BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324433
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59760.1 | Symbols: OASC, ATCS-C | O-acetylserine (thiol) ly... 2052 0.0
AT2G43750.1 | Symbols: OASB, ACS1, CPACS1, ATCS-B | O-acetylser... 1033 0.0
> AT3G59760.1 | Symbols: OASC, ATCS-C | O-acetylserine (thiol)
lyase isoform C | chr3:22071948-22075416 REVERSE LENGTH=1544
Length=1544
Score = 2052 bits (1111), Expect = 0.0
Identities = 1244/1305 (95%), Gaps = 22/1305 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGCGATGATCATGGCTTCAAGGTTTAACCGCGAAGCTAAGCTCGCATCTCAAATC 60
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 72 ATGGTGGCGATGATCATGGCTTCAAGGTTTAACCGGGAAGCTAAGCTCGCATCTCAAATC 131
Query 61 TTGTCTACACTTTTGGGAAAGCGAAGCTGCAACACATCCATGGCCGCAACATCTTCCTCT 120
|||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 132 TTGTCTACACTTTTGGGAAACCGAAGCTGCTACACATCCATGGCCGCCACATCTTCCTCT 191
Query 121 GCTTTACTCCTTAATCCGTTGActtcttcttcttcttcttcttctagtctccgtcgtttc 180
|||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 192 GCTTTACTTCTTAATCCGTTGA---CTTCTTCTTCTTCTTCTTCTACTCTCCGTCGTTTC 248
Query 181 agatgctcgccggagatctcttctctctccttctCCTCCGCTCGTGTGACACCTTCAGAT 240
||||||||||| |||||||||||||||||||||||||||| | | | | | |||
Sbjct 249 AGATGCTCGCCAGAGATCTCTTCTCTCTCCTTCTCCTCCG--C-T-T-----C-T--GAT 296
Query 241 TTCTCTCTAGCGATGAAGAGGCAGAGTCGGAGTTTTGCGGATGGCTCGGAACGAGATCCG 300
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 297 TTCTCTCTAGCGATGAAGAGGCAGAGTCGGAGTTTTGCTGATGGTTCGGAACGAGATCCG 356
Query 301 TCTGTTGTCTGTGAGGCTGTTAAGAGCGAGACTGGAGCTGATGGACTCAAGATCGCTGAT 360
|||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 357 TCTGTTGTGTGTGAGGCTGTTAAGCGCGAGACTGGACCTGATGGACTCAACATCGCTGAC 416
Query 361 AATGTGTCTCAGCTCATTGGGAAAACTCCTATGGTCTACTTGAATAGTATAGCAAAGGGT 420
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 417 AATGTGTCTCAGCTCATTGGGAAAACTCCTATGGTGTACTTGAACAGTATAGCAAAAGGT 476
Query 421 TGTGTAGCAAATATTGCTGCCAAACTCGAGATCATGGAGCCATGTTGCAGTGTCAAGGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGTGTAGCAAATATTGCTGCCAAACTCGAGATCATGGAGCCATGTTGCAGTGTCAAGGAT 536
Query 481 AGGATTGGGTACAGTATGGTTACTGATGCTGAGCAAAAAGGACTTATCGCACCTGGAAAG 540
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 537 AGGATTGGGTACAGTATGGTTACTGATGCTGAGCAAAAAGGATTTATATCACCTGGAAAG 596
Query 541 AGTGTTCTTGTGGAACCTACAAGTGGAAACACGGGTATTGGCCTAGCATTCATCGCTGCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGTGTTCTTGTGGAACCTACAAGTGGAAACACGGGTATTGGCCTAGCATTCATCGCTGCT 656
Query 601 TCAAGAGGCTATAGACTTATCTTGACAATGCCATCGTCCATGAGTATGGAAAGAAGGGTT 660
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 657 TCAAGGGGCTATAGACTTATCTTGACAATGCCAGCATCCATGAGTATGGAAAGAAGGGTT 716
Query 661 CTTTTAAAGGCATTTGGAGCTGAGCTTGTATTAACAGATCCTGCTAAAGGCATGACTGGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CTTTTAAAGGCATTTGGAGCTGAGCTTGTATTAACAGATCCTGCTAAAGGCATGACTGGA 776
Query 721 GCGGTTCAGAAGGCTGAAGAAATTTTGAAAAACACTCCTGATGCCTACATGCTCCAACAG 780
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 777 GCGGTTCAGAAGGCTGAAGAGATCTTGAAAAACACTCCTGATGCATACATGCTCCAACAG 836
Query 781 TTTGACAACCCTGCGAATCCAAAGATTCATTACGAGACTACTGGTCCTGAGATCTGGGAA 840
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TTTGACAACCCTGCAAATCCAAAGATTCATTACGAGACTACTGGTCCTGAGATCTGGGAT 896
Query 841 GATACAAAGGGCAAGGTGGATATATTTGTTGCAGGAATTGGAACTGGTGGAACTATCACT 900
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 897 GATACAAAGGGCAAGGTGGATATCTTTGTTGCAGGAATTGGAACTGGTGGAACTATCACT 956
Query 901 GGTGTTGGTCGATTTATTAAAGAGAAAAATCCCAAAACGCAGGTTATTGGTGTAGAACCC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GGTGTTGGTCGATTTATTAAAGAGAAAAATCCCAAAACGCAGGTTATTGGTGTAGAACCC 1016
Query 961 ACCGAAAGCGATATACTTTCTGGTGGCAAACCAGGACCTCACAAGATTCAAGGAATTGGA 1020
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1017 ACCGAAAGCGATATACTTTCTGGTGGCAAACCGGGACCTCACAAGATTCAAGGAATTGGA 1076
Query 1021 GCTGGATTTATACCTAAGAATTTGGATCAGAAAATTATGGATGAAGTCATAGCGATTTCA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GCTGGATTTATACCTAAGAATTTGGATCAGAAAATTATGGATGAAGTCATAGCGATTTCA 1136
Query 1081 AGTGAAGAAGCTATAGAAACCGCAAAGCAACTAGCTCTTAAGGAAGGCTTGATGGTCGGT 1140
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1137 AGTGAGGAAGCTATAGAAACCGCAAAGCAACTAGCTCTTAAGGAAGGCTTGATGGTTGGT 1196
Query 1141 ATATCATCTGGAgctgctgctgctgctgcAATCAGGGTCGCGAAGAGACCTGAGAATGCT 1200
||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||||||
Sbjct 1197 ATATCATCTGGAGCTGCAGCTGCTGCTGCAATCAAGGTGGCTAAGAGACCTGAGAATGCT 1256
Query 1201 GGAAAACTCATAGCTGTAAGTGTTTTC--G--CTTCGGGGAGCGATATCTATCAACCCCG 1256
||||||||||||||||| ||||||| | |||||||||| |||||||||| ||||||
Sbjct 1257 GGAAAACTCATAGCTGT---TGTTTTCCCGAGCTTCGGGGAGAGATATCTATCGACCCCG 1313
Query 1257 CTGTTCCAGTCTATCCGGGAAGAGGTGGAGAAAATGCAGCCTGAG 1301
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CTGTTCCAGTCTATCCGGGAAGAGGTGGAGAAAATGCAGCCTGAG 1358
> AT2G43750.1 | Symbols: OASB, ACS1, CPACS1, ATCS-B | O-acetylserine
(thiol) lyase B | chr2:18129435-18132552 REVERSE LENGTH=1578
Length=1578
Score = 1033 bits (559), Expect = 0.0
Identities = 845/982 (86%), Gaps = 23/982 (2%)
Strand=Plus/Plus
Query 332 CTGGAGCTGATGGACTCAAGATCGCTGATAATG-TGTCTCAGCTCATTGGGAAAACTCCT 390
|||| | ||| || ||||| ||||| ||||| | | ||||||| ||||||||||||||
Sbjct 433 CTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCG-CTCAGCTTATTGGGAAAACTCCG 491
Query 391 ATGGTCTACTTGAATAGTATAG-CAAAGGGTTGTGTAGCAAATATTGCTGCCAAACTCGA 449
||||| |||||||| | | ||| | ||||| ||||| |||| | ||||||| || || ||
Sbjct 492 ATGGTGTACTTGAACAATGTAGTC-AAGGGCTGTGTTGCAAGTGTTGCTGCTAAGCTTGA 550
Query 450 GATCATGGAGCCATGTTGCAGTGTCAAGGATAGGATTGGGTACAGTATGGTTACTGATGC 509
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 551 GATCATGGAACCATGTTGCAGTGTCAAGGATAGGATTGGGTACAGTATGATTACTGATGC 610
Query 510 TGA-GCAAAAAGGACTTATCGCACCTGGAAAGAGTGTTCTTGTGGAACCTACAAGTGGAA 568
||| | | ||||||||||| |||||||||||||||||||||||||| |||| ||||| |
Sbjct 611 TGAAG-AGAAAGGACTTATAACACCTGGAAAGAGTGTTCTTGTGGAATCTACGAGTGGGA 669
Query 569 ACAC-GGGTATTGGCCTAGCATTCATCGCTGCTTCAAGAGGCTATAGACTTATCTTGACA 627
|||| ||| |||||||| |||||||| |||||||||| |||||||| ||||||||||||
Sbjct 670 ACACAGGG-ATTGGCCTTGCATTCATTGCTGCTTCAAAAGGCTATAAACTTATCTTGACG 728
Query 628 ATGCCAT-CGTCCATGAGTATGGAAAGAAGGGTTCTTTTAAAGGCATTTGGAGCTGAGCT 686
||||| | ||||||||||| ||||||| |||||||||| | ||||||||||||||||||
Sbjct 729 ATGCC-TGCGTCCATGAGTTTGGAAAGGCGGGTTCTTTTGAGGGCATTTGGAGCTGAGCT 787
Query 687 TGTATTAACAGATCCTGCTAAAGGCATGACTGGAGCGGTTCAGAAGGCTGAAGAAATTTT 746
||| ||||| || ||||| ||||| ||||||||||| ||||||||||||||||||| ||
Sbjct 788 TGTGTTAACTGAACCTGCAAAAGGTATGACTGGAGCAATTCAGAAGGCTGAAGAAATCTT 847
Query 747 GAAAAACACTCCTGATGCCTACATGCTCCAACAGTTTGACAACCCTGCGAATCCAAAGAT 806
|||||| ||||| || ||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 848 GAAAAAAACTCCCAATTCCTACATGCTCCAACAGTTTGACAACCCTGCCAATCCCAAGAT 907
Query 807 TCATTACGAGACTACTGGTCCTGAGATCTGGGAAGATACAA-AGGGCAAGGTGGATATAT 865
|||||| ||||| |||||||||||||| ||||||||||||| ||| ||| | |||||||
Sbjct 908 TCATTATGAGACGACTGGTCCTGAGATTTGGGAAGATACAAGAGG-CAAAATCGATATAT 966
Query 866 TTGTTGCAGGAATTGGAACTGGTGGAACTATCACTGGTGTTGGTCGATTTATTAAAGAGA 925
| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 967 TGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGGTGTTGGTCGATTCATTAAAGAAA 1026
Query 926 -AAAATCCCAAAACGCAGGTTATTGGTGTAGAACCCACCGAAAGCGATATACTTTCTGGT 984
|||| || || | ||||||||||||| |||||||| ||||| | |||||||||||||
Sbjct 1027 GAAAA-CCTGAATTGAAGGTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGT 1085
Query 985 GGCAAACCAGGACCTCACAAGATTCAAGGAATTGGAGCTGGATTTATACCTAAGAATTTG 1044
|| ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1086 GGAAAACCCGGACCTCACAAGATTCAAGGAATTGGAGCTGGATTTGTACCCAAGAATTTG 1145
Query 1045 GATCAGAAAATTATGGATGAAGT-CATAGCGATTTCAAGTGAAGAAGCTATAGAAACCGC 1103
|||| | ||| | |||||| | |||||||||||| ||||| |||||||| |||||| |
Sbjct 1146 GATCTGGCTATTGTAGATGAA-TACATAGCGATTTCCAGTGAGGAAGCTATTGAAACCTC 1204
Query 1104 AAAGCAACTAGCTCTTAAGGAAGGCTTGATGGTCGGTATATCATCTGGAgctgctgctgc 1163
|||||||||||||| ||||||||||| |||| |||||||| |||||||||||||||||
Sbjct 1205 GAAGCAACTAGCTCTCCAGGAAGGCTTGTTGGTTGGTATATCTTCTGGAGCTGCTGCTGC 1264
Query 1164 tgctgcAATC-AGGGTCGCGAAGAGACCTGAGAATGCTGGAAAACTCATAGCTGTAAGTG 1222
|||||||||| ||| | || ||||||||||| ||||| || ||||||||||| || |||
Sbjct 1265 TGCTGCAATCCAGGTT-GCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCCGTT-GTG 1322
Query 1223 TTTTCG--CTTCGGGGAGCGATATCTATCAACCCCGCTGTTCCAGTCTATCCGGGAAGAG 1280
|| || ||||||||| || || || || |||| ||| |||||||| || || ||||||
Sbjct 1323 TTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAGTCGATTCGAGAAGAG 1382
Query 1281 GTG-GAGAAAATGCAGCCTGAG 1301
|| ||| |||||||||| |||
Sbjct 1383 -TGCGAGCAAATGCAGCCCGAG 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5