BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324441
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59845.1 | Symbols: | Zinc-binding dehydrogenase family pro... 667 0.0
AT5G37940.1 | Symbols: | Zinc-binding dehydrogenase family pro... 145 6e-34
> AT3G59845.1 | Symbols: | Zinc-binding dehydrogenase family protein
| chr3:22106243-22107862 REVERSE LENGTH=1296
Length=1296
Score = 667 bits (361), Expect = 0.0
Identities = 588/687 (86%), Gaps = 58/687 (8%)
Strand=Plus/Plus
Query 4 TCAATGTTCCTCTCAGCTACTATACTGGAATCCTCGGTTAGTATGATAGGTTTAACTGCT 63
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 460 TCAATGTTCCTCTCAGCTACTATACTGGAATCCTC-G---GTATGATAGGTTTAACTGCT 515
Query 64 TATGCCGGGTTTTACGAGACATATTCACCTAAAAAAGGAGAAACAGTGTTTGTCTCTGCG 123
|| |||||||||| ||||| || ||||||||| |||||||| |||||||| || |||||
Sbjct 516 TACGCCGGGTTTTTCGAGATATGTTCACCTAAGAAAGGAGACACAGTGTTCGTGTCTGCT 575
Query 124 GCTTCTGGTGCGGTTGGACAGCTCGTGGGTCAGTTTGCTAAGTTGATGGGCTGCTATGTT 183
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 576 GCTTCTGGCGCGGTTGGACAGCTCGTGGGTCAGTTTGCAAAGTTGATGGGCTGCTATGTT 635
Query 184 GTTGGAAGTGCCGGAAGTAAACAAAAGGTTGATCTCCTGCTGAACAAATTTGGTTACGAT 243
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 636 GTTGGAAGTGCCGGAAGTAAACAAAAGGTCGATCTCCTGCTGAACAAATTCGGTTACGAT 695
Query 244 GAAGCATTCAATTACAAGGAAGAGCCTGACCTTGAAGAGGTTCTTATTTGGCTTCTTATA 303
|| ||||||||||| |||||||||||||||||| || | | || ||| |
Sbjct 696 GATGCATTCAATTATAAGGAAGAGCCTGACCTT---GA----C----TCCGC--CTT-GA 741
Query 304 ATTCA-GTGTTTCCCAAAAGGTATTGACATATACTTTGAGAACGTGGGAGGCAAAATGCT 362
| | |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 A--GAGGTGTGTACCAAAAGGTATTGACATATACTTTGAGAACGTGGGAGGCAAAATGCT 799
Query 363 TGATGCGG-T-T-C-T-AC-T--TAAC--AT-GA--AACCG-TATATATGGCA-GA-ATC 406
||| |||| | | | | || | ||| || || || || | ||| ||| | || |||
Sbjct 800 TGACGCGGTTCTACTTAACATGAAAACGTATGGACGAATCGCTGTATGTGGGATGATATC 859
Query 407 GCTGT---AT-GTGGGA--TGA-TC---TCT-C-AAATCTACCTGACATCATATTCAAGA 454
| || || || | || | | | | ||||||||||||||||||||||||||
Sbjct 860 TCAGTACCATCTTGAAACCAGAGACAGGT-TACAAAATCTACCTGACATCATATTCAAGA 918
Query 455 AGATAAGGATGCAAGGGTTTGCTGT-TTATGACTTCATAGTCATAGATAGATTCCCAAAG 513
||||||||||||||||||||||| | ||||||||| || | | |||||||||||||||
Sbjct 919 AGATAAGGATGCAAGGGTTTGCT-TCTTATGACTT--TA-T-A--GATAGATTCCCAAAG 971
Query 514 TTCTTGGAGTTTGTTATTCCCTACATAAAAGAAGAGAAATTAACATATGTGGAAGACATT 573
||||||||||||||| |||||||||||||||||||||||||| | || ||||||||||||
Sbjct 972 TTCTTGGAGTTTGTTCTTCCCTACATAAAAGAAGAGAAATTAGCGTACGTGGAAGACATT 1031
Query 574 GTTGAAGGACTCGAGAACGGTCCTGCTGCTCTTGTAGGACTTCTCCATGGACAAAACGTT 633
||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1032 GTTGAAGGACTCGAGAATGGTCCTGCTGCTCTTGTAGGACTTCTTCATGGAAAAAACGTT 1091
Query 634 GGTAAGCAAGTTCTCAAGGTTGCTTGA 660
|||||||||||||||||||||||||||
Sbjct 1092 GGTAAGCAAGTTCTCAAGGTTGCTTGA 1118
> AT5G37940.1 | Symbols: | Zinc-binding dehydrogenase family protein
| chr5:15107296-15108966 FORWARD LENGTH=1224
Length=1224
Score = 145 bits (78), Expect = 6e-34
Identities = 283/378 (75%), Gaps = 29/378 (8%)
Strand=Plus/Plus
Query 58 ACTGCTTATGCCGGGTTTTACGAGACATATTCACCTAAAAAAGGAGAAACAGTGTTTGTC 117
||||| |||| ||||||||||||| || ||| || || |||||||| || || |||||
Sbjct 464 ACTGCGTATGTTGGGTTTTACGAGATATGTTCTCCGAAGAAAGGAGAGACTGTATTTGTA 523
Query 118 TCTGCGGCTTCTGGTGCGGTTGGACAGCTCGTGGGTCAGTTTGCTAAGTTGATGGGCTGC 177
|| || || ||||| || || || || || ||||| |||||||| ||| || ||| |||
Sbjct 524 TCAGCTGCATCTGGCGCAGTAGGTCAACTTGTGGGACAGTTTGCGAAGATGGCGGGATGC 583
Query 178 TATGTTGTTGGAAGTGCCGGAAGTAAACAAAAGGTTGATCTCCTGCTGA-AC-AAATTTG 235
||||| |||||||| || | |||||| | ||||||||||| || | | || || ||||
Sbjct 584 TATGTCGTTGGAAGCGCTAGCAGTAAAGAGAAGGTTGATCTTCT-C-AAGACTAAGTTTG 641
Query 236 GTTACGATGAAGCATTCAATTACAAGGAAGAGCCTGACCTTGAAGAGGTTCTTATTTGGC 295
| || ||||| || |||||||| |||| | | || || ||| ||||| | ||
Sbjct 642 GGTATGATGACGCTTTCAATTATAAGG-A-A----GA-----AA-AGGATCTTA-GT-GC 687
Query 296 T-TCTTATAATTCA-GTGTTTCCCAAAAGGTATTGACATATACTTTGAGAACGTGGGAGG 353
| | || || | |||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 688 TGCCCTA-AA--GAGGTGTTTCCCAGAAGGAATAGACATATACTTTGAGAACGTGGGAGG 744
Query 354 CAAAATGCTT-GATGCGGTTCTACTTAACATGAAACCGTATATATGGCAGAATCGCTGTA 412
||||||| || || || || || | ||||||| | | | ||||| ||||||| |
Sbjct 745 CAAAATG-TTAGACGCAGTGCTCCAAAACATGAG---G-ACACATGGCCGAATCGCAGCG 799
Query 413 TGTGGGATGATCTCTCAA 430
||||| ||||| || |||
Sbjct 800 TGTGGAATGATTTCACAA 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5