BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324496
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60440.1 | Symbols: | Phosphoglycerate mutase family protei... 987 0.0
AT3G60450.1 | Symbols: | Phosphoglycerate mutase family protei... 551 4e-156
AT3G60420.2 | Symbols: | Phosphoglycerate mutase family protei... 398 5e-110
> AT3G60440.1 | Symbols: | Phosphoglycerate mutase family protein
| chr3:22337793-22339446 FORWARD LENGTH=1204
Length=1204
Score = 987 bits (534), Expect = 0.0
Identities = 613/651 (94%), Gaps = 5/651 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTCTACTAAATC---CAATCCCGATGGCTACCAAAATATCTTAATGATGCGTCAC 57
||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 97 ATGGAGTCTGCTAAATCAAAAAATCCCGATAGCTACCAAAATATCTTGATGATGCGTCAC 156
Query 58 GGTGATCGCATTGACCAAATCAATCCACTCTGGCTCGATACAGCTGCGAGACCTTGGGAT 117
||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 157 GGTGATCGCATTGACAAAATCGATCCACTCTGGCTTGATACAGCTGCGAGACCTTGGGAT 216
Query 118 CCTCCTCTCGTTCAAGACGGTATGGTTCGGGCGTTTCGAACTGGTCAACGGATTCGATCA 177
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 217 CCTCCTCTCGTTCAAGACGGTATGGTTCGTGCGTTTCAAACTGGTCAACGGATTCGATCT 276
Query 178 CAGATCCAATTTCCGATTCACCGTGTCTTCGTCTCCCCTTTTTTCCGATGTATCCAGACT 237
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 277 CAGATCCAATTTCCGATTCACCGTGTCTTCGTCTCTCCTTTTATCCGATGTATACAGACT 336
Query 238 GCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTTGATTTCGATCCCAACGCTACGTCGTCT 297
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 337 GCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTCGATTTCGATCCTAACGCTACTTCGTCC 396
Query 298 AAAGACGTCGTTTCAATCGATAAATCTAAGCTCAAGGTTTCTATTGAGTTTGGCTTGAGT 357
||||||||| |||||||||||||| |||||| |||||||| ||||| ||||| ||||||
Sbjct 397 AAAGACGTCACTTCAATCGATAAATATAAGCTTAAGGTTTCCATTGAATTTGGTTTGAGT 456
Query 358 GAGATGCTGAATTCAATCT-CTATTAAGCCTGAGATTGCTCCCAAAGATGGGAAATTCGA 416
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 457 GAGATGCTGAATTCAAT-TGCTATTAAGCCTGAGATTGCTCCCAAAGATGGGAAATTCGA 515
Query 417 TTTCATGATTTCAGATCTTGAAGCTATGTTTCCTCATGGAATGGTTGATCATAGTGTAGA 476
||||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||
Sbjct 516 TTTCATGATTTCAGAACTTGAAGCGATTTTTCCTGATGGAATGGTTGATCATAGTGTAGA 575
Query 477 TCCTGTTTATAAAGAGATGCCACAATGGGAAGAGACTGTGGAAGGCTGCACAGATAGGTT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 576 TCCTGTTTATAAAGAGATGCCACAATGGGAAGAGACTGTGGAAGGCTGCACAGATAGATT 635
Query 537 TCTTAATTTGATTAAGACTCTTGCTGATAAGTATCCTTCAGAGAACTTGCTCTTAGTCAC 596
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 636 TCTTAGTTTGATAAAGACTCTTGCTGATAAGTATCCTTCAGAGAACTTGCTCTTGGTCAC 695
Query 597 TCACGGGGAAGGAGTAAGGACTACATTTGCAACCTTTAAAGGCGTAGATGT 647
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 696 TCACGGGGAAGGAGTAAGGACTACATTTGCAACCTTTAAAGGCGTACATGT 746
> AT3G60450.1 | Symbols: | Phosphoglycerate mutase family protein
| chr3:22340957-22342315 FORWARD LENGTH=978
Length=978
Score = 551 bits (298), Expect = 4e-156
Identities = 527/636 (83%), Gaps = 21/636 (3%)
Strand=Plus/Plus
Query 1 ATGGAGTCTACTAAATCCAA--TC-CCGATGGCTACCAAAATATCTTAATGATGCGTCAC 57
||||||||| | ||||| || || ||||||||||||||| ||||| | |||||||||
Sbjct 26 ATGGAGTCTCCCAAATCTAACGTCGACGATGGCTACCAAAACATCTTCGTCATGCGTCAC 85
Query 58 GGTGATCGCATTGACCAA-ATCAATCCACTCT-GG-CTCGATACAGCTGCGAGACCTTGG 114
|||||||| || || ||| || | ||||||| || || | || || | ||||||||||
Sbjct 86 GGTGATCGAATCGA-CAATTTCGAGCCACTCTGGGTTTC-A-ACCGCCGAGAGACCTTGG 142
Query 115 GATCCTCCTCTCGTTCAAGACGGTATGGTTCGGGCGTTTCGAACTGGTCAACGGATTCGA 174
||||| ||| | ||||||||||||||| |||| ||||||||||| |||||| |||| |||
Sbjct 143 GATCCACCTTTGGTTCAAGACGGTATGATTCGAGCGTTTCGAACCGGTCAAAGGATCCGA 202
Query 175 TCACAGATCCAATTTCCGATTCACCGTGTCTTCGTCTCCCCTTTTTTCCGATGTATCCAG 234
|| |||||| || ||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 203 TCTCAGATCGGGTTCCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGATGTCTTCAG 262
Query 235 ACTGCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTTGATTTCGATCCCAACGCTACGTCG 294
|| |||||||||||| |||| ||||| || ||||| || ||||||| ||||| | |||
Sbjct 263 ACAGCTTCCGAAGTCGTCGCAGCTCTATCAGCCGTCAATGTCGATCCTAACGCCATGTCT 322
Query 295 TCTAAAGACGTCGTTTCAATCGATAAATCTAAGCTCAAGGTTTCTATTGAGTTTGGCTTG 354
|| ||||||||| ||| || ||||||||||||||||||||||||||||| || || |||
Sbjct 323 TCCAAAGACGTCCCTTCCATTGATAAATCTAAGCTCAAGGTTTCTATTGAATTAGGTTTG 382
Query 355 AGTGAGATGCTGAATTCAATCTCTATTAAGCC-TGAGATTGCTCCCAAAGATGGGAAATT 413
|||||||| |||| ||| | |||| ||| | |||| ||||||| ||||||||||||||
Sbjct 383 TGTGAGATGTTGAACTCAGTGGCTAT-AAGGCGTGAGCTTGCTCCTAAAGATGGGAAATT 441
Query 414 CGATTTCA-TGATTTCAGATCTTGAAGCTATGTTTCCTCATGGAATGGTTGATCATAGTG 472
|| |||| || |||||||| ||||| ||||||||||| | |||||||||||||||| ||
Sbjct 442 TGACTTCACTG-TTTCAGATATTGAAACTATGTTTCCTGAGGGAATGGTTGATCATAATG 500
Query 473 TAGATCCTG-TTTATAAAGAGATGCC-ACAATGGGAAGAGACTGTGGAAGGCTGCACAGA 530
| ||| || ||||||||||| |||| | ||||||||||| |||||||||| |||| |||
Sbjct 501 TGGATA-TGGTTTATAAAGAGTTGCCTA-AATGGGAAGAGTCTGTGGAAGGTTGCAGAGA 558
Query 531 TAGGTTTCTTAAT-TTGATTAAGACTCTTGCTGATAAGTATCCTTCAGAGAACTTGCTCT 589
| | | | |||| ||| | ||| |||||||||||||||||||| ||||||||||||||
Sbjct 559 TCGATATGTTAAAGTTG-TAAAGGCTCTTGCTGATAAGTATCCTGAAGAGAACTTGCTCT 617
Query 590 TAGTCACTCACGGGGAAGGAGTAAGGA-CTACATTT 624
|||| || |||||||||||||| ||| ||||||||
Sbjct 618 TAGTAACCCACGGGGAAGGAGTT-GGAACTACATTT 652
> AT3G60420.2 | Symbols: | Phosphoglycerate mutase family protein
| chr3:22334431-22337494 FORWARD LENGTH=1232
Length=1232
Score = 398 bits (215), Expect = 5e-110
Identities = 492/622 (79%), Gaps = 33/622 (5%)
Strand=Plus/Plus
Query 1 ATGGAGTCTACTAAATCCAATC-CCGATGGCTACCAAAATATCTTAATGATGCGTCACGG 59
|||||||| |||||| ||||| || |||| |||||||| || | |||||||||| ||
Sbjct 16 ATGGAGTCGGCTAAAT-CAATCATCGGTGGCCACCAAAATGTCATCCTGATGCGTCATGG 74
Query 60 TGATCGCA-TTGACCAA-ATCAATCCACTCTGG-C-TCGATACAGCTGCGAGACCTTGGG 115
|||||| | | || ||| || | ||||||||| | || | |||||||||||||| ||||
Sbjct 75 TGATCG-ACTCGA-CAATTTCGAGCCACTCTGGACTTC-A-ACAGCTGCGAGACCGTGGG 130
Query 116 ATCCTCCTCTCGTTCAAGACGGTATGGTTCGGGCGTTTCGAACTGGTCA-ACGGATTCGA 174
|||| || || | ||||||||||| || |||||| ||| |||||||||| | | || ||
Sbjct 131 ATCCACCGCTTGCTCAAGACGGTAAGGATCGGGCCTTTAGAACTGGTCAGA-GAATCCGG 189
Query 175 TCACAGA-TCCAATTTCCGATTCACCGTGTCTTCGTCTCCCCTTTTTTCCGATGTATCCA 233
|| || | | ||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 190 TCTCA-ACTTGGGGTTCCGATTCACCGTGTCTTCGTCTCCCCTTTCCTCCGCTGCATCCA 248
Query 234 GACTGCTTCCGAAGTCATCGCTGCTCTCTCCGCCGTTGATTTCGATCCCAACGCTACGTC 293
||| |||||||||||| | || || ||||| ||||| ||||||||||||| |||| |||
Sbjct 249 GACCGCTTCCGAAGTCGTTGCCGCCCTCTCAGCCGTCGATTTCGATCCCATTGCTATGTC 308
Query 294 GTCTAAAGACGT-CGTTTCAATCGATAA-ATCTAAGCTCAAGGTTTCTATTGAGTTTGGC 351
||||||||||| | |||| ||||| || | ||||| ||||||| ||||||| |||||
Sbjct 309 ATCTAAAGACGTGC-TTTCCATCGACAATA-CTAAGATCAAGGTGGCTATTGAATTTGGA 366
Query 352 TTGAGTGAGATGCTGAATTCAATCTCTATTAAGCCTGA-GATTGCTCCCAAAGATGGGAA 410
||| ||||| | | | |||||| ||||||| ||| | |||||||||||||||||||
Sbjct 367 TTGTCCGAGATACCGCACCCAATCTTTATTAAGAGTGAAG-TTGCTCCCAAAGATGGGAA 425
Query 411 ATTCGATTTCATGATTTCAGATCTTGAAGCTATGTTTCCTCATGGAATGGTTGAT-CATA 469
||| ||||||| |||||||||||||||||||||||||||| | |||| || ||| | ||
Sbjct 426 ATTTGATTTCAAGATTTCAGATCTTGAAGCTATGTTTCCTGAAGGAACAGTGGATTC-TA 484
Query 470 GTGTAGATCCTG-TTTATAAAGAGATGCCACAATGGGAAGAGA-CTGTGGAAGGCTGCAC 527
||| ||| || ||||||||||| ||||| |||||| ||| | ||| ||| ||
Sbjct 485 ATGTGGATA-TGGTTTATAAAGAGGTGCCAGAATGGGGAGA-ATCTGCACAAGCCTTTG- 541
Query 528 AG-ATAGGT-TTCTTAATTTGATT-AAGACTCTTGCTGATAAGTATCCTTCAGAGAACTT 584
|| || | | || | || | | |||| |||||| || ||||||||||| ||||||||
Sbjct 542 AGGATCGATATTAT-AAGAC-AGTGAAGATTCTTGCGGAGAAGTATCCTTCTGAGAACTT 599
Query 585 GCTCTTAGTCACTCAC-GGGGA 605
||||||||||||||| |||||
Sbjct 600 GCTCTTAGTCACTCATTGGGGA 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37323971221
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5