BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324296
Length=333
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58090.1 | Symbols: | Disease resistance-responsive (dirige... 438 1e-122
AT1G65870.1 | Symbols: | Disease resistance-responsive (dirige... 392 1e-108
> AT3G58090.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr3:21512319-21514281 REVERSE
LENGTH=1044
Length=1044
Score = 438 bits (237), Expect = 1e-122
Identities = 293/321 (91%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 13 GTTGACGACATATTGACGGTGGGGCCTGAAATTACCTCAGAGGAAGTTGGGAGAGCCCAA 72
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 564 GTTGACGACATATTGACGGTGGGACCTGAAATAACCTCAGAGGAAGTTGGGAGAGCCCAA 623
Query 73 GGAATTTTTGCAGCGACCGACCAGAATAAGTTTAGTCTGCTTATGGCTTTCAACTTGGTT 132
|||||||| ||| || |||||||||| || ||| |||||||||||||||||||||| |||
Sbjct 624 GGAATTTTCGCATCGGCCGACCAGAACAACTTTGGTCTGCTTATGGCTTTCAACTTTGTT 683
Query 133 TTCACCAAGGGTGAATTTTCGGGCAGCACGGGGTCGATGTATGGCCGGAATCCGATAATG 192
||||| |||||||||||||| |||||||| | ||| ||||||||||||||||||||| |
Sbjct 684 TTCACAAAGGGTGAATTTTCCGGCAGCACCGTGTCCATGTATGGCCGGAATCCGATATTT 743
Query 193 TCAAAGGTGAGAGAGATGCCGATCATCGGAGGTACGGGAGCTTTTAGGTTTGGTAGAGGA 252
|| |||||||||||||||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct 744 TCGAAGGTGAGAGAGATGCCGATCATCGGAGGTACTGGAGCATTCAGGTTCGGAAGAGGA 803
Query 253 TATGCGCAGGCCAAGACTTTTACGTTCAATACTACCCGTGGAAATGCTGTGGTCGAGTAT 312
||||| || ||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 804 TATGCACAAGCCAAGACTTTTACGTTCAATACTACCAGTGGAAATGCTGTGGTCAAGTAT 863
Query 313 AATGTCTATATCTGGCATTAA 333
||||| ||||| |||||||||
Sbjct 864 AATGTTTATATTTGGCATTAA 884
> AT1G65870.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr1:24503624-24504193 FORWARD
LENGTH=570
Length=570
Score = 392 bits (212), Expect = 1e-108
Identities = 294/334 (88%), Gaps = 4/334 (1%)
Strand=Plus/Plus
Query 2 TGGTTGCAGTGGTTGACGACATATTGACGGTGGGGCCTGAAATTACCTCAGAGGAAGTTG 61
|||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 239 TGGTTGCAGTCGTTGACGACAAATTGACGGTCGGGCCTGAAATTACCTCAGAGGAAGTTG 298
Query 62 GGAGAGCCCAAGGAATTTTTGCAGCGACCGACCAGAATAAGTTTAGTCTGCTTATGGCTT 121
|||||||||||||||| | |||| || | |||||||| ||| || |||||||||||||||
Sbjct 299 GGAGAGCCCAAGGAATGTATGCATCGGCTGACCAGAACAAGCTTGGTCTGCTTATGGCTT 358
Query 122 TCAACTTGGTTTTCACCAAGGGTGAATTTTCGGGCAGCACGG-GGTCGATGTATGGCCGG 180
| |||||||||||||| |||||| ||||||| | |||||| | || ||||||||||||||
Sbjct 359 TTAACTTGGTTTTCACGAAGGGTAAATTTTCCGACAGCACCGTGG-CGATGTATGGCCGG 417
Query 181 AATCC-GATAATGTCAAAGGTGAGAGAGATGCCGATCATCGGAGGTACGGGAGCTTTTAG 239
||||| | || |||| |||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 418 AATCCTG-TATTGTCGAAGGTGAGGGAAATGCCGATCATTGGAGGTACGGGAGCTTTCAG 476
Query 240 GTTTGGTAGAGGATATGCGCAGGCCAAGACTTTTACGTTCAATACTACCCGTGGAAATGC 299
||| || ||||||||||| |||||||||||| |||||||| |||| ||||| ||||
Sbjct 477 GTTCGGAAGAGGATATGCATTGGCCAAGACTTTGGTGTTCAATATTACCAGTGGAGATGC 536
Query 300 TGTGGTCGAGTATAATGTCTATATCTGGCATTAA 333
||||||||| |||||||||||||| |||||||||
Sbjct 537 TGTGGTCGAATATAATGTCTATATTTGGCATTAA 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15532734441
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5