BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324310
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564... 1386 0.0
AT3G58210.1 | Symbols: | TRAF-like family protein | chr3:21562... 385 7e-106
AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589... 303 2e-81
AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domai... 206 6e-52
AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595... 183 3e-45
AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597... 156 6e-37
AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:19769... 148 1e-34
AT1G31370.1 | Symbols: | Ubiquitin-specific protease family C1... 113 4e-24
AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243... 95.3 1e-18
AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240... 86.1 8e-16
AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245... 76.8 5e-13
> AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564450-21566482
REVERSE LENGTH=1636
Length=1636
Score = 1386 bits (750), Expect = 0.0
Identities = 1181/1376 (86%), Gaps = 82/1376 (6%)
Strand=Plus/Plus
Query 1 ATGGGGATAATACGGAGTCCATTTGATAAGAACAAGTTCACTTGGGTAATCAAGGATTTC 60
||||||| |||| |||||||| ||| ||||||| |||||| |||||||||||||||||||
Sbjct 48 ATGGGGAGAATAGGGAGTCCACTTGGTAAGAACGAGTTCAGTTGGGTAATCAAGGATTTC 107
Query 61 TCCTCTTTGCGATCTGA-GATGATTTATTCTGATGAATTTGTTCTCGGTGGCTGCAAATG 119
||||||||| || ||| | ||||||||||| |||||||| ||||||||||||||||
Sbjct 108 TCCTCTTTGGGA-GTGAGGGCAATTTATTCTGACGAATTTGTGATCGGTGGCTGCAAATG 166
Query 120 GCGTCTTATGGCCTATCCCGA-CGGAGATAGGATTAAAAAGTATATGTCTTTGTATGTGG 178
||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 167 GCGTCTTATAGCCTATCCC-ATGGGAAATAGGATTAAAAAGTATATGTCTTTGTATGTGG 225
Query 179 AAGTTGCTGATTCTAAACATTTGCCTTCTGGATGGAGTATACACACAGAATTGCGCATGG 238
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 226 AAGTTGCTGATTCTAAACATTTGCCTTCTGGATGGAGTATAAACACAGAATTGCGCATGG 285
Query 239 AAGTAGTAAATCACGATTTGTATAAGCCCTCCCAACAGAAATATAGAAAAAATTTTTGGT 298
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 286 AAGTTGTAAATCACAATTTGTATAAGCCCTCCCAACAGAAATATAGAAAAAATTTGTGGT 345
Query 299 TTGATAAGAAGACTCCTGCCTGGGGTTATAAAACCATGATTCCACATTCTAAACTTTGTG 358
||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 346 TTGATCAGAAGACTCCTTCCTGGGGTTATAAAACCATGATTCGTCATTCTAAACTTTCTG 405
Query 359 GTGAAGAAGGGTTTTTGGTAAATGGAGAAGTCACAATTGTAGTCCAGATAGACGTTTATA 418
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 406 GTGAAGAAGGGTTTTTGGTAAGTGGAGAAGTCACAATTGTAGTCAAGATAGACGTTTATA 465
Query 419 GAGTTATTGGCAAAGTAGCTGCAATAGAGA--T-T---------TCTGAAGAGGGATCT- 465
||||| |||||||||||||||||||||||| | | ||| ||||||||| |
Sbjct 466 GAGTTTTTGGCAAAGTAGCTGCAATAGAGATTTCTGAAGAGGGATCTAAAGAGGGATATG 525
Query 466 AA-A-G-----G--G-GG-ATATGAATATGAATCTGAAGAGGAATCTAAA-AAGAAATCT 513
|| | | | | || |||| || | ||||||||||||| || |||| | | |||||
Sbjct 526 AATATGAATCTGAAGAGGTATATAAAAAGGAATCTGAAGAGGGATATAAATATG-AATCT 584
Query 514 GTAGAGGGA-T-C-----TA-A---AT-G-GGGATATGAATATGAATCTGAAGAGGAATC 560
| ||| ||| | | | | || | | ||| ||||||||||||||||| ||||||
Sbjct 585 GAAGA-GGATTACGAAAAGAGACCTATAGAGAGATTTGAATATGAATCTGAAGCGGAATC 643
Query 561 TAAAAACGAAT-CTGTAGAGGGATCTA-ATGGGGGATATGAATATGAATCTGAAGAGGAA 618
|||||| || | | | |||| || ||| | ||||||| |||||||||||||||| || |
Sbjct 644 TAAAAAGGACTAC-GAAGAGAGAACTAGA-GGGGGATTTGAATATGAATCTGAACCGGTA 701
Query 619 TCTAAAAAGAAAT-CTGTAGAGGGATCTAAATG-GGGATATGAATATGAATCTGAAGAGG 676
||||||||| | | | | |||| || ||| | | | | | ||||||||||||||||| ||
Sbjct 702 TCTAAAAAGGATTAC-GAAGAGAGACCTAGA-GAGAGTTTTGAATATGAATCTGAAGCGG 759
Query 677 AATCTAAAAAGGATTCTGAAGAGGGATATA-A-AG-G----G---A-G-A--T----ATG 718
|||||||||||||||| |||||||||| || | || | | | | | | | |
Sbjct 760 AATCTAAAAAGGATTCCGAAGAGGGATCTAGAGAGAGATATGAATATGAATCTGAAGAGG 819
Query 719 AATCTAAAAAGGATTCTGA-AAGTGATTGTGGAGAGGAATCTGAAAAGGGTTCTGAAGAG 777
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 820 AATCTAAAAAGGATTCTGAGAA-TGATTGTGGAGAGGAATCTGAAAAGGATTCTGAAGAG 878
Query 778 GGAAGCAGGCCTCTTAAAAAGATTAAGCGAAATGATGATGGTGTGAAGTCTAATGATTCA 837
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 879 GGAAGCAGACCTCTTAAAAAGATTAAGAGGAATGATGATGGTGTGAAGTCTAATGATTCA 938
Query 838 GTCAACAAGACTCAACAACTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCT 897
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 939 GTCAACAAGACTCAACAAGTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCT 998
Query 898 TCACAGGTGAAATTTGTGAGCCGTATTTTTGAAAAATACCCAGACATTGCAGTAGGATTC 957
|||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 999 TCACAGGTGACACTTGTGAGCCGTATTTTAAAAAAATACCCAGACATTGCATTAGGATTC 1058
Query 958 CATGCAAAGAACCAACATCTTAAGACAGCATGCATGAATGTCCTCCTCAGCCTAATCGAG 1017
|||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 1059 AATGCAAAGAACCGACATCTGAGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAG 1118
Query 1018 ACACTGTGTCAGTCACCTCAGGAGCTCTCAAATGAAGATATGG-TGGAAGCAGACAATGC 1076
|||||||| |||||||| |||||||||||| | |||||||||| || |||||||||||||
Sbjct 1119 ACACTGTGCCAGTCACCACAGGAGCTCTCAGACGAAGATATGGATG-AAGCAGACAATGC 1177
Query 1077 TCTAACATATGTGAAAGATGCGGGCTTTAAGGTGGATTGGTTGGAGATGAAGCTGGAGGA 1136
||| ||| ||| ||||||| ||||||||||||||||||||||| | ||||||| ||||
Sbjct 1178 ACTAGTATACGTGCAAGATGCAGGCTTTAAGGTGGATTGGTTGGACAAGAAGCTGAAGGA 1237
Query 1137 AGTAAAAGAAAAGAAGGTGGTAGAGCAGACTGGTGAGACTCGGATTCAAGAGTTAGAGGA 1196
||||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 1238 AGTAAAAGAAAAGAAAGTGGTAGAGCAGACTGGTAAGACCCGGATTCAAGAATTAGAGGA 1297
Query 1197 GGACATGTTGAAC-A-TT-ATGT-GTAAGTGGTCAGACATGAAAGCTGTACTGGAGAAGG 1252
||| || | ||| | || | | | ||||| | ||||| | ||||| | ||||| || |
Sbjct 1298 GGA-AT-T-GAAGGAATTTAAGCAG-AAGTGCTTAGACAGGGAAGCTCTGCTGGAAAAAG 1353
Query 1253 AGAAGACAAAAGTGTTGGCAGCTAGAGCTCCTCTAACATTGGATGATTTTGTCTGA 1308
||||| ||||||||||||| || ||||| ||||||| ||||||||||||||||||
Sbjct 1354 AGAAGGCAAAAGTGTTGGCTGCCCGAGCTTCTCTAACTTTGGATGATTTTGTCTGA 1409
Score = 219 bits (118), Expect = 8e-56
Identities = 242/300 (81%), Gaps = 16/300 (5%)
Strand=Plus/Plus
Query 444 AGA-GATTTCTGAAGAGGGATCTAAAGGGGGATATGAATATGAATCTGAAGAGGAATCTA 502
||| |||| | ||| || || ||| || | ||| ||||||||||||||||| ||||||||
Sbjct 587 AGAGGATTAC-GAAAAGAGACCTATAGAGAGATTTGAATATGAATCTGAAGCGGAATCTA 645
Query 503 AAAAGAAAT-CTGTAGAGGGATCTAAATGGGGATATGAATATGAATCTGAAGAGGAATCT 561
||||| | | | | |||| || ||| | |||||| |||||||||||||||| || ||||
Sbjct 646 AAAAGGACTAC-GAAGAGAGAACTAGAGGGGGATTTGAATATGAATCTGAACCGGTATCT 704
Query 562 AAAAACGAAT-CTGTAGAGGGATCTA-ATGGGGGATATGAATATGAATCTGAAGAGGAAT 619
||||| || | | | |||| || ||| | | | | | ||||||||||||||||| |||||
Sbjct 705 AAAAAGGATTAC-GAAGAGAGACCTAGA-GAGAGTTTTGAATATGAATCTGAAGCGGAAT 762
Query 620 CTAAAAAGAAATCTGTAGAGGGATCTAAATG-GGGATATGAATATGAATCTGAAGAGGAA 678
|||||||| | || | ||||||||||| | | | ||||||||||||||||||||||||||
Sbjct 763 CTAAAAAGGATTCCGAAGAGGGATCTAGA-GAGAGATATGAATATGAATCTGAAGAGGAA 821
Query 679 TCTAAAAAGGATTCTGAAGAGGGATATAAAGGGAGATATGAATCTAAAAAGGATTCTGAA 738
||||||||||||||||| || ||| | || ||| |||||| ||||||||||||||
Sbjct 822 TCTAAAAAGGATTCTGA-GAATGAT-TGT-GG-AGAG--GAATCTGAAAAGGATTCTGAA 875
Score = 163 bits (88), Expect = 4e-39
Identities = 156/188 (83%), Gaps = 7/188 (4%)
Strand=Plus/Plus
Query 454 GAAGAGGGATCTAAAGGGGGATATGAATATGAATCTGAAGAGGAATCTAAAAAGAAAT-C 512
|||||| || ||| |||||||| |||||||||||||||| || |||||||||| | | |
Sbjct 657 GAAGAGAGAACTAGAGGGGGATTTGAATATGAATCTGAACCGGTATCTAAAAAGGATTAC 716
Query 513 TGTAGAGGGATCTAAATG-GGGATATGAATATGAATCTGAAGAGGAATCTAAAAACGAAT 571
| |||| || ||| | | | | | ||||||||||||||||| |||||||||||| || |
Sbjct 717 -GAAGAGAGACCTAGA-GAGAGTTTTGAATATGAATCTGAAGCGGAATCTAAAAAGGATT 774
Query 572 CTGTAGAGGGATCTA-ATGGGGGATATGAATATGAATCTGAAGAGGAATCTAAAAAGAAA 630
| | ||||||||||| | | | ||||||||||||||||||||||||||||||||||| |
Sbjct 775 CCGAAGAGGGATCTAGA-GAGAGATATGAATATGAATCTGAAGAGGAATCTAAAAAGGAT 833
Query 631 TCTGTAGA 638
|||| |||
Sbjct 834 TCTG-AGA 840
Score = 130 bits (70), Expect = 4e-29
Identities = 141/174 (81%), Gaps = 9/174 (5%)
Strand=Plus/Plus
Query 447 GATTTCTGAAGAGGGATCTAAAGGGGGATATGAATATGAATCTGAAGAGGAATCTAAAAA 506
|||| | |||||| || ||| || | | | ||||||||||||||||| ||||||||||||
Sbjct 711 GATTAC-GAAGAGAGACCTAGAGAGAGTTTTGAATATGAATCTGAAGCGGAATCTAAAAA 769
Query 507 GAAATCTGTAGAGGGATCTAAATG-GGGATATGAATATGAATCTGAAGAGGAATCTAAAA 565
| | || | ||||||||||| | | | |||||||||||||||||||||||||||||||||
Sbjct 770 GGATTCCGAAGAGGGATCTAGA-GAGAGATATGAATATGAATCTGAAGAGGAATCTAAAA 828
Query 566 ACGAATCTGTAGAGGGATCTAATGG-G-GGA-TATGAATATGAATCTGAAGAGG 616
| || |||| ||| ||| | ||| | ||| | |||| | || ||||||||||
Sbjct 829 AGGATTCTG-AGAATGAT-TG-TGGAGAGGAATCTGAAAAGGATTCTGAAGAGG 879
Score = 87.9 bits (47), Expect = 2e-16
Identities = 62/69 (90%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 450 TTCTGAAGAGGGATCTAAAGGGGGATATGAATATGAATCTGAAGAGGAATCTAAAAAGAA 509
||| ||||||||||||| || | ||||||||||||||||||||||||||||||||||| |
Sbjct 773 TTCCGAAGAGGGATCTAGAGAGAGATATGAATATGAATCTGAAGAGGAATCTAAAAAGGA 832
Query 510 ATCTGTAGA 518
|||| |||
Sbjct 833 TTCTG-AGA 840
> AT3G58210.1 | Symbols: | TRAF-like family protein | chr3:21562442-21564067
REVERSE LENGTH=1196
Length=1196
Score = 385 bits (208), Expect = 7e-106
Identities = 421/521 (81%), Gaps = 25/521 (5%)
Strand=Plus/Plus
Query 793 AAAAAGATTAAGCG-AAATGATGATGGTGTGAAGTCTAATGA-TTCA-G-TCAACAAGAC 848
|||||| | ||| | | || ||||| |||| |||||||||| || | | ||||| ||||
Sbjct 475 AAAAAGGTAAAG-GTAGATTATGATCATGTGGAGTCTAATGATTTGATGATCAACGAGAC 533
Query 849 TCAACAACTG-AAG-GAAAC-CATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT 905
|| || | | || | ||| |||||| ||||||| ||||||||||||||||| |||||
Sbjct 534 TC--CACCGGTTAGTG-AACTCATGGACGTCAATGGTTTTCAAGTTCTTCCTTCCCAGGT 590
Query 906 GAAATTTGTG-AGCCGTATTTTTGAAAAATACCCAGACATTGCAGTAGGA-TTCCATGCA 963
| | |||||| || ||||||||||||||| | |||||||||||| | || |||| | ||
Sbjct 591 GGATTTTGTGAAG-CGTATTTTTGAAAAACATCCAGACATTGCA-AAAGATTTCCGTCCA 648
Query 964 AAGAACCAACATCTTAAGACAGCATGCATGAATGTCCTCCTCAGCCTAATCGAGACACTG 1023
||||||| |||||| | || ||||||||||||| || | |||||| |||| |||||| ||
Sbjct 649 AAGAACCCACATCTGAGGAAAGCATGCATGAATTTCTTGCTCAGCTTAATGGAGACATTG 708
Query 1024 TGTCAGTCACCTCAGGAGCTCTCAAATGAAGATATGGTGGAAGCAGACAATGCTCTAACA 1083
|| || |||||||| |||| |||||||||||| | ||||||||||||||||| || |||
Sbjct 709 TGCCAACCACCTCAGAAGCTATCAAATGAAGATCTTGTGGAAGCAGACAATGCACTGACA 768
Query 1084 TATGTGAAAGATGCGGGCTTTAAGGTGGATTGGTTGGAGATGAAGCTGGAGGAAGTAAAA 1143
|| ||||||| | |||| ||||| |||||||||||||||| ||||| |||||||| ||
Sbjct 769 TACGTGAAAGTTTCGGGGTTTAAAGTGGATTGGTTGGAGAAAAAGCTAGAGGAAGTGAA- 827
Query 1144 GAAAA-GAAGGTGGTAGAGCAGACTGGTGAGACTCGGATTCAAGAGTTAGAGGAGGACAT 1202
||||| ||||| || ||| |||||||||||| |||| |||||||| |||||||||| ||
Sbjct 828 GAAAAAGAAGGAGGAAGAACAGACTGGTGAGGCTCGAATTCAAGAACTAGAGGAGGA-AT 886
Query 1203 GTTGAAC-A-TT-ATGT-GTAAGTGGTCAGACATGAAAGCTGTACTGGAGAAGGAGAAGA 1258
| ||| | || | | | ||||| | ||| | | ||||| | |||||||| || |||
Sbjct 887 -T-GAAGGAATTTAAGCAG-AAGTGCTTAGATAGGGAAGCTATGCTGGAGAAAGAAAAGG 943
Query 1259 CAAAAGTGTTGGCAGCTAGAGCTCCTCTAACATTGGATGAT 1299
|||| ||||| |||||||||||||||||||||||||||||
Sbjct 944 CAAAGGTGTTAACAGCTAGAGCTCCTCTAACATTGGATGAT 984
> AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589071-21590401
REVERSE LENGTH=978
Length=978
Score = 303 bits (164), Expect = 2e-81
Identities = 275/328 (84%), Gaps = 10/328 (3%)
Strand=Plus/Plus
Query 848 CTCAACAACTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-G 906
|||||||| ||||||||| ||| ||| | ||||||||||||||||||||||||||||| |
Sbjct 539 CTCAACAAGTGAAGGAAAGCATTGATGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAG 598
Query 907 AAATTTGTGAGCCGTATTTTTGAAAAATACCCAGACATTGCAGTAGGATTCCATGCAAAG 966
|| | |||||| ||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct 599 AA-TCTGTGAGACGTATTTTTAAAAAACATCCAGACATTGCAGTAGGATTCCAAGTAAAG 657
Query 967 AACCAACATCTTAAGACAGCATGCATGAATGTCCTCCTCAGCCTAATCGAGAC-ACTGTG 1025
||||||||||| | || | ||| ||||||| |||| ||| | |||| ||||| | ||||
Sbjct 658 AACCAACATCTGAGGAAAACATTCATGAATTTCCTTGTCAACGTAATTGAGACGA-TGTG 716
Query 1026 TCAGTCACCTC-AGGAGCTCTCAAATGAAGATATGGTGGAAGCAGACAATGC-TCTAACA 1083
|| || | || |||||||||||||||||||| | ||||||| ||||| ||| | | |||
Sbjct 717 CCAATCTC-TCCAGGAGCTCTCAAATGAAGATCTTGTGGAAGTAGACATTGCGT-TGACA 774
Query 1084 TA-TGTGAAAGATGCGGGCTTTAAGGTGGATTGGTTGGAGATGAAGCTGGAGGAAGTAAA 1142
|| | ||||||||||||| ||||||||||||||||| |||| ||||||||| | || ||
Sbjct 775 TACT-TGAAAGATGCGGGATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCATGTGAA 833
Query 1143 AGAAAAGAAGGTGGTAGAGCAGACTGGT 1170
||||||||||| | ||| ||| |||||
Sbjct 834 AGAAAAGAAGGAGAAAGAACAGTCTGGT 861
> AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domain-containing
protein | chr3:16343333-16346027 FORWARD LENGTH=1695
Length=1695
Score = 206 bits (111), Expect = 6e-52
Identities = 311/403 (77%), Gaps = 32/403 (8%)
Strand=Plus/Plus
Query 871 GATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTGAAATTTGTGA-GCCGTATTTTTGA 929
||| |||||||||||||||||||||||||||||| | ||| ||||| || |||| || ||
Sbjct 523 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAGC-GTATATTCGA 581
Query 930 AAAATACCCAGACATTGCAGTAG-GATTCC-ATGCAAAGAACCAACATCTTAAGA-CAGC 986
|| | ||||| |||| ||| ||| | |||| | |||||||||||||| || || || |
Sbjct 582 AAGACACCCATACATGGCATTAGAG-TTCCGA-GCAAAGAACCAACAG-TTGAGGGCATC 638
Query 987 ATGCATGAATGTCCTCCTCAGCCTAATCGAGACACTGTGTCAGTCACCT-CAGGAGCTCT 1045
||| || ||||||||||||||||||||| |||| |||| ||||||| | || || | |
Sbjct 639 ATGTATAAATGTCCTCCTCAGCCTAATCAAGACGTTGTGCCAGTCAC-TGCAAGATATTT 697
Query 1046 CAAATGAAGA--TATGGTGGAAGCAGA-CAATGCT-CTAACATATG-TG-AAAGATGCGG 1099
| | ||| || || || || |||| ||| | | ||||||| | || ||| || | |
Sbjct 698 CCATTGATGACCTA-GGCCAAA-CAGAGCAA-G-TACTAACAT-TCCTGCAAA-ATTCTG 751
Query 1100 GCTTTAAGGTGGATTGGTTGGAGA-TGAAGCTGGAGGAAGTAAAAGAAAAGAAGGTGGTA 1158
| ||||||||||||||| ||||| | || |||||||||||||| ||||||||| | |
Sbjct 752 GATTTAAGGTGGATTGGCTGGAGCGTAAA-CTGGAGGAAGTAAAGGAAAAGAAGATCCAA 810
Query 1159 GAGCAGACTGGTGAGACTCGGATTCAAG-AGTTAGAGGAGGACATGTTGAACATT-ATGT 1216
||||| | |||| || ||||||| |||| | |||||||| ||| || | | || | |
Sbjct 811 GAGCACATTGGTAAGTCTCGGATGCAAGGA-TTAGAGGAAGACCTGAAGGTC-TTCAAGA 868
Query 1217 -GTAAGTGGTCAGACAT-GAAAGCTGTACTGGAGAAGGAGAAG 1257
| ||||| || ||||| ||| ||| |||||||||| ||||||
Sbjct 869 AG-AAGTGCTCTGACATAGAA-GCTCTACTGGAGAAAGAGAAG 909
> AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595774-21596538
REVERSE LENGTH=660
Length=660
Score = 183 bits (99), Expect = 3e-45
Identities = 287/376 (76%), Gaps = 20/376 (5%)
Strand=Plus/Plus
Query 787 CCTCTTAAAAAGATTAAGCGAAATGATGATGGTGTGA-AGTCTAATGATTCAGTCAACAA 845
||||| |||||||| |||| | ||||| ||| || | |||| |||||| ||||| |
Sbjct 139 CCTCTGAAAAAGATAAAGCTAGATGATAATGATG-CAGTGTCTTTTGATTCTCTCAACGA 197
Query 846 GAC-TCAACAACTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGG 904
||| || || | | ||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 198 GACTTC-ACCAGTAAAGGAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGG 256
Query 905 T-GAAATTTGTGA-GCCGTATTTTTGAAAAATACCCAGACATTGCAGT-AGGATTCCATG 961
| ||| | ||||| | |||| ||||||| | | |||||| ||||| | | ||||| |
Sbjct 257 TAGAA-TCTGTGAAGT-GTATATTTGAAAGACATCCAGACTTTGCA-TCAAAATTCCGTC 313
Query 962 CAAAGAACCAACATCTT-AAGACAGCATGCATGAATGTCCTCCTCAGC-CTAATCGAGAC 1019
||||||| | || ||| ||| || ||| ||||| ||||||||| || ||||| ||||
Sbjct 314 CAAAGAATCGGCA-CTTGAAGTCAACATACATGACTGTCCTCCT-AGGACTAATTAAGAC 371
Query 1020 ACTGTGTCAGTCACCTCAGGAGCTCTCAAATGAAGATATGGTGGAAGCAGACAATGCTCT 1079
|||| |||| |||| |||||||| | | || ||| ||| |||||| | ||| |
Sbjct 372 GTTGTGCCAGTTACCTGAGGAGCTCACTGACGATGATCTGGACGAAGCATCCGTTGCAGT 431
Query 1080 AACATATGTG-AAAGATGCG-GGCTTTAAGGT-GGATTGGTTGGAGATGAAGCTGGAGGA 1136
|||| ||| ||| ||| | ||||| ||| | |||||||||||||| |||||| | |||
Sbjct 432 GTCATACGTGGAAA-ATG-GTGGCTT-AAGATTGGATTGGTTGGAGAAGAAGCTTGCGGA 488
Query 1137 AGTAAAAGAAAAGAAG 1152
||| || | |||||||
Sbjct 489 AGTTAAGGCAAAGAAG 504
> AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597799-21599568
REVERSE LENGTH=1236
Length=1236
Score = 156 bits (84), Expect = 6e-37
Identities = 244/318 (77%), Gaps = 23/318 (7%)
Strand=Plus/Plus
Query 847 ACTC-AACA-ACTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGG 904
|||| |||| ||| || ||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 599 ACTCAAACAGACTCAA-CAAATCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGG 657
Query 905 T-GAAATTTGTGA-GCCGTATTTTTGAAAAATACCCAGACATTGCAGT-AGGATTCCATG 961
| ||| | ||||| || |||| ||||||| ||||||| |||||||| | || | ||| |
Sbjct 658 TAGAA-TCTGTGAAGC-GTATATTTGAAATATACCCAAACATTGCA-TCAGAAGTCCCTT 714
Query 962 CAAAGAA-CCAACATCTTAAGACAGCATGCATGAATGTCCTCCTCAGCCTAATCGAGACA 1020
||| ||| ||| ||| |||||| || ||||||||| |||||| | |||| || ||
Sbjct 715 CAATGAAACCATG-TCTGAAGACATTATACATGAATGTACTCCTCGGAATAATTGAAACG 773
Query 1021 CTGTGTCAG-TCACCT-CAGGAGCTCTCAAATGAA-GATATGG-TGGAAGCAGACAATGC 1076
||||| || | ||| | ||||||||| || | ||| ||| || ||||| || |||
Sbjct 774 CTGTGCCAACTG-CCTGC-GGAGCTCTCTGAT-ACTGATCTGGATG-AAGCATCCATTGC 829
Query 1077 TCTAACATAT-GTGAAAGATGCG-GGCTTTAAGGTGGATTGGTTGGAGATGAAGCTGGAG 1134
| || | ||| | | | | |||||||| |||||||||||||||| |||||| ||
Sbjct 830 AGTTTTAT-TCGTGTCACAAG-GTGGCTTTAAAGTGGATTGGTTGGAGAAGAAGCTCAAG 887
Query 1135 GAAGTAAAAGAAAAGAAG 1152
|||||||| |||||||||
Sbjct 888 GAAGTAAAGGAAAAGAAG 905
> AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:1976918-1978553
FORWARD LENGTH=1082
Length=1082
Score = 148 bits (80), Expect = 1e-34
Identities = 230/300 (77%), Gaps = 20/300 (7%)
Strand=Plus/Plus
Query 863 AAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTGAAATT-TGTGA-GCCG 920
||||||| ||| ||||||||||||||||||||||||||||||| | ||| ||||| || |
Sbjct 625 AAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGT-AGATTCTGTGAAGC-G 682
Query 921 TATT-TTTGAAAAATACCCAGACATTGCAGT-AGGATTCCATGC--AAAGAA-CCAACAT 975
| || ||||||||| ||| ||| |||| | | | ||| | | | ||| || ||| ||
Sbjct 683 T-TTGTTTGAAAAAAACCTAGATATTGTA-TCAAAATTTCGT-CTTAAA-AATCCAT-AT 737
Query 976 CTT-AAGACAGCATGCATGAATGTCCTCCTCAGCCTAATCGAGACACTGTGTCAGTCACC 1034
|| ||||| || ||||||||| ||||||| || ||| ||| || |||||||| || ||
Sbjct 738 -TTGAAGACTGCGTGCATGAATCTCCTCCTGAGTTTAACCGAAACGCTGTGTCAATCGCC 796
Query 1035 TCAGGAGCTCTCAAATGAAGATATGG-TGGAAGCAGACAATGCTCTAACATATGTGAAAG 1093
||| || ||||| ||||| | | | || | |||| ||| || ||||| ||| ||
Sbjct 797 TCAAGAACTCTCCAATGATGGTCTCTCTG-ATGCAGGTGTTGCACTGGCATATTTGATAG 855
Query 1094 ATGC-GGGCTTTAAGGTGGATTGGTTGGAGATGAAGCTGGAGGAAGTAAAAGAAAAGAAG 1152
| | |||||| ||| ||||||||||||||| ||| || || ||| |||| |||||||||
Sbjct 856 AAACAGGGCTT-AAGTTGGATTGGTTGGAGAAGAAACTTGATGAATTAAAGGAAAAGAAG 914
> AT1G31370.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr1:11238298-11239363 REVERSE LENGTH=582
Length=582
Score = 113 bits (61), Expect = 4e-24
Identities = 142/179 (79%), Gaps = 14/179 (8%)
Strand=Plus/Plus
Query 857 TGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GAAATTTGTG 915
||| ||||| ||| ||| ||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 317 TGATGGAAAGCATCGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA-TCTGTG 375
Query 916 A-GCCGTATT-TTTGAAAAATACCCAGACATTGCAGTAGGA-TTCCATGCAAAGAACCAA 972
| | || || |||||||| |||||||||||||| | | | |||| | ||||||||| |
Sbjct 376 AAGA-GT-TTGTTTGAAAAGCACCCAGACATTGCA-TCGAAATTCCGTCCAAAGAACCCA 432
Query 973 CATCTTAAGA-CAGCATGCATGAAT-GTCCTCCTCAGCCTAA-TCGAGACACTGTGTCA 1028
||||| | || || ||| | ||||| ||| | || ||| | | | |||| ||||||||
Sbjct 433 CATCTGA-GAACAACATCCTTGAATAGTC-TACTAAGCTTGACT-GAGATTCTGTGTCA 488
> AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243191-11244392
REVERSE LENGTH=807
Length=807
Score = 95.3 bits (51), Expect = 1e-18
Identities = 208/281 (74%), Gaps = 22/281 (8%)
Strand=Plus/Plus
Query 862 GAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GAAATTTGTGAGCCG 920
|||| ||| ||||||||||||||||||||||||||||||||||| ||| | ||||| |
Sbjct 460 GAAAGCATCGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA-TCTGTGAACAA 518
Query 921 TATTTTTGAAAAATACCCAGACATTGCAGT-AGGATTCCATGCAAAGAACCAACATCTTA 979
| | ||||| || |||||||||| | | | || ||| | | | ||||||| || | | |
Sbjct 519 TCTCTTTGAGAAGCACCCAGACATCGTA-TCAGAATTTCGTTCCAAGAACCCACTTATGA 577
Query 980 AGA-CAGCATGCATGAATGTCCTCCTCA-GCCTAA-TCGAGA-CACTGTGTC-AGTCAC- 1033
|| || ||| | |||||| ||| || | | | | | |||| | ||||| | |||| |
Sbjct 578 -GAACAACATACTTGAATGACCTACT-ATGTTTGACT-GAGATC-CTGTG-CGAGTC-CT 631
Query 1034 CTCAGGAGCTCTCAAATGAAGATATGG-TGGAA-GCAG-ACAATGCTCTAACATATGTGA 1090
|| |||| ||||| | || ||||||| | || || | | | | ||||| | | |||
Sbjct 632 CTGAGGAACTCTCCACTGGTGATATGGCT--AACGC-GTATTCTACACTAACTTGTTTGA 688
Query 1091 AAGATGCGGGCTTTAAGGTGGATTGGTTGGAGATGAAGCTG 1131
|| | ||||| |||||| |||||||| |||||| ||| |||
Sbjct 689 AAAAAGCGGGGTTTAAGTTGGATTGGCTGGAGAAGAAACTG 729
> AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240451-11241099
REVERSE LENGTH=528
Length=528
Score = 86.1 bits (46), Expect = 8e-16
Identities = 74/87 (85%), Gaps = 4/87 (5%)
Strand=Plus/Plus
Query 857 TGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GAAATTTGTG 915
||| ||||| |||| || ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 131 TGATGGAAAGCATGTATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA-TTTGTG 189
Query 916 A-GCCGTATTTTTGAAAAATACCCAGA 941
| | || | |||||||| |||||||
Sbjct 190 AAGA-GTCTGTTTGAAAAGCACCCAGA 215
> AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245225-11246481
REVERSE LENGTH=837
Length=837
Score = 76.8 bits (41), Expect = 5e-13
Identities = 65/76 (86%), Gaps = 4/76 (5%)
Strand=Plus/Plus
Query 875 TCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GAAATTTGTGAGCCGTATTTTTGAAAAA 933
||||||||||||||||||||||||||||||| ||| | ||||| | | | || |||||
Sbjct 464 TCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA-TCTGTGAACAATCTCTTC-AAAAA 521
Query 934 T-ACCCAGACATTGCA 948
| ||||||||||||||
Sbjct 522 TCACCCAGACATTGCA 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5