BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324277
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57860.1 | Symbols: UVI4-LIKE, OSD1 | UV-B-insensitive 4-lik... 987 0.0
> AT3G57860.1 | Symbols: UVI4-LIKE, OSD1 | UV-B-insensitive 4-like
| chr3:21426314-21428253 FORWARD LENGTH=1279
Length=1279
Score = 987 bits (534), Expect = 0.0
Identities = 683/752 (91%), Gaps = 22/752 (3%)
Strand=Plus/Plus
Query 1 ATGCCAGAAGCAAGAGACCGAATCGAGAGGCCTGTGGATTATC-CGGCTATATTTGTCAA 59
||||||||||||||||| |||| |||||||||||||||||| | || ||||||||| |||
Sbjct 116 ATGCCAGAAGCAAGAGATCGAACCGAGAGGCCTGTGGATTA-CTCGACTATATTTGCCAA 174
Query 60 CAGACGCAGTA-ACGGTGTGTTACTTGACGAGCCAGATTCACGGCTTAGTTTAATTGAAT 118
| |||| || | | ||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 175 CCGACGGAG-ACATGGTATTTTACTTGACGAGCCAGATTCACGGCTTAGTTTGATTGAAT 233
Query 119 CTCCGGTGAATCCAGAAACTGGGTCAATGGGACGAGGATCTTTGGTTGGAACAGGCGGGC 178
|||||||||||||||| | |||||| | | |||| |||||| |||||||
Sbjct 234 CTCCGGTGAATCCAGATATTGGGTC--T---------A---TTGG-TGGAACGGGCGGGC 278
Query 179 TTGTGAGAGGCAATTTCAGTACATGGAGGCCTGGTAATGGTAGAGGTGGTCACAGTCCAT 238
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 279 TTGTGAGAGGCAATTTCACTACATGGAGGCCTGGTAATGGCAGAGGTGGTCACACTCCAT 338
Query 239 TTAGATTGTCACAGGGAAGAGAGAATAATATGCCCATGGTGTCTGCTAGGCGTGTAAGAG 298
|||||||| |||||||||||||| ||||||||||| ||| | |||||||||| |||||
Sbjct 339 TTAGATTGCCACAGGGAAGAGAG---AATATGCCCATAGTGACCGCTAGGCGTGGAAGAG 395
Query 299 GTCCTAGTTTGTTGCCTTCTTGGTATCCTAGAACACCTCTACGTGATATAACTCATATTA 358
|| | |||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 396 GTGGTGGTTTGTTGCCTTCTTGGTATCCAAGAACACCTCTACGCGACATAACTCATATTG 455
Query 359 TGCGGGCTATTGAGAGAAGAAGAGGAGCTGGGATTGGAAGAGACGATGGCCGAGATATTG 418
||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||
Sbjct 456 TGCGGGCTATTGAGAGAAGAAGAGGAGCTGGGACTGGAGGAGACGATGGCCGAGTTATTG 515
Query 419 AGATCCCAACTCAACAACAAGTTGGTGTTCTTGAATCTCCAGTACCACTGTCAGGAGAAC 478
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 AGATCCCAACTCATCGACAAGTTGGTGTTCTTGAATCTCCAGTACCACTGTCAGGAGAAC 575
Query 479 ACAAATGCTCAATTGTGACTCCTGGTCCATCTGTGGGATTCAAGCGTAGTTGCCCACCAT 538
|||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 576 ACAAATGCTCGATGGTCACTCCTGGACCATCTGTGGGATTCAAGCGTAGTTGCCCACCAT 635
Query 539 CAACTGCTAAAGTCCATAAGATGTTGCTTGACATCACTAAAGAGATAGCTGAGGAAGAAG 598
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 636 CAACTGCTAAAGTTCAAAAGATGTTACTTGACATCACTAAAGAGATAGCTGAGGAAGAAG 695
Query 599 CAGGCTTCATCACACCCGAGAAGAAGCTACTCAATTCTATTGACAAAGTTGAGAAAATTG 658
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 CTGGCTTCATCACACCCGAGAAGAAGCTACTCAATTCTATTGACAAAGTTGAGAAAATTG 755
Query 659 TGATGGCCGAGATCCAGAAATTGAAGAGCACTCCTCATGCTAAAAGGGAAGAGCGGGAGA 718
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 756 TGATGGCGGAGATCCAGAAGTTGAAGAGCACTCCTCAAGCTAAAAGGGAAGAGCGGGAGA 815
Query 719 AGAGGGTACGGACTTTAATGTCAATGCGATGA 750
||||||| |||||||||||| | |||||||||
Sbjct 816 AGAGGGTGCGGACTTTAATGACTATGCGATGA 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5