BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324316
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58290.1 | Symbols: | TRAF-like superfamily protein | chr3:... 1096 0.0
> AT3G58290.1 | Symbols: | TRAF-like superfamily protein | chr3:21580572-21581861
REVERSE LENGTH=849
Length=849
Score = 1096 bits (593), Expect = 0.0
Identities = 650/678 (96%), Gaps = 2/678 (0%)
Strand=Plus/Plus
Query 143 AAAATAATGGTGATCACTTGTCTCTGTATCTGGAAGTTGATTTCGAATCAATGCCTTGTG 202
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 173 AAAATAATGGTGATCACTTGTCTCTGTATCTGGAAGTTGATTTCGAATCATTGCCTTGTG 232
Query 203 GATGGAGACAATATACACAATTTCGTTTTACGGTAGTTAATCAAATTTCAGAGCATTTAT 262
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 233 GATGGAGACAATATACACAATTTCGTTTTACGGTAGTAAATCAAATTTCAGAGCATTCAT 292
Query 263 CCGTAAAGAGAGAAGGACGAAAGTGGTTTGATAAGAAAGCTCCGGAATGGGGTTGGGAAG 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CCGTAAAGAGAGAAGGACGAAAGTGGTTTGATAAGAAAGCTCCGGAATGGGGTTGGGAAG 352
Query 323 ACATGATTTCTTTAACAAAACTTAATGATATAAATAGTGGGTTCTTGGTGAACGGAGAGC 382
| ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 353 AGATGATATCTCTAACAAAACTTAATGATATAAATAGTGGGTTCGTGGTGAACGGAGAGC 412
Query 383 TCATGATTGTTGCTGAAGTAGAAACTTTTGAAGCTATTAGCACATCACAAGTTGCAG-GG 441
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 413 TCATGATTGTTGCTGAAGTAGAAACTTTTGAAGCTGTTAGCACATCACAAGTTGCAGCGG 472
Query 442 ACTAGTGTTGATAGTGAATGGACACTTCTTGACTATTACTCTTCATCTGAAGAGGACAAG 501
| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 473 T-TCGTGATGATAGTGAATGGACACTTCTTGGCTATTACTCTTCATCTGAAGAGGACAAG 531
Query 502 GATGATGTAACTGTTGTAATCAAGGGCTTTCATGTTCTTGATTCGCAAGTTTATCAAGTG 561
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 532 GATGATGTAACTGTTGTAGTCAAGGGCTTTCATGTTCTTGATTCGCAAGTTAATCAAGTG 591
Query 562 AAGGAAACCTTTGAGAAACATCCAGATCTCGCATCGAATTTGATTTTAAAGAATCAAAAT 621
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 592 AAGGAAATCTTTGAGAAACATCCAGATCTCGCAACGAATTTGGTTTTAAAGAATCAAAAT 651
Query 622 CTCAAGAATATTTACATGGGTTTTCTTCTTGACTTAATCAAGACATTGAGCAAGTCACCT 681
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 652 CTCAAGAATGTTTACATGGGTTTTCTTCTTGACTTAATCAAGACATTGAGCAAGTTGCCT 711
Query 682 AAGGAACTCACTGAGGACGACTTAAACTTCGCTGACAGTACGCTTTCTGATCTGACAAAA 741
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 712 AAGGAACTCACTGAGGAAGACTTAAACTTCGCCGACAGTACGCTTTCTGATCTGACAAAT 771
Query 742 GCAGGCTTCATGTTGGATTGGTTGCGTCAGAAGTTGGATAGGGCTTTGGAGAAACAAATA 801
|||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||
Sbjct 772 GCAGGCTTCATGTTGGATTGGTTGCGTCTGAAGTTGAATAGGGCGTTGGAGAAACAAATA 831
Query 802 GCTTGTGACGCAGGCTAA 819
||||||||||||||||||
Sbjct 832 GCTTGTGACGCAGGCTAA 849
Score = 257 bits (139), Expect = 1e-67
Identities = 155/163 (95%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 1 ATGACATCAATAATGAACCCATGTGATAAGAAGTTTGTTTGGGTTATAAAGAATTTTTCC 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACATCAATCATGAACCCATGTGATAAGAAGTTTGTTTGGGTTATAAAGAATTTTTCC 60
Query 61 TCTTTACAATTACAAGATTGTTATGTTTCTGTTCCAGTTCTGATCCGTGACGTCAAATGG 120
||||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||
Sbjct 61 TCTTTGCAATTACAAGATTGTTATGTTTCTGATCCGGTTCTGATCCATGACGTCAATTGG 120
Query 121 CGTCTTTTTGCCTATCCGGAGGAAAATAATGGTGATCACTTGT 163
|||||||||||||||||||||| || |||||||||||||||||
Sbjct 121 CGTCTTTTTGCCTATCCGGAGGGAAGTAATGGTGATCACTTGT 163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5