | Symbols: | Peptidase S41 family protein | chr3:2... 2361 0.0
> AT3G57680.1 | Symbols: | Peptidase S41 family protein | chr3:21381054-21383629
FORWARD LENGTH=1560
Length=1560
Score = 2361 bits (1278), Expect = 0.0
Identities = 1472/1565 (94%), Gaps = 16/1565 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAAAATTGTAACCCTAAATCATGACCTACCTCTGTTACACTTGCCGAATTCTCGG 60
||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAAAAAGTTGTAACCCTAAATCATGATCTACCTCTGTTACACTTCCCGAATTCTCGG 60
Query 61 AAACCCTTTTCGATTCCATCTCCGATTCTTC-GATTTTCAAGCTTCAATCTTCGTAAGAA 119
||||||||||||||||||||||||||||||| || |||| |||||||| | || ||||||
Sbjct 61 AAACCCTTTTCGATTCCATCTCCGATTCTTCGGA-TTTCGAGCTTCAAGCGTCATAAGAA 119
Query 120 ACG-TCTTTGTCTTGCATCGTCTTCCGAAAC-AGAG----A-CCA-AGACTGTGACTGTT 171
||| || ||||||||||||||||| || | || | | || |||| ||| |||
Sbjct 120 ACGTTC-TTGTCTTGCATCGTCTT-CGCGTCTAGGGTTCTATACAGAGACCAAGACCGTT 177
Query 172 TCGGAGAGCCATGGTGTGATAGTTGACAACAGTACCGTTGGAAGAAGTTTGCTTGGTTTA 231
|| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 178 TCAGAGAGCCATGGTGTGATAGTTGACAACAGTACCATCGGAAGAAGATTGCTTGGTTTA 237
Query 232 GCCGCCGCCGTTGCAGTAGCTGTTTCTTCGTCGATCTTTTGCGATTCTTCGGCACTAGCT 291
||||| |||||| ||||||| ||||||| |||||||||||| ||||| |||||||||||
Sbjct 238 GCCGCAGCCGTTTCAGTAGCGGTTTCTTTGTCGATCTTTTGTGATTCCCCGGCACTAGCT 297
Query 292 GAGTCTCTGACGATCGCTTTCCCTGTTTCACGTGCTCGTGAGGTTACTACAGTACAGAGA 351
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAGTCTCTAACGATCGCTTTCCCTGTTTCACGTGCTCGTGAGGTTACTACAGTACAGAGA 357
Query 352 ACTCTTGTGGAAGCTTGGGGTTTAATTAGTGAAACATTCGTTGATCCAACTTTTAATCAT 411
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 358 ACTCTTGTGGAAGCTTGGGGTTTGATTAGAGAAACATTTGTTGATCCAACTTTTAATCAT 417
Query 412 CAGGATTGGGATTTTAAGTTGCAGCAGACAATGGTGGAAATGCTTCCTCTAAGATCAGCA 471
|| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 418 CAAGATTGGGATTTTAAGTTGCAACAGACGATGGTGGAAATGTTTCCTCTAAGATCAGCA 477
Query 472 GATGCTGCTTATGGAAAGCTCAAAGCTATGCTCTCTACGCTTGGTGATCCCTTTACTCGA 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GATGCTGCTTATGGAAAGCTCAAAGCTATGCTCTCTACGCTTGGTGATCCCTTTACTCGA 537
Query 532 CTCATTAGCCCTAAGGAGTACCAAAGTTTCAGAATTGGCAGCGATGGAAATCTCCAAGGT 591
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTCATTACCCCAAAGGAGTACCAAAGTTTCAGAATTGGCAGCGATGGAAATCTCCAAGGT 597
Query 592 GTTGGCCTTTTCATAAACTCAGAACCAAGAACAGGTCACCTGGTTGTTATGTCTTGCATA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 598 GTTGGCCTTTTCATAAACTCAGAACCAAGAACAGGTCACCTGGTTGTTATGTCTTGCGTA 657
Query 652 GAAGGTAGCCCGGCAGCTCGTGCTGGTATACATGAAGGCGAGGAATTAGTCGAGATAAAT 711
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 GAAGGTAGCCCGGCAGATCGTGCTGGTATACATGAAGGCGAGGAGTTAGTCGAGATAAAT 717
Query 712 GGTGAGAAATTGGATGGTGTTGATAGTGAAGCAGCAGCACAGAAGCTGAGAGGCCGAGTT 771
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GGTGAGAAATTAGATGATGTTGATAGTGAAGCAGCAGCACAGAAGCTGAGAGGCCGAGTT 777
Query 772 GGAACATTTGTTACCATAAAACTTAAAAGTGTGAATGGATCAAGGACAGATTCTGGTATC 831
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 778 GGAACATTTGTTACCATAAAACTTAAAAATGTGAATGGATCAGGGACAGATTCTGGTATT 837
Query 832 AGAGAGGTCAAGTTACCTCGAGATTACATTAAGTTATCTCCAATATCCAGTGCTATAATC 891
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 838 AGAGAGGTCAAGTTACCTCGAGATTACATTAAGCTATCTCCAATATCCAGTGCTATAATC 897
Query 892 CCACATACAACACCTGATGGACGTTTAGCAAAGACGGGTTATGTCAAACTCACAGCTTTT 951
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 898 CCACATACAACACCTGATGGACGTTTAGCGAAGACAGGTTATGTCAAACTCACAGCGTTT 957
Query 952 TCTCAGACTGCAGCGTCCGATATGGAAAATGCGGTACACGAGATGGAGAATCAGGATGTT 1011
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 TCACAGACTGCAGCGTCCGATATGGAAAATGCGGTGCACGAGATGGAGAATCAGGATGTT 1017
Query 1012 CAGTCATATATTCTAGATCTAAGGAACAATCCGGGAGGTCTGGTTAAAGCTGGCCTTGAT 1071
|||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1018 CAGTCATACATTCTAGACCTAAGGAACAATCCGGGAGGTCTGGTTAGAGCTGGTCTTGAT 1077
Query 1072 GTTGCACAACTATGGCTTGACGGAGATGAGACTCTTGTGTATACAATCGATCGAGAAGGG 1131
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GTTGCACAATTATGGCTTGACGGAGATGAGACTCTTGTGTATACAATCGATCGAGAAGGG 1137
Query 1132 GTTACATCACCGATAAACATGATTAATGGACACGCTGTGACACACGATCCACTTGTTGTG 1191
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1138 GTTACATCACCGATCAACATGATCAATGGACACGCTGTGACACATGATCCACTTGTTGTG 1197
Query 1192 CTTGTGAATGAAGGAAGTGCGAGTGCAAGTGAAATTTTGGCAGGTGCTTTACATGATAAT 1251
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1198 CTTGTGAATGAAGGAAGTGCTAGTGCAAGTGAAATTTTGGCAGGTGCTTTACACGATAAT 1257
Query 1252 GGTCGGGCTATACTTGTCGGTAACCGGACATTTGGGAAAGGGAAAATCCAGAGTGTAACG 1311
||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1258 GGTCGAGCTATACTTGTCGGTAACCGGACATTTGGGAAAGGGAAAATTCAAAGCATAACA 1317
Query 1312 GAACTAAACGATGGGTCGGCTTTGTTTGTGACGGTGGCTAAGTATTTGTCTCCGTCTCTA 1371
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1318 GAGCTAAACGATGGGTCGGCTTTGTTTGTGACGGTGGCTAAGTATTTGTCTCCGTCTTTA 1377
Query 1372 CACGAAATTGATCAAGTAGGGATTGCACCTGATGTACAGTGTACCAC-GGATATGATCGA 1430
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1378 CACGAAATTGATCAAGTAGGGATTGCACCTGATGTACAGTGTACCACAGG-TATGATCGA 1436
Query 1431 TTCTTTGACCGGTGAGACACTTAAGAAGATGAACAGTTCGGTTCCATTGCTTGATA-CAG 1489
||||||||||| ||||| | || ||||||||||||||||||||||||||||||| | |||
Sbjct 1437 TTCTTTGACCGCTGAGATAGTTGAGAAGATGAACAGTTCGGTTCCATTGCTTGA-AGCAG 1495
Query 1490 ACTCATGTGTTGTGGTCGCTGAGCACGAACTTGAGACTCTACGATCCAATGGAACAGCTT 1549
||||||||||| ||||||||||||||||||||||| ||| |||||| |||||||||||||
Sbjct 1496 ACTCATGTGTTATGGTCGCTGAGCACGAACTTGAGGCTCGACGATCTAATGGAACAGCTT 1555
Query 1550 CTTGA 1554
|||||
Sbjct 1556 CTTGA 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76706432760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5