BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324401
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59260.1 | Symbols: | pirin, putative | chr3:21903839-21905... 1221 0.0
AT3G59220.1 | Symbols: PRN, PRN1, ATPIRIN1 | pirin | chr3:21894... 730 0.0
AT2G43120.1 | Symbols: | RmlC-like cupins superfamily protein ... 505 3e-142
> AT3G59260.1 | Symbols: | pirin, putative | chr3:21903839-21905188
FORWARD LENGTH=816
Length=816
Score = 1221 bits (661), Expect = 0.0
Identities = 766/817 (94%), Gaps = 6/817 (1%)
Strand=Plus/Plus
Query 47 ATGAAGGTGATGGTGCTGTTGTTAGACGAGGCATCACC----AAGAGTGACCAAGAGTTG 102
|||||||| ||||| |||| ||||| | |||||||||| ||||||||||| |||||
Sbjct 1 ATGAAGGTTATGGTACTGTCGTTAGGCAAGGCATCACCAAGTAAGAGTGACCATGAGTTA 60
Query 103 TTGGACCCGTTCGTCTCGCTAGTTGAATTTTCCGTTTCACCTCCTGGTGGATTCAAAGAT 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGGACCCGTTCGTCTCGCTAGTTGAATTTTCCGTTTCACCTCCTGGTGGATTCAAAGAT 120
Query 163 CATCCTCACAGAGGTTTTGAAAGTGTCACATACATGTTGCAAGGAGGCATCATTCACCAA 222
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 121 CATCCTCACAGAGGTTTTGAAAGTGTTACATACATGTTCCAGGGAGGCATCATTCACCAA 180
Query 223 GACTTTAATGGTAATAAAGGTACAATCCATGAAGGAGATGTTCAGTGGATGACAGCAGGA 282
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GACTGTAATGGTAATAAAGGTACAATCCATGAAGGAGATGTTCAGTGGATGACAGCAGGA 240
Query 283 AGAGGAATCATTCATTCTGAAATGCCTGAAGAACAAGTCAACAAGGGGTTACAGCTTTGG 342
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAGGAATCATTCATTCGGAAATGCCTGAAGAACAAGTCAACAAGGGGTTACAGCTTTGG 300
Query 343 ATCAACCTCCCTTCCAGTGACAAAATGATGGAGCCTAAAAATCTAGATATGTCGAGTTCA 402
|||||||||||||| |||| ||||||||| |||||||||||| |||| || |||||||||
Sbjct 301 ATCAACCTCCCTTCTAGTGCCAAAATGATCGAGCCTAAAAATATAGAAATCTCGAGTTCA 360
Query 403 GAGATTCCTAGAGCAGATGAATATGGAGTAGAGGTCAAAGTCATAGCTGGAGAGTCAATG 462
||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GAGATACCTAGCGCAGATGACTATGGAGTAGAGGTCAAAGTCATTGCTGGAGAGTCAATG 420
Query 463 GGAGTCAAATCTCCTTTCTACACAAAAACACCAGTCATGTTCCTGGACTTTACTCTCGAT 522
||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 421 GGAGTCAAATCTCCTTTCTACACAAAAACACCAATCATGTTCCTAGACTTTACGCTCGAT 480
Query 523 CCAAGAGTTCAAACCCACCAGACCGTTCCAGAGTCATGGACCGCCTTTGCCTACATTATA 582
|||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 481 CCAAAAGCTCAAACCCACCAGGCCGTTCCAGAGTCATGGACCGCCTTTGCCTACATTGTA 540
Query 583 GAAGGCGATGAAGGCGTGTTTAGCTCCTCGGACTCTTCCACAGTACAAGCACATAATGTT 642
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAGGCGATGAAGGCGTTTTTAGCTCCTCGGACTCTTCCACAGTACAAGCACATAATGTT 600
Query 643 GTGGTGTTTGGAACAGGGGACGAAGTTAGCGTGTGGAACACGTCAAGCTCTAGATCGTTG 702
||||||||||| |||||||| ||||||||||||||||||||||||| |||||| |||||
Sbjct 601 GTGGTGTTTGGGACAGGGGATGAAGTTAGCGTGTGGAACACGTCAAACTCTAGGCCGTTG 660
Query 703 AGGTTCTTGTTGATTGCAGGGGAACCGATTGGCGAGCCTGTGGTTGAGCGTGGGCCATTT 762
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 661 AGGTTCTTGTTGATTGCAGGGGAACCGATAGGCGAGCCTGTGGTTCAGCATGGGCCATTT 720
Query 763 GTGATGAACTCACAAGCTGAGATTGATATGACGATTAGGGACTATCGTAATGCCCA-GAA 821
|||||||||||||| | ||||||||| ||||| ||| ||||||||||||||| | | |||
Sbjct 721 GTGATGAACTCACAGGATGAGATTGAAATGACAATTGGGGACTATCGTAATGGC-ATGAA 779
Query 822 TGGCTTTGAAATGGCCAAGCATTGGAGGTCAGAGTGA 858
|||||| ||||||||||||||||||||||||||||||
Sbjct 780 TGGCTTCGAAATGGCCAAGCATTGGAGGTCAGAGTGA 816
> AT3G59220.1 | Symbols: PRN, PRN1, ATPIRIN1 | pirin | chr3:21894134-21895623
FORWARD LENGTH=1057
Length=1057
Score = 730 bits (395), Expect = 0.0
Identities = 693/834 (83%), Gaps = 32/834 (4%)
Strand=Plus/Plus
Query 41 TTGAGAATGAAGGTGATGGTGCTGTTGTTAGACGA-GGCATCACCAAGAGTGACCAAG-A 98
||||||| |||||||| || ||||| |||||| | |||||||| |||| ||||| || |
Sbjct 130 TTGAGAAGGAAGGTGAAGGAGCTGTCGTTAGA-AATGGCATCACAAAGATTGACC-AGAA 187
Query 99 GTTGTTGGACCCGTTCGTCTCGCTAGTTGAATTTTCCGTTTCACCTC-CTGGTGGATTCA 157
||| |||||||||||||| | |||||||||||||||| ||||| ||| | | |||||||
Sbjct 188 GTTATTGGACCCGTTCGTGTTGCTAGTTGAATTTTCCTTTTCA-CTCTCAGCTGGATTCC 246
Query 158 AAGATCATCCTCACAGAGGTTTTGAAAGTGTCACATACATGTTGCAAGGAGGCATCATTC 217
|||||||||||||||||||||||||||||| ||||||||| | || ||||| |||||||
Sbjct 247 CAGATCATCCTCACAGAGGTTTTGAAAGTGTTACATACATGCTACAGGGAGGTATCATTC 306
Query 218 ACCAAGACT-TTAATGGTAATAAAGGTACAATCCATGAAGGAGATGTTCAGTGGATGACA 276
|| |||| | ||| ||| ||||||||||||| || | |||||||||||||||||||||
Sbjct 307 ACAAAGA-TCCTAAAGGTCATAAAGGTACAATTCAAGCCGGAGATGTTCAGTGGATGACA 365
Query 277 GCAGGAAGAGGAATCATTCATTCTGAAATGCCTGAAGAACAAGTCAACAAGGGGTTACAG 336
||||||||||||||||||||||| ||| | || |||||| |||| ||||| || ||||||
Sbjct 366 GCAGGAAGAGGAATCATTCATTCCGAATTTCCGGAAGAAGAAGTAAACAATGGTTTACAG 425
Query 337 CTTTGGATCAACCTCCCTTCCAGTGACAAAATGA-TGGAGCCTAAAAATCTA-G-ATA-T 392
||||||||||| |||||||||| ||| ||||||| || | || |||| | || | | | |
Sbjct 426 CTTTGGATCAATCTCCCTTCCACTGAAAAAATGACTGAA-CC-AAAA-TATAAGGA-ACT 481
Query 393 GTCGAGTTCAGAGATTCCTAGAGCAGATGAATATGGAGTAGAGGTCAAAGTCATAGCTGG 452
||||||| ||| |||||| ||||||| ||| | ||||| ||||||||||||||||| ||
Sbjct 482 ATCGAGTTTAGACATTCCTCGAGCAGAAGAAAACGGAGTTGAGGTCAAAGTCATAGCCGG 541
Query 453 AGAGTCAATGGGAGTCAAATCTCCTTTCTACACAAAAACACCAGTCA-TGTTCCTGGACT 511
||| ||||||||| |||||||||| ||||||||| ||||||| || ||||||| ||||
Sbjct 542 AGATTCAATGGGAATCAAATCTCCAGTCTACACAAGAACACCAA-CAATGTTCCTTGACT 600
Query 512 TTACTCTCGATCCAAGAGT-TCAAACCCACCAGACCGTTCCAGAGTCATGGACCGCCTTT 570
|||| ||| | ||| || | |||||||||||| ||||||||||| ||||||||||| |||
Sbjct 601 TTACCCTCAAGCCAGGA-TCTCAAACCCACCAAACCGTTCCAGAATCATGGACCGC-TTT 658
Query 571 -GCCTACATTATAGAAGGCGATGAAGGCGTGTTTAGCT-CCTCGGACTCTTCCACAGTA- 627
|| ||||||||||||||||||||||| || ||| | | ||| | |||||||| || ||
Sbjct 659 CGCTTACATTATAGAAGGCGATGAAGGTGT-TTTCGGTTCCTTGAACTCTTCCGCAATAT 717
Query 628 CAAGCACATAATGTTGTGGTGTTTGGAACAGGGGACGAAGTTAGCGTGTGGAACACGTCA 687
| || || ||||||| |||||||| ||||||| ||||||||||||||||| ||||
Sbjct 718 CG-GCCCACCATGTTGTTGTGTTTGGGCCAGGGGATTTAGTTAGCGTGTGGAACAAGTCA 776
Query 688 AGCT-CTAGATCGTTGAGGTTCTTGTTGATTGCAGGGGAACCGATTGGCGAGCCTGTGGT 746
| || | || || |||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 777 A-CTTCGAGGTCATTGAGGTTTTTGTTGATTGCAGGGGAACCTATCGGCGAGCCTGTGGT 835
Query 747 TGAGCGTGGGCCATTTGTGATGAACTCACAAGCTGAGATTGATATGACGATT-AGGGACT 805
| || |||| || ||||||||||| ||||| || ||||| |||||| | || | | |||
Sbjct 836 TCAGTGTGGTCCCTTTGTGATGAATTCACAGGCGGAGATCGATATGGCTTTTGATG-ACT 894
Query 806 ATC-GTAATGCCCAGAATGGCTTTGAAATGGCCAAGCATTGGAGGTCAGAGTGA 858
||| | ||||| |||| || ||||||||||||||| || ||||| | |||||
Sbjct 895 ATCAG-AATGCTAAGAACGGGTTTGAAATGGCCAAGTGTTAGAGGTTACAGTGA 947
> AT2G43120.1 | Symbols: | RmlC-like cupins superfamily protein
| chr2:17927264-17928984 FORWARD LENGTH=1154
Length=1154
Score = 505 bits (273), Expect = 3e-142
Identities = 658/838 (79%), Gaps = 49/838 (6%)
Strand=Plus/Plus
Query 44 AGAATGAAGGTGATGGTGCTGTTGTTAGACGAGGCATCACCAAGAGTGACCAAG-AGTTG 102
|||| ||||| ||||| || || |||||||| ||||| ||| |||||| | || |||||
Sbjct 218 AGAAAGAAGGCGATGGAGCCGTCGTTAGACGTGGCATTTCCAGGAGTGAGC-AGAAGTTG 276
Query 103 TTGGACCCGTTCGT-CTCGCTAGTTGAATTTTCCGTTTCACCTCCTGGTGGATTCAAAGA 161
|| || || ||| | | ||||| |||||| |||||||| ||||| | ||| ||| ||
Sbjct 277 TTAGATCCTTTCTTGAT-GCTAGATGAATTCTCCGTTTCGCCTCCAGCTGGCTTCCCTGA 335
Query 162 TCATCCTCACAGAGGTTTTGAAAGTGTCACATACAT-GTTGCAAGGAGGCATCATTCACC 220
||||||||||||||| ||||||| ||| |||||| | | | | ||||| |||| |||||
Sbjct 336 TCATCCTCACAGAGGGTTTGAAACTGTTACATACGTACTAG-AGGGAGGAATCACTCACC 394
Query 221 AAGACTTTAATGGTAATAAAGGTACAATCCATGAAGGAGATGTTCAGTGGATGACAGCAG 280
||||||| || ||| | || |||||||| ||| || ||||||||||||||||| ||||
Sbjct 395 AAGACTTCAAAGGTCACAAGGGTACAATATATGCTGGTGATGTTCAGTGGATGACTGCAG 454
Query 281 GAAGAGGAATCATTCATTCTGAAATGCCTGAAGAACAAGTCAACAAGGGGTTACAGCTTT 340
||||||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||
Sbjct 455 GAAGAGGAATCATTCATTCTGAAATGCCTGAAGAAGAAGTCAACAAAGGTTTACAACTTT 514
Query 341 GGATCAACCTC-CCTTCCAGTGACAAAATGATGGAGCCTAAAA-ATCTAGATA-TGTCG- 396
||||||| || ||| ||| || |||||||| || || ||| | | ||| | |||||
Sbjct 515 GGATCAATCTTTCCT-CCAACGAGAAAATGATAGAACC-AAACTACCAAGA-ACTGTCGC 571
Query 397 AGTTCAGAGATTCCTAGAGCAGATGAATATGGAGTAGAGGTCAAAGTCATAGCTGGAGAG 456
| |||||| || || | |||||| || | || || || ||||||||||| || |||||
Sbjct 572 A-TTCAGACATACCAAAAGCAGAACAAAACGGTGTTGAAGTCAAAGTCATTGCAGGAGAA 630
Query 457 TCAATGGGAGT-CAAATCTCCT-TTCTACACAAAAACACC-AGTCATGTTCCTGGACTTT 513
||||||||| | ||| || ||| || ||||||| |||||| | | |||||||| || |||
Sbjct 631 TCAATGGGAATTCAA-TCACCTGTT-TACACAAGAACACCTACT-ATGTTCCTCGA-TTT 686
Query 514 -ACTCTCGATCCAAGAGTTCAAACCCACCAGACCGTTCCAGAGTCATGGACCGCCTTTGC 572
|||||| | ||| ||| ||||| |||||||| |||||||| || |||| ||| |||||
Sbjct 687 CACTCTCCAACCAGGAGCTCAAATCCACCAGAATGTTCCAGAATCTTGGAACGCATTTGC 746
Query 573 CTACATTATAGA-AGGCGATGAAGGCGT-G---TTT--AGCTCCTCGGACTCTTC-CAC- 623
|||||| |||| || || |||||||| | ||| || |||||| ||||||| | |
Sbjct 747 TTACATTCTAGAGAG-CGGTGAAGGCGGCGGCGTTTTCAGTTCCTCGAACTCTTCGC-CT 804
Query 624 AGTACAAGCACATAATGTTGTGGTGTTTGGAACAGGGGACGAAG-T-T-AGCGTGTGGAA 680
| | || ||||| | |||||||||||| ||| ||||| | || | | | |||||||||||
Sbjct 805 ATTCCA-GCACACAGTGTTGTGGTGTTCGGACCAGGGAATGATGGTGTTAGCGTGTGGAA 863
Query 681 CACGTCAAGCT-CTAGATCG-TTGAGGTTCT-TGTTGATTGCAGGGGAACCGATTGGCGA 737
|| |||| || | | | | |||||||| | |||||||||| || ||||||||||| ||
Sbjct 864 CAAGTCAT-CTTCAA-AGCAATTGAGGTT-TGTGTTGATTGCTGGAGAACCGATTGGTGA 920
Query 738 GCCTGTGGTTGAGCGTGGGCCATTTGTGATGAACT-CACAAGCTGAGATTGATATGACGA 796
|| |||||| | || || || |||||||| | | |||||||||||||||||||| |
Sbjct 921 ACCGGTGGTTCAATACGGTCCGTTCGTGATGAA-TACTCAAGCTGAGATTGATATGACCA 979
Query 797 TT-AGGGACTATCG-TAATGCCCAGAATGGCTTTGAAATGGCCAAGCATTGGAGGTCA 852
|| | | | |||| || || |||||||||| |||||||||||| |||||||||||
Sbjct 980 TTGAAG-ATTATCACTA-TGGTAAGAATGGCTTCGAAATGGCCAAGTATTGGAGGTCA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5