BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324546
Length=2436
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61150.1 | Symbols: HDG1, HD-GL2-1 | homeodomain GLABROUS 1 ... 3675 0.0
> AT3G61150.1 | Symbols: HDG1, HD-GL2-1 | homeodomain GLABROUS
1 | chr3:22630608-22635123 FORWARD LENGTH=2836
Length=2836
Score = 3675 bits (1990), Expect = 0.0
Identities = 2302/2449 (94%), Gaps = 35/2449 (1%)
Strand=Plus/Plus
Query 1 ATGAATTTCAACGGTTTTCTCGACGACGGTTCCCCCGGAGCCTCAAAGCTACTCTCCGAT 60
||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||
Sbjct 162 ATGAATTTCAACGGTTTTCTCGACGACGG-T--GCTGGAGCCTCAAAGCTACTCTCTGAT 218
Query 61 G-TACCGTACAACAACAACCACTTCTCTTTCTCCGCCGTAGACACCACCATGCTCGGAAC 119
| | |||| |||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 219 GCT-CCGT---ACAACAACCACTTCTCTTTCTCCGCCGTAG--A-CACCATGCTCGGAAG 271
Query 120 CACCGCCATTGCTCCTCCTCATTCTCGTCCTTTCTCTTCTTCAGGCCTCTCCCTCGGACT 179
| |||||||||||||| |||| |||| |||||||||||||||||||||||| ||||||||
Sbjct 272 CGCCGCCATTGCTCCTTCTCAGTCTCTTCCTTTCTCTTCTTCAGGCCTCTCTCTCGGACT 331
Query 180 CCAAACAAATGGAGAAATGAGTAGAAACAGAGAGATTTTCGAGTCGAATGTAACTCGTAA 239
|||||||||||||||||||||||||||| |||||||| | ||||| || |||| ||||||
Sbjct 332 CCAAACAAATGGAGAAATGAGTAGAAACGGAGAGATTATGGAGTCAAACGTAAGTCGTAA 391
Query 240 AAGTAGTAGAGGAGAAGATGTAGAAAGCAGATCTGAAAGTGATAACGCTGAAGCTGTCTC 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 GAGTAGTAGAGGAGAAGATGTAGAAAGCAGATCTGAAAGTGATAACGCTGAAGCTGTCTC 451
Query 300 CGGTGACGATTTAGATACTTCCGATAGACCTTTAAAGAAGAAGAAACGTTACCATCGCCA 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 452 CGGTGACGATTTAGATACCTCCGATAGACCTTTAAAGAAGAAGAAACGTTACCATCGTCA 511
Query 360 CACTCCTAAACAAATTCAAGACCTCGAATCGGTTTTTAAAGAGTGTGCACATCCAGACGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 CACTCCTAAACAAATTCAAGACCTCGAATCGGTTTTTAAAGAGTGTGCACATCCAGACGA 571
Query 420 AAAGCAACGTCTTGATCTCAGCCGTCGACTTAATTTAGATCCTCGTCAAGTCAAATTCTG 479
||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 572 GAAGCAACGTCTTGATCTTAGCCGTCGACTTAACTTAGATCCTCGTCAAGTCAAGTTCTG 631
Query 480 GTTCCAGAATCGCCGTACTCAGATGAAGACTCAAATCGAACGACATGAGAATGCTTTGTT 539
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GTTCCAGAATCGTCGTACTCAGATGAAGACTCAAATCGAACGACATGAGAATGCTTTGTT 691
Query 540 GAGGCAAGAGAACGATAAGCTTCGAGCTGAGAATATGTCTGTACGCGAAGCTATGAGAAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 GAGGCAAGAGAACGATAAGCTTCGAGCTGAGAATATGTCTGTACGCGAAGCTATGAGAAA 751
Query 600 CCCTATGTGTGGTAACTGCGGCGGACCTGCTGTTATCGGCGAGATCTCCATGGAAGAACA 659
||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 752 CCCTATGTGTGGTAATTGCGGCGGACCTGCCGTTATCGGTGAGATCTCAATGGAAGAGCA 811
Query 660 ACATCTTCGAATCGAAAACTCTCGTCTCAAAGATGAGTTAGACCGAGTCTGTGCCTTAAC 719
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 ACATCTGAGAATTGAAAACTCTCGTCTCAAAGATGAGTTAGACCGAGTCTGTGCCTTAAC 871
Query 720 CGGTAAATTTCTTGGCCGGTCCAACGGTTCTCATCATATACCGGACTCAGCACTTGTTCT 779
|||||| |||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 872 CGGTAAGTTTCTTGGCCGGTCTAATGGTTCACATCATATACCGGACTCAGCACTTGTTCT 931
Query 780 CGGCGTTGGTGGTGG--CTG-T--A---A-TGTTGGTGGTGGTTTCACTCTCTCTTCTCC 830
||||||||||| ||| ||| | | | ||||||||||||||||||||||||||||||
Sbjct 932 CGGCGTTGGTGTTGGTTCTGGTGGATGTAATGTTGGTGGTGGTTTCACTCTCTCTTCTCC 991
Query 831 TG-TGTTGCCTCAAGCTTCTCCAAGATTTGAGATTTCTAATGGAACCGGTTCTGGTTTGG 889
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 992 -GCTGTTGCCTCAAGCTTCTCCTAGATTTGAGATTTCTAATGGAACCGGTTCTGGTTTGG 1050
Query 890 TGGCTACGGTTAACCGTCAACCACCGGTTGGTGTTAGTGATTTTGATCAGAGATCGAGGT 949
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1051 TGGCTACGGTTAACCGTCAACAACCGGTTAGTGTTAGTGATTTTGATCAGAGATCGAGGT 1110
Query 950 ATTTGGATTTAGCTCTTGCGGCTATGGATGAGCTTGTGAAGATGGCTCAGACACGTGACC 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1111 ATTTGGATTTAGCTCTTGCGGCTATGGATGAGCTTGTGAAGATGGCTCAGACACGTGAGC 1170
Query 1010 CGCTCTGGGTTAGGAGCTCGGATACTGGTATTGAAGTGCTGAACCAGGAAGAGTACGACA 1069
||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1171 CGCTCTGGGTTCGAAGCTCGGATTCTGGTTTTGAAGTGCTGAACCAGGAAGAGTACGACA 1230
Query 1070 CAAGTTTCACTCGATGTGTTGGACCAAAACCAGATGGGTTTGTCTCAGAAGCTTCTAAAG 1129
|||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1231 CAAGTTTCTCTCGGTGTGTTGGACCAAAACAAGATGGGTTTGTCTCAGAAGCTTCTAAAG 1290
Query 1130 AAGCTGGAACTGTTATCATCAATAGCTTAGCCCTCGTTGAAACCTTGATGGACTCGGAAC 1189
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1291 AAGCTGGAACTGTTATCATCAATAGCTTAGCGCTCGTTGAAACCTTAATGGACTCGGAAC 1350
Query 1190 GATGGGCGGAAATGTTTCCAAGTATGATCTCAAGAACTTCAACCACAGAGATTATCTCTA 1249
| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1351 GGTGGGCGGAAATGTTTCCTAGTATGGTCTCAAGAACTTCAACCACAGAGATTATCTCTA 1410
Query 1250 GTGGCATGGGAGGGTCACGAAATGGTGCACTTCACCTGATGCACGCAGAGCTTCAATTGC 1309
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1411 GTGGCATGGGAGGG-C--GAAATGGTGCACTTCACCTGATGCACGCAGAGCTTCAACTGC 1467
Query 1310 TGTCTCCACTCGTGCCTGTTCGACAAGTGTCGTTCTTGCGGTTCTGTAAACAGCACGCAG 1369
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1468 TGTCTCCACTCGTGCCGGTTAGACAAGTGTCGTTCTTGCGGTTCTGTAAACAGCACGCGG 1527
Query 1370 AAGGTGTTTGGGCGGTGGTCGATGTCTCCATTGATTCCATTAGAGAAGGATCTTCTTCCA 1429
||||||||||||| || || |||||||| |||||||||||||||||||| |||||||| |
Sbjct 1528 AAGGTGTTTGGGCAGTCGTGGATGTCTCAATTGATTCCATTAGAGAAGGTTCTTCTTCGA 1587
Query 1430 GCTGTAGAAGGTTACCGTCCGGTTGCCTCGTACAAGACATGGCCAATGGCTGCTCTAAGG 1489
|||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1588 GCTGTAGAAGATTACCATCCGGTTGCCTCGTACAAGACATGGCCAATGGCTACTCAAAGG 1647
Query 1490 TAACATGGATCGAGCACACGGAGTATGACGAAAACCGCATCCACCGTTTATACCGCCCAT 1549
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1648 TAACATGGATCGAGCACACGGAGTATGACGAAAACCACATCCACCGTTTATACCGCCCAT 1707
Query 1550 TACTCAGCTGTGGACTAGCGTTTGGTGCGCATCGATGGATGGCTGCGTTACAACGTCAAT 1609
||||||| || || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1708 TACTCAGGTGCGGTCTAGCGTTTGGTGCGCATCGATGGATGGCTGCATTACAACGTCAAT 1767
Query 1610 GCGAATGCCTCACCATTCTCATGTCCTCCACTGTTTCCCCTTCCCCTAACCCAACCCCTA 1669
||||||||||||| |||||||||||||||||||||||| ||||| |||| ||| ||||||
Sbjct 1768 GCGAATGCCTCACGATTCTCATGTCCTCCACTGTTTCCACTTCCACTAATCCATCCCCTA 1827
Query 1670 TAAACTGCAATGGGAGAAAAAGCATGCTAAAGCTAGCGAAGAGGATGACTGATAATTTCT 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 TAAACTGCAATGGGAGAAAAAGCATGCTAAAGCTAGCGAAGAGGATGACTGATAATTTCT 1887
Query 1730 GCGG-GGGAGTTTGTGCTTCTTCGTTACAAAAATGGAGCAAACTCAACGTTGGTAACGTC 1788
| || ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1888 GTGGAGGG-GTTTGTGCTTCGTCGTTACAGAAATGGAGCAAACTCAACGTTGGCAACGTC 1946
Query 1789 GACGAGGACGTTCGGATAATGACTAGGAAGAGCGTAAACAATCCCGGCGAACCGCCTGGT 1848
||||| |||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1947 GACGAAGACGTTAGGATAATGACTAGGAAGAGTGTAAACAATCCTGGCGAGCCGCCTGGG 2006
Query 1849 ATCATTCTAAACGCCGCGACGTCAGTTTGGATGCCGATTTCTCC-ACGGAGGTTGTTTGA 1907
|| |||||||| || ||||||||||||||||||||| | ||||| | || ||||||||||
Sbjct 2007 ATAATTCTAAATGCGGCGACGTCAGTTTGGATGCCGGTATCTCCGA-GGCGGTTGTTTGA 2065
Query 1908 CTTCCTTGGAAATGAACGGCTGAGATCGGAATGGGATATCTTATCCAACGGTGGGCCTAT 1967
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 2066 CTTCCTTGGAAACGAACGGCTTAGATCGGAATGGGATATCTTATCCAACGGTGGACCAAT 2125
Query 1968 GAAAGAGATGGCCCATATAGCTAAAGGCCATGACCATTCCAACTCTGTCTCCCTCCTCCG 2027
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 2126 GAAAGAGATGGCCCATATAGCTAAAGGCCATGACCGTTCCAACTCCGTCTCCCTCCTCCG 2185
Query 2028 TGCCAGCGCGATAAATGCGAATCAGAGTAGTATGCTGATATTACAAGAGACAAGCATAGA 2087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2186 TGCCAGCGCGATAAATGCGAATCAGAGTAGTATGCTGATATTACAAGAGACAAGCATAGA 2245
Query 2088 CGCTGCAGGAGCGCTTGTTGTGTACGCGCCTGTGGATATCCCAGCAATGCAAGCTGTGAT 2147
||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2246 CGCTGCAGGAGCGGTTGTCGTGTACGCGCCTGTTGATATCCCAGCAATGCAAGCTGTGAT 2305
Query 2148 GAACGGTGGAGATTCTGCTTACGTGGCACTGCTTCCCTCAGGATTCGCCATTCTCCCTAA 2207
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2306 GAACGGTGGAGATTCTGCTTACGTGGCACTCCTTCCTTCAGGATTCGCCATTCTCCCTAA 2365
Query 2208 CGCTCAGGCGGGTATGCAACGCTGCGCCGCAGAGGAACGTAACGGTAACGGTAACGGTAA 2267
|| |||||| |||| |||||||||||||||||||||||||||| ||| | |||||
Sbjct 2366 CGGTCAGGCTGGTACGCAACGCTGCGCCGCAGAGGAACGTAACAGTAT---T---GGTAA 2419
Query 2268 CGGTGGGTGCATGGAGGAAGGAGGGTCGTTACTAACGGTGGCGTTTCAGATTCTGGTGAA 2327
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2420 CGGTGGGTGCATGGAGGAAGGAGGGTCGTTACTAACGGTGGCGTTTCAGATACTGGTGAA 2479
Query 2328 TAGTTTGCCTACGGCTAAGCTCACGGTGGAATCTGTAGAGACGGTTAATAATCTGATATC 2387
||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||
Sbjct 2480 TAGTTTGCCTACGGCTAAGCTAACGGTGGAATCTGTGGAGACGGTTAATAATTTGATATC 2539
Query 2388 GTGCACCGTTCAGAAGATTAAAGCTGCTCTTCATTGTGATAGCACCTGA 2436
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2540 GTGCACCGTTCAGAAGATTAAAGCTGCTCTTCATTGTGATAGCACCTGA 2588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120983313450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5