BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg324444

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G59880.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   512    1e-144


> AT3G59880.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: plasma membrane; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G44010.1); Has 20 
Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr3:22120969-22121700 
FORWARD LENGTH=732
Length=732

 Score =  512 bits (277),  Expect = 1e-144
 Identities = 327/352 (93%), Gaps = 0/352 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGTTTAAGGCTATGAGGAAAAACCGGACCCGTCGGCGTTATGAGTGTCTCTCTTCC  60
            ||||||||||||||||||||||||||| |||||||   |||||| |||||||||||||||
Sbjct  119  ATGGCGTTTAAGGCTATGAGGAAAAACAGGACCCGAAAGCGTTACGAGTGTCTCTCTTCC  178

Query  61   TCCGCCGGCACGACTAAAGATTCCAACGACGACTACGACTTCTTCCCCTTCGCCGCTAAA  120
            |||||||||||||||||||| ||| ||||||| | |||||||||||||||||||||||||
Sbjct  179  TCCGCCGGCACGACTAAAGACTCCTACGACGATTCCGACTTCTTCCCCTTCGCCGCTAAA  238

Query  121  CCCGAAAACTCCGTTGTATCTCGACCCTCATCGTCTTTTGATCATATAGAGATGAATAAC  180
             ||||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  239  TCCGATCACTCCGTTGTATCTCGACCTTCGTCGTCTTTTGATCATATAGAGATGAATAAC  298

Query  181  GTTGGTGTTCAACAACGTCACCGCCGTGGATGGTCGGTTGGAGATTTCTCATCCATGTCT  240
            |||| ||||||||||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct  299  GTTGATGTTCAACAACGTCACCACCGTGGATGGTCAGTGGGAGATTTCTCATCCATGTCT  358

Query  241  TGTCGTGAAGGAAGAAGATCTGGTGCCGACGGCGGAGAAACCGGTTTTTCTCCGTCCCGG  300
            ||||| ||||||| ||||||||||| |||||||||||| | ||||||||||||||| |||
Sbjct  359  TGTCGGGAAGGAAAAAGATCTGGTGTCGACGGCGGAGATATCGGTTTTTCTCCGTCGCGG  418

Query  301  CGAGGACAGCTTGTGAGGAATAGAAGCCATAGATTGTTCTCTTGTGTCTCAG  352
            |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  419  CGAGGACAACTTGTGAGGAATAGAAGCCATAGATTGTTCTCTTGTGTCTCAG  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5