BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg324506

Length=795
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60570.1 | Symbols: ATEXPB5, EXPB5, ATHEXP BETA 1.3 | expans...   704    0.0  
  AT3G60565.1 | Symbols:  | transposable element gene | chr3:2238...   121    1e-26


> AT3G60570.1 | Symbols: ATEXPB5, EXPB5, ATHEXP BETA 1.3 | expansin 
B5 | chr3:22391247-22392463 FORWARD LENGTH=759
Length=759

 Score =  704 bits (381),  Expect = 0.0
 Identities = 419/438 (96%), Gaps = 0/438 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTTCCTCATCTCTCAAATGTTTGTCTTCTATCGTTGTTCTTACAACTTTCTTTGCA  60
            |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct  1    ATGGCTTCCTCATCTCTCAAATGTTTTTCTTTTATCGTTGTTCTTACAACTTTCTTTGCA  60

Query  61   ATCTCATTGAAGCCTTGTTCTGGCCACAATAAAACCCACTGGAACACCGCCGGCATCACT  120
            |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| 
Sbjct  61   ATCTCATTGAAGCCATGTTATTGCCACAATAAAACCCACTGGAACACCGCCGGCATCACG  120

Query  121  TGGTATGGCGACCGCGAAGGTCCTGGCAGCACAGGAGGAGCTTGTGGATATGGTGATGCA  180
            |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  121  TGGTATGGCGACCGAGAAGGTCCTGGCACCACAGGAGGAGCTTGTGGATATGGTGATGCA  180

Query  181  GTGGCAAAGCACCCGTACAGATGTATGGTTTCAGCCGGAGGACCTTCATTGTTCAAAGAT  240
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  181  GTGGCAAAACACCCGTACAGATGTATGGTTTCAGCCGGAGGACCTTCATTGTTCAAAGAC  240

Query  241  GGAAAGGGTTGTGGGGCATGTTACAGGCTTAAATGCGACCATCCGTTGTGCACGAAAAAG  300
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GGAAAGGGTTGTGGGGCTTGTTACAGGCTTAAATGCGACCATCCGTTGTGCACGAAAAAG  300

Query  301  CCGATTAAGGTGATGATATCGGATGAGTGTCCCGGCTGTACGAAGGAGGCTGTTCATTTT  360
            ||||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct  301  CCGATCAAGGTGATGATATCGGATGAGTGTCCCGGCTGCACGAAGGAGTCTGTCCATTTT  360

Query  361  GATCTTAGTGGCAAGGCCTTTGGTGCATTGGCCAAACGAGGCAAGGGCGATCAACTACGC  420
            |||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  361  GATCTTAGCGGTAAGGCCTTTGGTGCATTGGCCAAACGTGGCAAGGGAGATCAACTACGC  420

Query  421  AACCTTGGAGAACTAAAA  438
            ||||||||||||||||||
Sbjct  421  AACCTTGGAGAACTAAAA  438


 Score =  508 bits (275),  Expect = 2e-143
 Identities = 305/320 (95%), Gaps = 0/320 (0%)
 Strand=Plus/Plus

Query  476  CTAAGATCGCTATCCATGTCGACTCCGGAGCAAATCCTTACTACATGTCATTCGCAGTTA  535
            ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct  440  CTATGATCGCTATCCATGTCGACGCCGGAGCAAATCCTTACTACATGTCATTCGCGGTTA  499

Query  536  AGTTTGCAAACGGTGATGGGAACTTCGCCTGCATCGAGGTCCAACCGGCAGGAGGAAAGT  595
            |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct  500  AGTTTGCAAACGGTGATGGGAACTTCGCCTGCATTGAGGTCCAACCGGCCGGAGGACAGT  559

Query  596  ATTTGAAAATGGAGGAAATGAGATCCGCTGTTTGGAGACTAAGCCCTGGTGTTCCTTTGA  655
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  560  ATATGAAAATGGAGGAAATGAGATCCGCTGTTTGGAGACTAAGCCCTGGTGTTCCTTTGA  619

Query  656  AGGGTCCGTTCAACATCAGGCTTACCTCCGCGGTCTCTGGTAAGAAGATCGTTGCGAAAG  715
            | ||||||||||||||||||||||||||||| || || |||||||||||| |||||||||
Sbjct  620  AAGGTCCGTTCAACATCAGGCTTACCTCCGCCGTGTCCGGTAAGAAGATCATTGCGAAAG  679

Query  716  GCGTTATCCCTGAAAAGTGGAGCCCTGGTGCTATTTACCACTCTAAGGTTAACTTCCCCG  775
            |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct  680  GCGTTATCCCGGAAAAGTGGAGTCCTGGTGCTATTTACCATTCTAAGGTTAACTTCCCCG  739

Query  776  TTCAAAGGAAGCAGAAATGA  795
            ||||||||||||||||||||
Sbjct  740  TTCAAAGGAAGCAGAAATGA  759


> AT3G60565.1 | Symbols:  | transposable element gene | chr3:22383922-22389906 
REVERSE LENGTH=5985
Length=5985

 Score =  121 bits (65),  Expect = 1e-26
 Identities = 75/80 (94%), Gaps = 0/80 (0%)
 Strand=Plus/Minus

Query  76    TGTTCTGGCCACAATAAAACCCACTGGAACACCGCCGGCATCACTTGGTATGGCGACCGC  135
             |||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  5982  TGTTATTGCCACAATAAAACCCACTGGAACACCGCCGGCATCACGTGGTATGGCGACCGA  5923

Query  136   GAAGGTCCTGGCAGCACAGG  155
             ||||||||||||| ||||||
Sbjct  5922  GAAGGTCCTGGCACCACAGG  5903



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38680293190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5