BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324272
Length=1770
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57790.1 | Symbols: | Pectin lyase-like superfamily protein... 2082 0.0
AT3G57785.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 545 4e-154
AT2G42310.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 311 2e-83
> AT3G57790.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:21405387-21407624 REVERSE LENGTH=1767
Length=1767
Score = 2082 bits (1127), Expect = 0.0
Identities = 1306/1392 (94%), Gaps = 13/1392 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGCATATTATTGATACTATTATTCTTCTCTCTCGTCCAATCACGTTC-GTACAC 59
|||||||||||||||||| ||||||||||||| ||||| |||||||||||||| | ||||
Sbjct 298 ATGGGAAGCATATTATTGTTACTATTATTCTTTTCTCTGGTCCAATCACGTTCAG-ACAC 356
Query 60 GTCATATTCGAAAATCCAACTTCCCGGCGATTCTCTGGCTCTTTCCGTTACCGATTTCGG 119
||||||||| ||||| ||||||||||||||||||||| | || |||||||||||||||||
Sbjct 357 GTCATATTCAAAAATTCAACTTCCCGGCGATTCTCTGACCCTCTCCGTTACCGATTTCGG 416
Query 120 CGCTACCGGCGATGGTATCAACTACGATACTTCTGCGGTACAGTCCACCATTGACGCCTG 179
|||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 417 TGCTACCGGCGATGGTATCAACTACGATACTTCTGCGATTCAGTCAACCATTGACGCCTG 476
Query 180 CAATCGTCACTACACATCGTCTTCTTCCATCTGCCGCGTCACTTTCCCTTCCGGCAACTA 239
|||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 477 CAATCGTCACTACACATCTTTTTCTTCCATCTGCCGCGTCGTTTTCCCTTCCGGCAACTA 536
Query 240 TTTGACAGCTAAGCTCCATCTCCGATCTGGTGTTGTTCTCGATGTGACGGAGAACGCTGT 299
|||||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct 537 TTTGACCGCTAAGCTCCATCTCCGATCTGGCGTCATTCTCGATGTGACGGAGAACGCCGT 596
Query 300 GCTTCTCGGGGGACCGAGAATCGAGGACTATTATCCGGCGGAGACTTCTTCGGATTGGTA 359
||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 597 GCTTCTCGGTGGACCGAGAATCGAGGATTATTATCCGGCGGAGACTTCGTCGGATTGGTA 656
Query 360 CGTGGTGGTGGCGAACAACGCGACGGACGTTGGAATTACCGGCGGAGGAGCGATTGATGG 419
||||||||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 657 CGTGGTGGTGGCGAATAACGCTACGGATGTTGGAATCACTGGCGGAGGAGCGATTGATGG 716
Query 420 CCAGGGATCGAAGTTCGTGGTCAGATTCGACGAGAAGAAGAACGTGATGGTGAGCTGGAA 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CCAAGGATCGAAGTTCGTGGTCAGATTCGACGAGAAGAAGAACGTGATGGTGAGCTGGAA 776
Query 480 TCAAACCGGAGCTTGCTTGGGTGATGAGTGTAGACCTAGACTTGTTGGATTCGTTGATTC 539
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 777 CCAAACCGGAGCTTGCTTGGGTGATGAGTGTAGACCCAGGCTTGTTGGATTCGTTGATTC 836
Query 540 TAGAAACGTTGAGATCTGGAACATCACATTACGAGAGCCTGCGTATTGGTGCTTGCACAT 599
|| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 837 TATAAACGTTGAGATCTGGAACATCACACTACGAGAGCCTGCGTATTGGTGTTTGCACAT 896
Query 600 TGTGAGGTGTGAGAACACATCAGTCCATGATGTATCGATCCTTGGGGACTTCAATACTCC 659
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGTGAGATGTGAGAACACATCAGTCCATGATGTATCGATCCTTGGGGACTTCAATACTCC 956
Query 660 AAATAACGATGGAATCGACATTGAGGACTCAAACAACACTGTTATAACTCGGTGTCACAT 719
|||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct 957 AAATAACGATGGAATCGACATTGAAGATTCCAACAACACTGTTATAACTCGGTGTCATAT 1016
Query 720 TGACACAGGAGATGATGCAATCTGTCCCAAGACTTATACTGGTCCACTTTACAACTTAAC 779
|| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1017 CGATACTGGAGATGATGCAATCTGTCCCAAGACTTACACTGGTCCACTTTACAACTTAAC 1076
Query 780 CGCTACAGACTGTTGGATCCGAACCAAATCCTCAGCCATTAAACTCGGTAGCGCGAGCTG 839
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1077 CGCTACAGACTGTTGGATCCGGACCAAATCCTCAGCCATTAAACTCGGTAGTGCGAGCTG 1136
Query 840 GTTCGACTTCAAAGGTCTTGTCTTTGATAACATCACTATTTTTGAATCTCACAGAGGCCT 899
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1137 GTTTGATTTCAAAGGTCTTGTCTTTGATAACATCACTATTTTTGAATCTCACAGAGGACT 1196
Query 900 TGGCATGCAAATACGCGATGGAGGAAATGTGAGTGACATTACATTTTCAAACATAAACAT 959
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1197 TGGCATGCAAATACGCGATGGAGGAAATGTGAGTGACGTTACATTTTCAAACATAAACAT 1256
Query 960 TAGTACAAGATACTACGATCCTTCTTGGTGGGGACGAGCAGAACCAATCTATATAACAAC 1019
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1257 TAGTACAAGATACTACGATCCTTCTTGGTGGGGAAGAGCAGAACCAATCTATATAACAAC 1316
Query 1020 TTGCCCGCGTGACTCATCTGCAAAGGAAGGATCAATCTCGAATCTCCTATTTGTAAATAT 1079
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 1317 TTGCCCTCGTGACTCATCTGCAAAGGAAGGCTCAATCTCGAATCTCCTATTCGTAAACAT 1376
Query 1080 AACAATCAATTCCGAAAACGGAGTCTTTTTATCAGGCTCACCAAATGGACTACTCTCAGA 1139
||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1377 AACAATCGATTCCGAAAACGGAGTCTTTTTATCAGGTTCACCAAACGGACTACTCTCAGA 1436
Query 1140 TATAAAGTTCAAAAACATGAACCTTACTGTCAGAAGATGGAGTAATTATAGTGCAGGGCT 1199
|||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1437 TATAAAGTTCAAGAACATGAACCTTACTTTCAGAAGATGGAGTAATTACAGTGCAGGGCT 1496
Query 1200 TGTGGATTATAGACCTGGATGTCGAGGTCTCGTGAACCATAGCGCCACGGCTGGGATCAT 1259
|||||| |||||||||||||||| |||||| ||||||||||| |||||| |||| |||||
Sbjct 1497 TGTGGACTATAGACCTGGATGTCAAGGTCTAGTGAACCATAGAGCCACGTCTGGAATCAT 1556
Query 1260 AATGGAACATGTGAACGGGTT-CAGCATTGAGAATGTTGACCTGAAATGGTCAGATGATC 1318
||||| |||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 1557 TATGGAGCATGTGAACGGGTTTC-GCGTTGAGAATGTTGACCTGAAATGGTCAGATGATG 1615
Query 1319 -TGAAT-TG--TGC-G-T-GGAATGTTCCTCTCGAATTTAGACCTTCCACCGTGAATAAT 1371
||| | || ||| | | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1616 ATGA-TGTGAATGCTGCTTGGAATGTTCCTCTCGAATTTAGACCTTCCACTGTGAATAAT 1674
Query 1372 GTCTCGTT-GTT 1382
|||||||| |||
Sbjct 1675 GTCTCGTTTGTT 1686
> AT3G57785.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G42310.1);
Has 121 Blast hits to 121 proteins in 51 species: Archae -
0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:21404574-21405217
REVERSE LENGTH=644
Length=644
Score = 545 bits (295), Expect = 4e-154
Identities = 343/367 (93%), Gaps = 0/367 (0%)
Strand=Plus/Plus
Query 1404 GAGTGAAATCGGAATCACAGAAATGGCGTCGACGAAGCCATTGATCGTCGCAGCGAAGAC 1463
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 17 GAGTGAAATCGGAATCACAAAAATGGCGTCGACGAAGCCATTGATTGTCGCAGCGAAGAC 76
Query 1464 GCTCCGAAACCGGATCCATTTCCGATCAGGATCCACATCTGCTGGTCCAAGCCGGTGGGC 1523
|||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||
Sbjct 77 GCTCCGAAACCGGATCCACTTCCGATCTGGATCCACATCTACTGGTCCAAGCCGGTGGGC 136
Query 1524 AACGCCGGGTCACGAGGAACGACCCAAAGGATATTTCATGAACCGGACTCCGCCGCCGCC 1583
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 137 GACACCGGGTCACGAAGAACGACCCAAAGGATATTTCATGAACCGGACTCCGCCGCCTCC 196
Query 1584 GGGACAGTCGCGCAAGTGGGAAGATTGGGAGCTTCCTTGTTACATCACAAGCTTTCTCAC 1643
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 197 AGGACAGTCGCGCAAGTGGGAAGATTGGGAGCTTCCATGTTACATCACAAGCTTCCTCAC 256
Query 1644 GATTGTCATCCTCGGTGTGGGTCTCAATGCCAAACCCGATCTTTCAATCGAGACCTGGGC 1703
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 257 GATTGTAATCCTCGGAGTGGGTCTCAATGCCAAACCTGATCTTTCAATCGAGACCTGGGC 316
Query 1704 TCACCAGAAAGCTCTCGAGCGCCTCGAAATGGAGAAACTTGCGTCTGTCGGGGATTCTTC 1763
||||||||||||||| ||||||||||| |||||||| ||||| |||| ||| ||||| ||
Sbjct 317 TCACCAGAAAGCTCTTGAGCGCCTCGAGATGGAGAAGCTTGCATCTGCCGGAGATTCATC 376
Query 1764 CGATTAA 1770
| ||||
Sbjct 377 TGGTTAA 383
> AT2G42310.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G57785.1);
Has 115 Blast hits to 115 proteins in 48 species: Archae -
0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17625212-17625889
FORWARD LENGTH=678
Length=678
Score = 311 bits (168), Expect = 2e-83
Identities = 291/350 (83%), Gaps = 10/350 (3%)
Strand=Plus/Plus
Query 1426 ATGGCGTCGACGAAG-CCATTGATCGTCGCAGCGAAGACGCTCCGAAACCGGATCCATT- 1483
||| |||||||| || || |||| |||||||||||||||||| ||||| ||||| | ||
Sbjct 40 ATGCCGTCGACGCAGTCC-TTGACCGTCGCAGCGAAGACGCTACGAAATCGGAT-C-TTC 96
Query 1484 TC-CGATCAGGATCCACATCTGCTGGTCCAAGCCGGTGGGCAACGCCGGGTCACGAGGAA 1542
|| | || ||||| ||||| || ||||| || |||||||| ||||| |||||||||||
Sbjct 97 TCTAGGTCTGGATCTACATCCGCCGGTCCGAGTCGGTGGGCGACGCCAGGTCACGAGGAG 156
Query 1543 CGACCCAAAGGATA-TTTCATGAACCGGACTCCGCCGCCGCCGGGACAGTCGCGCAAGTG 1601
||||| || || || ||| |||||||| ||||| ||| | || ||||||||||| || ||
Sbjct 157 CGACCTAAGGGTTACTTT-ATGAACCGTACTCCTCCGGCACCAGGACAGTCGCGAAAATG 215
Query 1602 GGAAGATTGGGAGCTTCCTTGTTACATCACAAGCTTTCTCACGATTGTCATCCTCGGTGT 1661
|||||||||||||||||||||||||||||| ||||| || || ||||| |||||||| ||
Sbjct 216 GGAAGATTGGGAGCTTCCTTGTTACATCACCAGCTTCCTTACAATTGTTATCCTCGGCGT 275
Query 1662 GGGTCTCAATGCCAAACCCGATCTTTCAATCGAGACCTGGGCTCACCAGAAAGCTCTCGA 1721
|| |||||||||||||| ||||||||||||||||| |||||||| ||||||||| | ||
Sbjct 276 TGGACTCAATGCCAAACCTGATCTTTCAATCGAGACTTGGGCTCATCAGAAAGCTTTAGA 335
Query 1722 GCGCCTCGAAATGGAGAAACTTGCGTCTGTCGGG-GATTCTTCCGATTAA 1770
||| || || |||||||| || ||| | | | || ||||| || ||||||
Sbjct 336 GCGTCTTGAGATGGAGAAGCTCGCGACCG-CTGGAGATTCATCTGATTAA 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87549750480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5