BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324326
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58460.2 | Symbols: RBL15 | RHOMBOID-like protein 15 | chr3:... 2006 0.0
> AT3G58460.2 | Symbols: RBL15 | RHOMBOID-like protein 15 | chr3:21623202-21626701
REVERSE LENGTH=1512
Length=1512
Score = 2006 bits (1086), Expect = 0.0
Identities = 1155/1189 (97%), Gaps = 2/1189 (0%)
Strand=Plus/Plus
Query 25 GCTGGGGTTCAAACTAGAGTTGGACAATGGTGGAATGCCATACCGTTCCTCACGTCATCG 84
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 153 GCTGGGGTTCAAACTCGAGTTGGACAGTGGTGGAATGCCATACCTTTCCTCACGTCATCG 212
Query 85 GTGGTGGTAGTTTGTGGGGTCATTTACCTGATATGCCTCTTAACTGGATATGACACTTTC 144
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 GTGGTGGTAGTTTGTGGGGTCATTTACCTGATATGCCTCTTAACTGGATATGACACTTTT 272
Query 145 TATGAAGTATGCTTCTTACCCTCGGCAATTGTATCGAGGTTCCAAGTTTATAGGTTTTAT 204
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 273 TATGAAGTATGCTTCTTACCCTCGGCAATCATATCGAGGTTCCAAGTTTATAGGTTTTAT 332
Query 205 ACTGCCATTATTTTCCATGGATCACTGCTTCATGTTCTGTTCAACATGATGGCATTGGTT 264
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 ACAGCCATTATTTTCCATGGATCACTGCTTCATGTTCTGTTCAACATGATGGCATTGGTT 392
Query 265 CCTATGGGCTCTGAGCTGGAGAGAATCATGGGATCTGTCCGTTTGCTTTACCTGACAATT 324
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 393 CCTATGGGCTCTGAGCTGGAGAGAATCATGGGATCTGTCCGTTTGCTTTACCTAACAGTT 452
Query 325 TTGCTGGCAACGACCAATGCCATATTGCATCTTATTATAGCATCCTTGGCCGGATATAAT 384
||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||
Sbjct 453 TTGCTGGCAACGACCAATGCCGTATTGCATCTTCTTATAGCATCCTTGGCGGGATATAAT 512
Query 385 CCCTTCTACCAATATGATCATCTCATGAATGAATGTGCCATTGGATTTTCTGGAATCTTG 444
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 513 CCCTTCTACCAATATGATCATCTCATGAATGAATGCGCCATTGGATTTTCTGGAATCTTG 572
Query 445 TTTTCTATGATTGTCATAGAGACAAGTCTCAGTGGAGTTACCTCTAGAAGTGTGTTTGGT 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TTTTCTATGATTGTCATAGAGACAAGTCTCAGTGGAGTTACCTCTAGAAGTGTGTTTGGT 632
Query 505 CTCTTCAACGTTCCCGCTAAACTGTATCCGTGGATCTTATTAATAGTATTCCAGCTTCTC 564
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 633 CTCTTCAACGTTCCCGCTAAACTGTATCCGTGGATCTTACTAATAGTATTCCAGCTTCTC 692
Query 565 ATGACAAATGTTTCACTGCTTGGGCACCTATGCGGCATCCTGTCTGGATTTTCATATTCT 624
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 693 ATGACAAATGTTTCACTGCTTGGGCATCTATGCGGCATCCTGTCTGGATTTTCATATTCT 752
Query 625 TATGGCCTCTTCAATTTCTTGATGCCTGGCTCTTCAGTTTTTACCACCATTGAGTCAGCC 684
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 753 TATGGCCTCTTCAATTTCTTGATGCCTGGCTCTTCATTTTTTACCACCATTGAGTCAGCC 812
Query 685 TCCTGGATGTCTAGCTTCGTAAGGCGACCCAAGTTCATTATGTGTACTGGCGGGAATCCT 744
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 813 TCCTGGATGTCTAGCTTCATTAGGCGACCCAAGTTCATTATGTGTACTGGCGGGAATCCT 872
Query 745 TCCAGCTACATCCCCACTTATTCTGCACAAAACACAACATCCAGTGGTTTCTCTACAGGA 804
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TCCAGCTATATTCCCACTTATTCTGCACAAAACACAACATCCAGTGGTTTCTCTACAGGA 932
Query 805 AATGCTTGGAGATCCTTGTCTTCATGGTTGCCACAGAGGGAAGCATCCAATCAGTCTTCT 864
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 933 AATGCTTGGAGATCCTTGTCTTCATGGTTGCCACAGAGGGAAGCATCTAATCAGTCTTCT 992
Query 865 GAGGACAGTAGATTTCCGGGGAGAGGTAGAACTCTTAGCACTGCCCGAGATCCAACTGCT 924
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 993 GAGGACAGTAGATTTCCGGGGAGAGGTAGAACTCTTAGCACTGCCCGAGATCCTACTGCT 1052
Query 925 CCAGCGGGAGAAACAGACCCAAATCTCCATGCTAGACTGCTGGAAGATAGCAGCTCTCCA 984
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1053 CCAGCTGGAGAAACAGACCCAAACCTCCATGCTAGACTGCTGGAAGATAGCAGCTCTCCA 1112
Query 985 GACCGCCTTTCTGATGCAACTGTCAACACCATGGCAGATTCAAGACAAGTGCCAATAGCT 1044
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1113 GACCGCCTTTCTGATGCAACTGTCAACACCGTGGCAGATTCAAGACAAGCGCCAATAGCT 1172
Query 1045 AATGCAGCAATCCTGCCCCAATCCCAGGGTCGTGTTGCTGCT-CCAGAAGAACAAATCCA 1103
||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1173 AATGCAGCAGTCCTGCCCCAATCCCAGGGTCGTGTTGCTGCTTCC-GAAGAACAAATCCA 1231
Query 1104 GAAACTCGTTGCCATGGGCTTCGATAGGACACAAGTGGAAGTGGCGCTTGCTGCTGCCGA 1163
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1232 GAAACTCGTAGCCATGGGCTTTGACAGGACACAAGTGGAAGTGGCGCTTGCTGCTGCCGA 1291
Query 1164 CGATGATCTAACCGTAGCAGTGGAGATCCTAATGAGCCAACAGGCATAA 1212
||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1292 CGATGATCTCACCGTAGCAGTGGAGATCCTAATGAGCCAACAGGCTTAA 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5