BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324510
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60620.1 | Symbols: CDS5 | cytidinediphosphate diacylglycero... 822 0.0
> AT3G60620.1 | Symbols: CDS5 | cytidinediphosphate diacylglycerol
synthase 5 | chr3:22406406-22408597 FORWARD LENGTH=1689
Length=1689
Score = 822 bits (445), Expect = 0.0
Identities = 487/508 (96%), Gaps = 0/508 (0%)
Strand=Plus/Plus
Query 116 AGGAGGAACACAACAGAGATCAAGAATTGCAAAATGTTGAAGACGATTCGAGTTTAGATG 175
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 370 AGGAGGAACACAACATAGATCAAGAATTGCAAAATGTTGAAGAAGATTCGAGTTTAGATG 429
Query 176 ATCAGAAGCAGAAATCTAGAAGCCAGTTTAAGAAAAGAGTGATTTTTGGTTTAGGAATTG 235
|||||||||| ||||||||||||||||||||||||||||| | ||| ||| |||||||||
Sbjct 430 ATCAGAAGCAAAAATCTAGAAGCCAGTTTAAGAAAAGAGTAACTTTCGGTCTAGGAATTG 489
Query 236 GATTGTCTGTTGGAGGTATTGTATTAGCTGGAGGATGGGTATTCACAGTAGCAGTAGCAG 295
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GATTGTCTGTAGGAGGTATTGTATTAGCTGGAGGATGGGTATTCACAGTAGCAGTAGCAG 549
Query 296 CTGCAGTTCTTCTAAGTGCCCGGGAATATTTCGAGCTGGTGAGAAGTAAAGGAATTGCTC 355
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 CTGCGGTTCTTCTAAGTGCCCGGGAATATTTCGAGCTGGTGAGAAGTAAAGGAATTGCTC 609
Query 356 AAGGAATGACACCTCCTCCACGATATCTTTCTAGAGTCTGCTCGGTTATATGTGCTCTTA 415
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 610 AAGGAATGACACCTCCTCCACGATATCTTTCTAGAGTCTGCTCCATTATCTGTGCTCTTA 669
Query 416 TGCCCATACTTACATTGTATTTTGGTCATATAGATATCTCGGTGACATCAGCGGCGTTTG 475
||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 670 TGCCCATACTTACATTGTATTTTGGTCATATAGATATCTCGATAACTTCAGCGGCGTTTG 729
Query 476 TTGTTGCAATGGCATTGTTGTTACAAAGAGGAAACCCGCGTTTTTCTCAGCTGAGTAGTA 535
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 730 TTGTTGCAATGGCATTGTTGTTACAGAGAGGAAACCCGCGTTTTTCTCAGCTGAGTAGTA 789
Query 536 CAATGTTTGGCCTGTTTTACTGTGGATATCTTCCTTGTTTCTGGATAAAGCTACGGTGTG 595
| |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 790 CGATGTTTGGCCTGTTTTACTGTGGATATCTTCCTTGTTTCTGGGTTAAGCTACGTTGTG 849
Query 596 GTCTTACTGCTCCAGTTCTAAACTCCGG 623
||||||||||||||||||||||| ||||
Sbjct 850 GTCTTACTGCTCCAGTTCTAAACACCGG 877
Score = 771 bits (417), Expect = 0.0
Identities = 443/456 (97%), Gaps = 0/456 (0%)
Strand=Plus/Plus
Query 658 GGAATTGGAAGAAGCTGGCCTACTATCCTCGGTGGCCAAGCACATTGGACAGTTGGACTA 717
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 876 GGAATTGGGAGAAGCTGGCCTACTATCCTCGGCGGCCAAGCACATTGGACAGTTGGACTT 935
Query 718 GTTGCTATATTGATTTCTTTCTGCGGTATAATTGCCTCAGACACGTTTGCTTTTCTTGGT 777
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 936 GTTGCTATATTGATTTCTTTCTGTGGTATAATTGCCTCAGACACGTTTGCTTTTCTTGGT 995
Query 778 GGCAAGGCATTTGGTAAAACTCCTCTTATTAGCATTAGTCCAAAGAAGACATGGGAAGGA 837
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GGCAAGGCATTTGGTAGAACTCCTCTTATTAGCATTAGTCCAAAGAAGACATGGGAAGGA 1055
Query 838 GCTCTTGCAGGACTTGTTGGTTGTATTTCCATTACCATTTTACTCTCCAAATCGTTGTCC 897
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 GCTTTTGCAGGACTTGTTGGTTGTATTTCCATTACCATTTTACTCTCCAAATCGTTGTCC 1115
Query 898 TGGCCTCATTCTCTTGTCAGCACTATAGCTTTTGGAGTTCTTAACTTCTTCGGATCTGTC 957
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1116 TGGCCTCAATCTCTTGTCAGCACCATAGCTTTTGGAGTTCTTAACTTCTTCGGATCGGTC 1175
Query 958 TTTGGTGACTTAACGGAGTCAATGATCAAACGTGATGCGGGTGTCAAAGACTCTGGCTCA 1017
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1176 TTTGGTGACTTAACTGAGTCAATGATCAAACGTGATGCGGGTGTCAAAGACTCCGGCTCA 1235
Query 1018 CTCATCCCTGGACATGGTGGTATATTGGACAGAGTTGATAGTTACATTTTCACTGGTGCA 1077
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1236 CTCATCCCTGGACACGGTGGCATATTGGACAGAGTTGATAGTTACATTTTCACTGGTGCA 1295
Query 1078 TTAGCCTACTCGTTCGTAAGACTTCATGGAGTTTGA 1113
||||||||||||||||||||||||||||||||||||
Sbjct 1296 TTAGCCTACTCGTTCGTAAGACTTCATGGAGTTTGA 1331
Score = 152 bits (82), Expect = 7e-36
Identities = 90/94 (96%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCCATTACCGCTCTCATTGAGCTCTCTC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 132 ATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCCATTACCGCTTTCATTGAGCTCTCTC 191
Query 61 TGTACATGTCCTTGCCGTTCTTCTCCAAGAAAAT 94
|||||||| ||||||||||| |||||||| ||||
Sbjct 192 TGTACATGCCCTTGCCGTTCCTCTCCAAGGAAAT 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5