BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg324311

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G58230.1 | Symbols:  | Ubiquitin-specific protease family C1...   732    0.0  


> AT3G58230.1 | Symbols:  | Ubiquitin-specific protease family 
C19-related protein | chr3:21566860-21567396 REVERSE LENGTH=462
Length=462

 Score =  732 bits (396),  Expect = 0.0
 Identities = 441/463 (95%), Gaps = 2/463 (0%)
 Strand=Plus/Plus

Query  1    ATGTGGAATGGTGATGGAACCGTGGAGGTCTATGGCTTTCGAGTTTTCTATTCAGAGGTG  60
            |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct  1    ATGTGGAATGGTGATGGAACCGTGGAGGTCAATGGCTTTCGAGTTTTCTACTCAGAGGTG  60

Query  61   GATTGTGTGAGGAGAATCTTTGAAAAATACCCAGAAACCGCAACGAATATTCGTCCAAAG  120
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  61   GATTGTGTGAGGAGAATCTTTGAAAAACACCCAGAAACCGCAACGAATATTCGTCCAAAG  120

Query  121  AACCAAATGGTGAAGAATGCTTACATGAACAACCTCCTCGACCTCATTGACATAATTTGC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AACCAAATGGTGAAGAATGCTTACATGAACAACCTCCTCGACCTCATTGACATAATTTGC  180

Query  181  TTAGCTCCTCAGGAGCTAACAGAGGAGGAACTAAGAAATGCAGAGAGC-CAGCTTTTGGA  239
            ||||||||||||||||| |||||||||||| ||||||||||||||| | | |||||||||
Sbjct  181  TTAGCTCCTCAGGAGCTCACAGAGGAGGAAATAAGAAATGCAGAGAACAC-GCTTTTGGA  239

Query  240  ACTGGTAGAGGTAGGTTTCAAGTTGGATTGGCTGAAGAATAAGCTGGAAGAGCTTTGCGT  299
            ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct  240  ACTGGTAGAGGTAGGTTTCAAGTTGGATTGGCTGAAGAACAGGCTGGAGGAGCTTTGCGT  299

Query  300  GAAGAAGAAGAAAATGGAAGCTCGTGGGGCTCGAATGAGAGAACTCGATGGATTGATCAT  359
            ||||||||||||||||||||| ||||||||| | |||||||||||||||||| ||||| |
Sbjct  300  GAAGAAGAAGAAAATGGAAGCACGTGGGGCTAGGATGAGAGAACTCGATGGAATGATCGT  359

Query  360  GGAACAGAGGCGGGTTTTGTGGGAGCTTGAAACCGAACTGAAGAATGAAGAGAACGAAGC  419
            |||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||
Sbjct  360  GGAACAGAGGCGTGTTTTGTGGGCTCTTGAAACCGAACTGAAGAATGAAGAAAACGAAGC  419

Query  420  TGTTTCCGACAGTGCTCGACTTGGTTTTGAGGATGTTGTTTGA  462
            ||||||||||||||||||||||||||| || ||||||||||||
Sbjct  420  TGTTTCCGACAGTGCTCGACTTGGTTTCGATGATGTTGTTTGA  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5