BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324413
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2084 0.0
> AT3G59430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 10 growth stages; Has
332 Blast hits to 125 proteins in 52 species: Archae - 0; Bacteria
- 61; Metazoa - 17; Fungi - 14; Plants - 37; Viruses
- 2; Other Eukaryotes - 201 (source: NCBI BLink). | chr3:21964065-21966981
REVERSE LENGTH=1828
Length=1828
Score = 2084 bits (1128), Expect = 0.0
Identities = 1297/1376 (94%), Gaps = 22/1376 (2%)
Strand=Plus/Plus
Query 1 ATGGTCAGGAAGGAAGATGTGGATTTCTATTGCGGATTTTCAAGGAAAGAGCTTCAGAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 ATGGTCAGGAAGGAAGATGTGGATTTCTATTGCGGATTTTCAAGGAAAGAGCTTCAGAGT 113
Query 61 TTATGCAAGAAATATAATTTGCCTGCCAATAGATCAAGTTCCGATATGGCTGAATCATTG 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 TTATGCAAGAAGTATAATTTGCCTGCCAATAGATCAAGTTCCGATATGGCTGAATCATTG 173
Query 121 GCTTCTTTTTTCGAGAAACATAGTTTGAACTCGGTAGGTTTTGGGGTCCCTGTGAATCAA 180
||||||| ||||||||| ||| ||||||| ||||| ||||||||||||||| |||||||
Sbjct 174 GCTTCTTACTTCGAGAAAAATAATTTGAACCCGGTAAGTTTTGGGGTCCCTGGGAATCAA 233
Query 181 GATAGTTCAGCGACAACTTCTAGAGCACCA-CTGATTAGAACATGGAATGTGAAAAGAGG 239
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 234 GATAGTTCAGCGACAACTTCTAGAGCACCAGC-GATTAGAACATGGAATGTGAAAAGA-- 290
Query 240 TTTTGATTCTTATGGTAATAAATTGGATATACCTAGAGAGGATTATGCTCAAGGTGCAGT 299
|||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct 291 ----GATTCTTATGGTAACAAATTGGATGTACCTAGAGAGGATTATGTTCAAGGTGCAGT 346
Query 300 GGCTAGAGAGCCAGGCTTTATCCTTGGGAATAATACACCGTATCAGGAACGAAATGGAAA 359
||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 347 GGCTAGAGAACCAGGCATTATCCTTGGGAATAATACACCGTATCAGGAAAGAAATGGAAA 406
Query 360 TGATGGTTTGGTTGATTCTACATCTGTTCCTCCATATATGAGGAAATTGAATGAAAAGGG 419
|||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 407 TGATGGTTTGATTGATTTTACATCTGCTCCTCCTTATATGAGGAAATTGAATGAAAAGGG 466
Query 420 CCCAACAGCAAACTCCAAGAGAACAGATTCTCGGCTAGAAAATAGAATGAGAGATGTAGA 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 467 CCCAACAGCAAACTCCAAGAGAGCAGATTCTCGGCTAGAAAATAGAATGAGAGATGTAGA 526
Query 480 CAGTGGTGATAGTCCTAGTTCGTCTTCGTTTGAGTTTCATGTCAGTTTAGAAGAGGGTAT 539
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 527 CAGTGGTGATAATCCTAGTTCGTCTTCGTTTGAGTTTCATGTCAGTTTGGAAGAGGGTAT 586
Query 540 TAGCCTTTCAGTTGATCTAAATTTCAACCCATCAGATTGGATTAATAGCATGAGAGATGA 599
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 587 TAGCCTTTCAGTTGATCTAAATTTTAATCCATCAGATTGGATCAATAGCATGAGAGATGA 646
Query 600 GGTCAATGTATGTGATAGCATGCGTCGCAGAAAATCCCCACATTCTGATCTTGGCATTAA 659
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 647 GGTCAATGTATGTGATAGCATGCGCCGCAGAAAATCCCCACATTCTGATCTTGGC----- 701
Query 660 TAATGCTACAGAGTGTAAGAAACAGAAGAGTTCAGGGCAAGACACGGATATTCATGTAAG 719
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 702 --AT--TACAGAGTGTAAGAAACAGAAGAGTTCAGGGCAAGACACGGATGGTCATGTAAG 757
Query 720 GAGAGAATCATCTATAAGTCCTTCAGTGAAAGACAATGCTCAGTTACCTTCTGATCATCA 779
||||||||||||| ||||||| || |||||||||||||||| |||||||||||||| ||
Sbjct 758 GAGAGAATCATCTTTAAGTCCGCCAATGAAAGACAATGCTCACTTACCTTCTGATCACCA 817
Query 780 TCCCAATGGTGAACGGTCTCTAGCATCATCTGCCATAGAACCATGCAGCAGAATCAAAGA 839
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 818 TCCCAATGGTGAACGATCTCTAGCATCATCTGCCATAGAACCATGCAACAGAATCAAAGA 877
Query 840 GAGCTCAGACACTTGCAAGGaaaaaaaCGGGCTTAACTTGTCCGTACCTGATTCTTCAGG 899
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 878 GAGCTCAGACACTTGCAAGGAAAAAAGCGGGCTTAACTTGTCCATACCTGATTCTTCAGG 937
Query 900 ACCTGGCCATATTGTATCATCTTGTGTCGAATCGTATAGTAAAAGCTGCTGTGTAAATCC 959
|||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 938 ACCTTGCCAGATTGCATCATCTTGTGTCGAATCATATAGTAAAAGCTGCTGTGTAAATCC 997
Query 960 AGTTGACTTGGACTGTATTATTCCTCCAGGGAAGAAGTTGGCAAGTGAATCTGTTATGGT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 998 AGTTGACTTGGACTGTATTATTCCTCCAGGGAAGAAGTTGGCAAGTGAATCTGATATGGT 1057
Query 1020 TGCTGCAGAACAGAATCATTCAGCTGGTGATCTCCTTGTTGAAATTCCGGAAAATCCATC 1079
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1058 TGCTGCAGAACAGAATCATTCAGCTGGTGATCTCCTTGTAGAAATTCCGAAAAATCCATC 1117
Query 1080 CATGGAAAGTTTTCAAA-AGGTCGGAAACTCAAGTATTGTTATATGTCCATGGGGAGCTG 1138
||||||||| ||||||| || ||||||||||||||| ||||||||||||| |||||||||
Sbjct 1118 CATGGAAAGCTTTCAAATAG-TCGGAAACTCAAGTACTGTTATATGTCCACGGGGAGCTG 1176
Query 1139 GTTCTGAATTATCATCATCAGAAGCAGAGGCTTATCACTCAAACCAGCCGTGTTCTCCTC 1198
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1177 GCTCTGAATTATCATCATCAGAAGCAGAGGCCTATCACTCAAACCAGCCGTGTTCTCCTC 1236
Query 1199 GTAAGACCAGTAGATCCTCAACTATCTCTTCTCCAGAGTTCATCATCGATAGAGAGTCCA 1258
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1237 GTAAGACCAGTAGATCCTCGACTATCTCTTCTCCAGAGTTCATCATCGATAGAGAGTCTA 1296
Query 1259 CTAATTATTCTGAGTCATTCAAGTTCCGGTGCAATGGAGGCAAGAACATTCTGCCACCAA 1318
||| |||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct 1297 CTAGTTATTCTGAGTCATTCAAGTTCCGTTGCAATGGAGGCAA-AAG-TT-TGCCACCAA 1353
Query 1319 ATACTGAGGAGCAGGAAAAGAGCGAAGTTTTAAGTGAGCAGGTGCGGTCAGAGTGA 1374
| || ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1354 ACACGGAGGAGCAGGAAAAGAGCGAAGTTTTAAGTGAGCAGGCGCGGTCAGAGTGA 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5