BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg324413 Length=1374 Score E Sequences producing significant alignments: (Bits) Value AT3G59430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2084 0.0 > AT3G59430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 332 Blast hits to 125 proteins in 52 species: Archae - 0; Bacteria - 61; Metazoa - 17; Fungi - 14; Plants - 37; Viruses - 2; Other Eukaryotes - 201 (source: NCBI BLink). | chr3:21964065-21966981 REVERSE LENGTH=1828 Length=1828 Score = 2084 bits (1128), Expect = 0.0 Identities = 1297/1376 (94%), Gaps = 22/1376 (2%) Strand=Plus/Plus Query 1 ATGGTCAGGAAGGAAGATGTGGATTTCTATTGCGGATTTTCAAGGAAAGAGCTTCAGAGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 54 ATGGTCAGGAAGGAAGATGTGGATTTCTATTGCGGATTTTCAAGGAAAGAGCTTCAGAGT 113 Query 61 TTATGCAAGAAATATAATTTGCCTGCCAATAGATCAAGTTCCGATATGGCTGAATCATTG 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114 TTATGCAAGAAGTATAATTTGCCTGCCAATAGATCAAGTTCCGATATGGCTGAATCATTG 173 Query 121 GCTTCTTTTTTCGAGAAACATAGTTTGAACTCGGTAGGTTTTGGGGTCCCTGTGAATCAA 180 ||||||| ||||||||| ||| ||||||| ||||| ||||||||||||||| ||||||| Sbjct 174 GCTTCTTACTTCGAGAAAAATAATTTGAACCCGGTAAGTTTTGGGGTCCCTGGGAATCAA 233 Query 181 GATAGTTCAGCGACAACTTCTAGAGCACCA-CTGATTAGAACATGGAATGTGAAAAGAGG 239 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 234 GATAGTTCAGCGACAACTTCTAGAGCACCAGC-GATTAGAACATGGAATGTGAAAAGA-- 290 Query 240 TTTTGATTCTTATGGTAATAAATTGGATATACCTAGAGAGGATTATGCTCAAGGTGCAGT 299 |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| Sbjct 291 ----GATTCTTATGGTAACAAATTGGATGTACCTAGAGAGGATTATGTTCAAGGTGCAGT 346 Query 300 GGCTAGAGAGCCAGGCTTTATCCTTGGGAATAATACACCGTATCAGGAACGAAATGGAAA 359 ||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 347 GGCTAGAGAACCAGGCATTATCCTTGGGAATAATACACCGTATCAGGAAAGAAATGGAAA 406 Query 360 TGATGGTTTGGTTGATTCTACATCTGTTCCTCCATATATGAGGAAATTGAATGAAAAGGG 419 |||||||||| |||||| |||||||| |||||| |||||||||||||||||||||||||| Sbjct 407 TGATGGTTTGATTGATTTTACATCTGCTCCTCCTTATATGAGGAAATTGAATGAAAAGGG 466 Query 420 CCCAACAGCAAACTCCAAGAGAACAGATTCTCGGCTAGAAAATAGAATGAGAGATGTAGA 479 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 467 CCCAACAGCAAACTCCAAGAGAGCAGATTCTCGGCTAGAAAATAGAATGAGAGATGTAGA 526 Query 480 CAGTGGTGATAGTCCTAGTTCGTCTTCGTTTGAGTTTCATGTCAGTTTAGAAGAGGGTAT 539 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 527 CAGTGGTGATAATCCTAGTTCGTCTTCGTTTGAGTTTCATGTCAGTTTGGAAGAGGGTAT 586 Query 540 TAGCCTTTCAGTTGATCTAAATTTCAACCCATCAGATTGGATTAATAGCATGAGAGATGA 599 |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 587 TAGCCTTTCAGTTGATCTAAATTTTAATCCATCAGATTGGATCAATAGCATGAGAGATGA 646 Query 600 GGTCAATGTATGTGATAGCATGCGTCGCAGAAAATCCCCACATTCTGATCTTGGCATTAA 659 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 647 GGTCAATGTATGTGATAGCATGCGCCGCAGAAAATCCCCACATTCTGATCTTGGC----- 701 Query 660 TAATGCTACAGAGTGTAAGAAACAGAAGAGTTCAGGGCAAGACACGGATATTCATGTAAG 719 || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 702 --AT--TACAGAGTGTAAGAAACAGAAGAGTTCAGGGCAAGACACGGATGGTCATGTAAG 757 Query 720 GAGAGAATCATCTATAAGTCCTTCAGTGAAAGACAATGCTCAGTTACCTTCTGATCATCA 779 ||||||||||||| ||||||| || |||||||||||||||| |||||||||||||| || Sbjct 758 GAGAGAATCATCTTTAAGTCCGCCAATGAAAGACAATGCTCACTTACCTTCTGATCACCA 817 Query 780 TCCCAATGGTGAACGGTCTCTAGCATCATCTGCCATAGAACCATGCAGCAGAATCAAAGA 839 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 818 TCCCAATGGTGAACGATCTCTAGCATCATCTGCCATAGAACCATGCAACAGAATCAAAGA 877 Query 840 GAGCTCAGACACTTGCAAGGaaaaaaaCGGGCTTAACTTGTCCGTACCTGATTCTTCAGG 899 |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 878 GAGCTCAGACACTTGCAAGGAAAAAAGCGGGCTTAACTTGTCCATACCTGATTCTTCAGG 937 Query 900 ACCTGGCCATATTGTATCATCTTGTGTCGAATCGTATAGTAAAAGCTGCTGTGTAAATCC 959 |||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 938 ACCTTGCCAGATTGCATCATCTTGTGTCGAATCATATAGTAAAAGCTGCTGTGTAAATCC 997 Query 960 AGTTGACTTGGACTGTATTATTCCTCCAGGGAAGAAGTTGGCAAGTGAATCTGTTATGGT 1019 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 998 AGTTGACTTGGACTGTATTATTCCTCCAGGGAAGAAGTTGGCAAGTGAATCTGATATGGT 1057 Query 1020 TGCTGCAGAACAGAATCATTCAGCTGGTGATCTCCTTGTTGAAATTCCGGAAAATCCATC 1079 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 1058 TGCTGCAGAACAGAATCATTCAGCTGGTGATCTCCTTGTAGAAATTCCGAAAAATCCATC 1117 Query 1080 CATGGAAAGTTTTCAAA-AGGTCGGAAACTCAAGTATTGTTATATGTCCATGGGGAGCTG 1138 ||||||||| ||||||| || ||||||||||||||| ||||||||||||| ||||||||| Sbjct 1118 CATGGAAAGCTTTCAAATAG-TCGGAAACTCAAGTACTGTTATATGTCCACGGGGAGCTG 1176 Query 1139 GTTCTGAATTATCATCATCAGAAGCAGAGGCTTATCACTCAAACCAGCCGTGTTCTCCTC 1198 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1177 GCTCTGAATTATCATCATCAGAAGCAGAGGCCTATCACTCAAACCAGCCGTGTTCTCCTC 1236 Query 1199 GTAAGACCAGTAGATCCTCAACTATCTCTTCTCCAGAGTTCATCATCGATAGAGAGTCCA 1258 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 1237 GTAAGACCAGTAGATCCTCGACTATCTCTTCTCCAGAGTTCATCATCGATAGAGAGTCTA 1296 Query 1259 CTAATTATTCTGAGTCATTCAAGTTCCGGTGCAATGGAGGCAAGAACATTCTGCCACCAA 1318 ||| |||||||||||||||||||||||| |||||||||||||| || || ||||||||| Sbjct 1297 CTAGTTATTCTGAGTCATTCAAGTTCCGTTGCAATGGAGGCAA-AAG-TT-TGCCACCAA 1353 Query 1319 ATACTGAGGAGCAGGAAAAGAGCGAAGTTTTAAGTGAGCAGGTGCGGTCAGAGTGA 1374 | || ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1354 ACACGGAGGAGCAGGAAAAGAGCGAAGTTTTAAGTGAGCAGGCGCGGTCAGAGTGA 1409 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67670334660 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5